Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BTLA	Gene	0	57.25	122.23	70.43	312.94	244.70	47.66	134.64	38.91	156.28	193.68	114.68	112.60	51.09	16.04	40.64	83.87	148.87	5.37	7.45	11.66	44.98	22.26	10.90	22.88	27.61	12.66	7.13	3.85	9.60
2	334529	Transcript	0	87.88	119.71	151.59	497.00	281.98	73.26	201.31	67.98	144.21	228.26	172.43	128.54	71.68	19.25	38.36	88.45	165.72	4.49	5.51	13.27	52.40	43.87	13.14	28.61	41.35	20.90	9.63	5.70	13.79
3	383680	Transcript	1	35.92	42.08	26.34	88.00	93.14	3.26	55.27	17.37	37.46	73.14	36.22	34.25	9.59	3.17	8.97	6.88	25.26	13.87	0.00	6.62	11.99	3.60	5.02	0.00	7.12	1.72	0.00	4.58	1.35
4	496584	Transcript	0	2.02	3.58	1.63	1.27	5.37	0.49	0.36	0.00	2.55	5.68	0.49	1.53	0.00	0.61	2.80	1.17	3.30	0.39	0.19	0.00	0.87	0.00	0.00	0.50	1.01	0.19	0.00	0.10	0.32
5	474965	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	IG23_SR3	SilentIntergenicRegion	0	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	88.70	89.74	89.82	545.65	367.93	48.33	161.74	53.44	101.68	204.04	122.64	105.92	60.36	13.84	32.56	101.38	117.69	4.17	9.16	7.55	43.68	37.76	10.47	22.29	44.86	21.27	4.58	6.07	13.27
8	E1_Ab	KnownBoundary	0	161.86	84.15	44.20	320.09	212.07	84.45	151.79	100.18	212.80	285.85	135.05	107.02	59.04	17.33	68.57	145.73	212.58	4.62	8.09	14.14	58.04	61.16	19.31	30.80	53.19	15.92	14.21	6.34	12.02
9	ER1b	ExonRegion	0	140.29	160.02	67.61	425.14	287.96	66.66	272.50	88.14	154.12	365.79	196.94	134.35	85.24	30.87	77.31	162.98	240.64	8.97	9.10	9.08	85.80	45.36	19.64	44.51	81.78	19.96	7.12	9.65	14.72
10	E1_Da	NovelBoundary	0	0.00	9.70	0.00	18.33	0.00	0.00	0.00	0.00	26.37	6.71	0.00	6.33	0.00	0.00	0.00	0.00	30.84	0.00	16.18	0.00	3.53	0.00	0.00	0.00	3.83	0.00	0.00	2.07	1.68
11	E1a_E2a	KnownJunction	1	184.45	226.67	94.70	416.07	548.66	78.58	177.71	96.30	129.30	333.59	206.04	186.65	131.23	39.46	91.09	94.09	308.40	14.64	16.18	21.58	76.85	57.95	18.96	57.90	96.95	24.16	15.21	0.00	21.16
12	I1	Intron	0	1.56	1.67	0.49	3.33	0.95	0.58	1.69	0.22	5.03	4.18	0.85	1.00	0.52	0.16	0.83	0.88	5.22	0.10	0.19	0.12	0.87	0.09	0.04	0.32	0.27	0.24	0.12	0.07	0.16
13	I1_SR1	SilentIntronRegion	0	1.56	1.67	0.49	3.33	0.95	0.58	1.69	0.22	5.03	4.18	0.85	1.00	0.52	0.16	0.83	0.88	5.22	0.10	0.19	0.12	0.87	0.09	0.04	0.32	0.27	0.24	0.12	0.07	0.16
14	ER2a	ExonRegion	0	180.32	196.64	201.95	952.85	633.56	84.48	291.93	102.76	172.62	420.30	260.23	219.14	137.15	35.65	61.98	133.78	266.14	11.29	17.70	26.52	72.03	58.98	29.17	44.21	74.28	31.72	16.74	7.89	23.85
15	E2_Da	NovelBoundary	0	6.02	11.92	0.00	0.00	0.00	0.00	11.04	0.00	2.83	13.58	4.11	2.86	1.43	2.81	7.37	0.00	18.44	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	122.51	139.32	161.07	675.55	246.26	116.25	256.27	57.93	161.25	284.85	212.33	155.69	119.70	24.62	8.97	68.93	189.64	4.62	8.09	12.40	70.96	58.05	11.77	36.55	56.30	29.57	0.00	8.27	22.38
17	E2a_E5a	KnownJunction	1	35.92	42.08	26.34	88.00	93.14	3.26	55.27	17.37	37.46	73.14	36.22	34.25	9.59	3.17	8.97	6.88	25.26	13.87	0.00	6.62	11.99	3.60	5.02	0.00	7.12	1.72	0.00	4.58	1.35
