Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC046143.2	Gene	0	31.46	23.70	26.46	26.47	43.89	19.38	222.35	85.24	25.31	15.21	35.06	21.15	7.95	13.92	55.26	26.02	59.85	13.26	41.21	5.12	9.50	18.25	13.94	23.16	22.68	19.57	34.24	16.87	24.87
2	453671	Transcript	0	9.08	5.00	10.25	13.16	17.95	3.59	99.61	22.38	6.69	2.76	6.58	5.85	1.81	3.99	16.64	5.32	19.34	3.94	16.75	1.52	2.99	4.74	2.64	2.59	8.16	7.69	10.79	5.64	8.16
3	447982	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	419571	Transcript	0	10.20	0.00	1.35	0.00	14.15	0.00	5.09	0.00	0.00	0.00	0.00	0.00	0.00	2.77	0.00	7.11	1.26	0.00	0.00	0.00	1.68	1.90	0.00	0.00	3.49	0.00	0.00	8.40	0.00
5	ER1a	ExonRegion	0	23.64	7.47	28.55	46.81	19.06	5.16	256.77	40.11	13.27	4.42	5.11	18.71	4.62	7.69	29.08	16.18	47.90	8.36	19.16	4.40	6.85	11.48	8.77	6.05	8.50	13.41	12.80	21.27	29.29
6	E1_Ab	KnownBoundary	0	58.99	17.94	7.03	0.00	0.00	5.56	64.25	54.49	10.05	5.47	0.00	5.72	7.58	13.14	17.54	5.81	19.72	4.62	32.37	11.58	3.53	36.75	2.41	16.75	8.60	8.37	2.14	4.49	1.42
7	ER1b	ExonRegion	0	56.59	13.39	14.41	32.25	21.71	16.91	521.41	105.79	34.33	25.94	31.75	33.58	14.37	17.42	62.85	45.42	75.12	27.97	35.32	8.89	18.24	25.59	19.80	23.57	27.76	38.67	37.65	45.10	60.88
8	E1_Ac	KnownBoundary	1	35.33	17.45	27.58	36.67	7.07	24.52	332.36	59.37	20.86	22.37	45.21	35.00	10.29	20.94	101.45	24.56	88.26	13.87	40.46	11.25	2.05	15.27	39.99	21.95	31.98	21.37	103.87	46.01	50.77
9	ER1c	ExonRegion	0	49.82	19.58	71.52	79.65	77.40	22.60	249.33	99.70	25.77	22.45	37.60	29.74	12.12	25.14	53.64	31.85	78.50	16.92	74.66	3.83	12.89	28.67	20.53	30.53	29.16	26.57	52.82	19.82	26.08
10	E1_Da	NovelBoundary	0	42.00	25.21	21.30	72.90	17.98	16.50	161.12	30.01	20.49	21.01	30.72	27.74	16.11	13.89	95.47	40.85	49.50	9.25	48.55	3.89	11.91	8.51	7.24	18.96	18.11	11.63	41.70	10.42	20.57
11	E1a_E2a	KnownJunction	0	3.01	4.85	3.46	0.00	19.31	1.84	44.91	13.44	3.20	2.04	5.85	1.54	1.34	1.04	17.54	0.00	8.26	0.00	8.09	0.00	1.97	2.43	0.00	0.00	9.40	3.82	8.45	0.00	0.00
12	E1a_E2b	KnownJunction	1	19.17	13.57	11.26	0.00	47.45	6.45	90.80	59.57	5.94	3.24	10.91	4.31	0.00	8.84	8.37	10.79	14.14	4.62	16.18	7.44	1.85	6.76	9.51	5.32	18.03	3.82	10.14	0.00	8.35
13	E1a_E3a	NovelJunction	0	0.00	0.00	3.59	0.00	0.00	1.73	7.15	11.99	0.00	0.00	6.14	0.00	0.00	0.00	17.94	0.00	4.64	0.00	0.00	0.00	1.60	0.00	0.00	2.63	1.59	1.80	0.00	0.00	0.00
14	I1	Intron	0	10.13	13.15	5.70	9.30	6.56	5.51	32.18	8.28	7.90	7.09	10.07	8.73	2.19	6.78	15.11	12.38	35.01	6.73	18.51	0.60	6.08	3.01	2.93	11.91	6.92	4.15	10.06	6.31	7.27
15	I1_AR1	ActiveIntronRegion	0	21.99	24.96	9.13	26.98	6.89	10.60	101.65	14.20	17.67	13.99	20.38	17.00	4.88	11.50	43.52	24.76	41.58	12.48	61.02	1.93	12.48	7.29	7.82	17.21	11.84	9.32	26.37	9.66	18.05
16	I1_SR1	SilentIntronRegion	1	6.25	8.18	4.02	1.77	6.26	2.91	10.24	5.83	4.22	4.15	4.90	5.82	1.31	5.56	7.14	7.73	28.60	4.21	3.56	0.27	3.84	1.59	1.16	11.42	4.44	2.19	4.84	5.63	3.14
17	I1_AR3	ActiveIntronRegion	0	6.73	14.15	6.86	8.55	9.08	7.59	9.79	7.36	6.62	7.31	12.86	7.17	1.46	5.42	4.47	10.48	44.61	6.51	7.64	0.00	4.33	1.70	1.57	10.39	8.17	4.31	5.11	5.69	4.28
18	I1_SR2	SilentIntronRegion	0	5.59	6.32	3.31	3.09	3.11	1.90	5.76	6.95	3.75	3.85	4.58	5.15	1.11	3.57	2.36	7.58	32.66	4.96	4.35	0.00	4.12	1.55	1.72	4.55	4.54	0.70	3.66	2.65	5.55
19	Ix	Intron	0	6.93	9.70	5.41	1.01	9.61	5.21	10.20	2.85	17.17	6.90	7.69	4.50	1.82	6.74	12.65	11.31	36.49	7.98	5.39	0.00	2.81	1.53	0.51	11.79	5.42	3.97	4.63	4.35	2.73
20	Ix_SR1	SilentIntronRegion	0	6.95	9.73	5.42	1.01	9.63	5.23	10.22	2.85	17.21	6.92	7.71	4.52	1.83	6.76	12.69	11.34	36.59	8.00	5.40	0.00	2.81	1.53	0.51	11.82	5.44	3.99	4.64	4.36	2.73
21	E2_Aa	NovelBoundary	0	0.00	0.00	2.52	0.00	14.74	6.48	0.00	1.84	3.05	1.80	4.43	0.00	0.00	2.17	0.00	0.00	12.25	0.00	0.00	0.00	1.76	0.00	0.00	2.93	3.67	0.00	0.00	0.00	0.00
22	E2_Ab	NovelBoundary	0	5.90	4.75	2.79	0.00	0.00	1.76	13.33	0.00	0.00	4.07	2.47	0.00	0.00	0.93	0.00	3.82	9.86	0.00	0.00	0.00	0.00	0.00	0.00	3.05	7.54	3.56	0.00	4.04	1.55
23	ER2a	ExonRegion	1	7.72	5.91	8.98	5.85	28.89	3.85	78.61	31.30	5.39	2.60	9.28	2.47	1.30	5.81	17.92	3.04	18.63	4.91	20.82	1.69	3.14	3.24	1.81	4.30	13.44	9.12	10.26	1.30	1.88
24	ER2b	ExonRegion	0	20.74	17.74	20.79	10.50	59.65	16.85	160.17	88.69	19.21	14.75	33.55	18.05	5.27	12.37	35.95	20.66	42.78	12.55	32.61	4.35	8.85	16.63	16.86	20.08	25.17	14.74	31.61	11.76	13.75
25	E2_Da	NovelBoundary	0	7.49	18.03	14.70	8.20	34.78	22.02	8.58	15.88	39.53	21.57	14.65	25.09	11.46	23.11	98.26	14.53	68.65	10.53	8.09	7.69	17.65	1.99	8.72	32.00	23.00	39.09	8.45	15.64	14.03