18	E2a_E6a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I2	Intron	0	4.45	3.76	2.59	6.81	3.12	2.73	4.46	0.75	10.02	12.45	2.54	2.76	0.68	0.92	1.23	4.28	12.95	0.62	0.95	0.28	2.03	0.68	0.12	1.14	1.44	0.81	0.05	0.24	0.27
20	I2_SR1	SilentIntronRegion	0	4.46	3.76	2.59	6.82	3.12	2.73	4.46	0.75	10.02	12.46	2.54	2.76	0.68	0.92	1.24	4.28	12.96	0.62	0.95	0.28	2.03	0.69	0.12	1.14	1.44	0.81	0.05	0.24	0.27
21	E3_Aa	NovelBoundary	0	8.61	22.98	9.04	19.84	0.00	5.83	4.81	0.00	9.04	21.65	0.00	12.23	6.27	0.84	0.00	12.24	28.23	4.62	0.00	0.00	5.05	3.94	1.87	0.00	0.00	2.02	0.00	4.58	2.01
22	ER3a	ExonRegion	0	124.46	124.32	237.96	630.97	343.59	77.77	286.28	99.90	141.14	300.64	220.00	161.74	101.97	28.64	61.61	98.61	215.00	3.94	2.77	24.50	67.42	61.69	18.69	32.73	42.80	23.98	26.02	4.81	14.15
23	E3_Da	NovelBoundary	0	5.07	0.00	4.01	0.00	0.00	0.00	2.92	0.00	2.34	7.39	0.00	0.00	0.00	2.17	0.00	0.00	8.24	0.00	0.00	0.00	5.66	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E3a_E5a	KnownJunction	0	83.58	124.78	245.04	436.13	256.72	81.61	210.26	111.53	129.79	201.96	216.38	118.04	42.51	16.57	52.42	96.54	164.68	4.62	0.00	11.66	40.51	52.41	17.93	31.22	46.30	22.57	12.03	6.56	10.40
25	I3	Intron	0	3.17	7.38	1.35	3.38	2.63	1.20	1.08	0.62	4.83	11.56	1.04	4.52	0.13	1.13	1.36	3.96	13.16	0.26	0.00	0.00	1.63	0.12	0.00	0.58	0.38	0.95	0.00	0.11	0.00
26	I3_SR1	SilentIntronRegion	0	3.18	7.39	1.35	3.39	2.64	1.21	1.09	0.62	4.84	11.59	1.04	4.53	0.13	1.13	1.36	3.97	13.19	0.26	0.00	0.00	1.64	0.12	0.00	0.58	0.39	0.95	0.00	0.11	0.00
27	E4_Aa	NovelBoundary	0	8.79	0.00	0.00	10.78	0.00	1.96	0.00	0.00	0.00	18.26	0.00	1.66	0.00	3.37	0.00	0.00	4.77	0.00	0.00	0.00	0.00	0.00	0.00	2.75	1.74	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	0	4.04	7.16	3.26	2.54	5.77	0.97	0.71	0.00	5.11	11.36	0.98	3.07	0.00	1.22	0.00	2.34	6.59	0.79	0.38	0.00	1.73	0.00	0.00	0.99	2.02	0.37	0.00	0.19	0.63
29	E4_Ab	KnownBoundary	0	0.00	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	5.31	0.00	0.00	0.00	2.13	0.00	9.94	3.15	4.62	0.00	0.00	1.80	0.00	0.00	2.21	0.00	0.00	0.00	0.00	0.00
30	ER4b	ExonRegion	0	0.13	3.02	0.90	0.15	8.87	1.32	0.16	0.00	1.08	5.08	0.10	1.21	0.03	0.58	4.03	4.40	0.92	1.04	3.17	0.00	1.06	0.00	0.04	0.26	1.40	0.06	0.00	0.00	1.10
31	E4_Da	NovelBoundary	0	2.36	0.00	1.54	0.00	0.00	0.00	4.92	0.00	3.29	9.23	0.00	7.29	0.00	0.00	0.00	11.47	12.56	0.00	0.00	0.00	0.00	1.90	0.00	0.00	0.00	2.19	0.00	0.00	0.00
32	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	27.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35
33	I4	Intron	0	3.90	1.47	0.00	6.53	0.00	0.63	0.92	0.00	4.33	1.97	1.08	1.69	0.00	0.00	0.00	1.13	3.40	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.65	0.00	0.00	0.00	0.00
34	I4_SR1	SilentIntronRegion	0	3.96	1.49	0.00	6.65	0.00	0.64	0.93	0.00	4.41	2.01	1.10	1.72	0.00	0.00	0.00	1.15	3.46	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.66	0.00	0.00	0.00	0.00
35	E5_Aa	NovelBoundary	0	0.00	8.43	2.42	0.00	0.00	0.00	0.00	0.00	1.80	3.67	0.00	0.00	0.00	3.12	0.00	6.43	7.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00