26	E2a_E3a	KnownJunction	0	15.51	12.31	9.87	18.12	59.83	15.73	140.29	88.88	12.00	15.02	50.46	22.68	6.75	7.98	67.77	9.64	42.99	4.62	24.28	4.05	1.97	10.65	17.63	10.89	14.21	11.84	42.74	7.37	18.16
27	E2a_E4a	KnownJunction	0	10.20	0.00	1.35	0.00	14.15	0.00	5.09	0.00	0.00	0.00	0.00	0.00	0.00	2.77	0.00	7.11	1.26	0.00	0.00	0.00	1.68	1.90	0.00	0.00	3.49	0.00	0.00	8.40	0.00
28	Ix	Intron	0	3.67	1.38	5.02	0.00	4.19	1.77	9.50	1.58	5.77	3.71	1.02	1.85	1.11	6.02	10.26	9.57	11.52	3.44	2.74	0.00	0.61	0.00	0.77	5.53	3.06	0.67	0.00	3.49	3.72
29	Ix_SR1	SilentIntronRegion	0	3.71	1.39	5.06	0.00	4.22	1.78	9.58	1.59	5.79	3.74	1.03	1.87	1.12	6.07	10.35	9.65	11.61	3.47	2.76	0.00	0.62	0.00	0.78	5.58	3.09	0.68	0.00	3.52	3.75
30	E3_Aa	NovelBoundary	0	10.97	8.73	3.49	0.00	5.60	0.00	5.03	0.00	10.54	0.00	3.80	0.00	0.00	1.97	35.68	7.11	22.46	4.62	8.09	0.00	1.56	4.72	0.00	5.50	0.00	7.34	0.00	4.09	1.82
31	ER3a	ExonRegion	0	20.69	22.65	23.79	11.38	56.59	19.96	191.85	107.65	22.60	14.25	48.04	23.95	7.44	11.44	88.55	17.93	58.23	11.01	45.11	3.58	8.66	17.87	13.53	25.60	19.63	22.32	28.35	10.13	23.04
32	E3_Da	NovelBoundary	0	5.49	14.54	4.26	0.00	14.30	0.00	0.00	0.00	7.86	1.72	4.14	4.58	0.00	2.46	9.77	20.35	24.63	4.62	0.00	0.00	2.05	2.48	0.00	0.00	0.00	0.00	0.00	9.57	6.77
33	E3a_E4a	KnownJunction	1	23.30	32.96	19.11	0.00	27.26	8.90	219.19	115.01	27.96	17.78	64.47	24.37	15.00	4.92	33.09	10.71	42.99	13.87	40.24	0.00	11.71	28.34	23.34	14.06	16.37	15.71	38.47	3.95	17.43
34	Ix	Intron	0	2.33	4.33	2.42	2.59	0.00	1.50	2.19	1.33	5.27	2.61	4.30	1.11	0.00	1.97	5.32	4.88	14.04	3.48	0.00	0.00	1.03	0.65	0.65	3.89	1.55	1.14	1.99	4.13	0.49
35	Ix_AR1	ActiveIntronRegion	0	2.36	4.40	2.45	2.63	0.00	1.52	2.22	1.35	5.34	2.65	4.37	1.13	0.00	2.00	5.40	4.93	14.23	3.53	0.00	0.00	1.05	0.66	0.66	3.93	1.57	1.15	2.02	4.19	0.49
36	E4_Aa	NovelBoundary	0	10.74	9.31	4.11	10.78	7.37	10.28	23.97	0.00	18.91	3.75	12.24	11.90	4.90	4.52	41.86	23.79	58.93	9.25	8.09	0.00	5.78	1.80	1.92	19.74	11.18	3.73	7.60	0.00	5.18
37	ER4a	ExonRegion	0	28.97	38.37	15.78	7.42	40.32	26.24	146.33	86.57	31.37	15.03	44.69	15.94	7.21	13.25	59.81	28.04	61.29	11.14	41.84	5.81	7.64	16.36	11.81	28.56	26.06	14.87	39.55	10.27	16.76
38	ER4b	ExonRegion	0	1.95	1.79	0.00	0.00	4.53	3.50	18.14	4.69	4.90	1.97	6.06	0.67	0.00	1.40	2.04	2.07	2.55	2.48	18.93	0.00	0.00	1.80	0.00	0.00	1.30	4.43	11.66	0.00	1.46