36	ER5a	ExonRegion	0	174.35	195.28	340.92	515.46	446.86	83.97	327.07	130.91	167.62	395.59	269.95	211.38	113.10	30.57	58.03	124.65	274.56	7.49	10.98	19.50	77.45	53.85	35.74	38.17	55.90	23.91	15.00	11.44	11.42
37	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E5a_E6a	KnownJunction	0	210.52	186.63	296.74	686.98	367.10	96.80	401.19	126.16	178.60	433.81	239.25	254.06	154.35	32.33	97.07	134.33	291.38	0.00	0.00	12.24	86.44	63.79	43.93	41.51	60.54	31.50	0.00	10.51	10.23
39	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	4.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	I5	Intron	0	2.35	2.22	0.44	2.94	1.00	1.10	0.45	0.03	1.19	4.01	1.53	0.81	0.10	0.22	0.10	1.02	1.56	0.23	0.30	0.10	0.93	0.00	0.00	0.48	0.35	0.12	0.00	0.00	0.02
41	I5_SR1	SilentIntronRegion	0	2.67	2.02	0.35	3.37	0.80	0.71	0.43	0.04	1.25	4.25	1.79	0.71	0.12	0.21	0.13	0.82	1.47	0.20	0.38	0.13	0.50	0.00	0.00	0.51	0.44	0.15	0.00	0.00	0.00
42	I5_AR2	ActiveIntronRegion	0	1.25	2.90	0.65	1.67	1.14	2.66	0.71	0.00	1.24	3.22	0.56	1.04	0.00	0.18	0.00	1.04	1.57	0.45	0.00	0.00	2.38	0.00	0.00	0.13	0.00	0.00	0.00	0.00	0.16
43	I5_SR2	SilentIntronRegion	0	0.83	3.41	1.10	0.00	3.80	2.37	0.00	0.00	0.00	2.73	0.46	1.83	0.00	0.46	0.00	4.27	2.91	0.00	0.00	0.00	3.16	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00
44	E6_Aa	NovelBoundary	0	2.24	0.00	2.74	0.00	12.67	3.34	0.00	0.00	1.43	10.79	0.00	2.65	0.00	1.00	0.00	6.12	1.40	0.00	0.00	0.00	4.01	0.00	0.00	5.50	0.00	2.06	0.00	0.00	0.00
45	ER6a	ExonRegion	0	153.10	223.99	199.81	524.29	330.55	83.97	301.98	109.37	232.02	395.79	199.69	212.24	103.06	30.85	92.51	154.05	256.56	9.02	7.59	17.44	88.85	60.86	27.57	40.68	55.62	31.23	11.32	7.72	9.58
46	E6_Da	KnownBoundary	0	138.56	193.32	266.24	758.16	644.16	111.80	303.52	63.05	339.18	449.15	147.73	158.40	82.48	28.52	153.08	186.12	203.62	0.00	0.00	30.93	126.47	71.56	17.83	61.37	67.70	37.98	11.33	5.75	10.53
47	ER6b	ExonRegion	0	82.46	163.85	101.70	342.93	317.04	66.88	157.86	47.84	155.27	223.21	121.76	123.01	61.68	18.17	49.51	104.07	147.13	5.04	6.69	16.99	62.60	29.60	10.13	23.97	27.64	19.20	5.95	4.14	6.90
48	E6_Db	KnownBoundary	0	17.22	149.59	37.90	238.99	323.78	58.17	124.27	23.04	110.79	201.45	95.79	91.78	38.28	10.86	16.14	56.53	126.48	14.26	16.18	21.50	48.45	2.09	5.71	27.46	16.71	23.30	4.97	4.18	12.81
49	ER6c	ExonRegion	0	20.13	120.41	24.08	196.72	195.41	42.36	91.99	17.09	187.18	149.79	90.79	101.32	33.85	12.58	36.26	76.77	141.59	5.08	7.53	10.26	39.42	9.43	6.86	20.28	16.48	7.09	5.55	2.79	8.77
50	IG22	Intergenic	0	0.83	1.89	1.20	11.40	1.64	0.73	2.32	0.63	10.05	8.60	3.19	6.27	0.44	0.18	1.06	1.63	3.42	0.09	0.08	0.08	0.67	0.19	0.13	1.10	0.47	0.23	0.12	0.07	0.39
51	IG22_SR4	SilentIntergenicRegion	0	2.91	12.83	6.30	46.76	8.72	5.94	8.60	3.58	59.15	31.28	17.61	22.38	4.15	1.66	8.96	13.81	26.71	0.39	0.68	0.71	4.25	1.48	1.25	8.70	3.92	1.66	0.83	0.56	3.23
52	IG22_AR3	ActiveIntergenicRegion	0	2.76	8.02	1.91	23.67	3.41	8.10	10.76	1.61	88.98	24.04	10.73	12.56	1.80	0.61	11.60	12.56	20.68	0.66	1.33	0.00	3.61	1.21	0.81	11.89	2.87	0.96	2.67	0.46	1.13
53	IG22_SR3	SilentIntergenicRegion	0	5.58	2.65	8.97	67.48	1.28	0.33	12.46	3.30	18.81	18.96	14.55	35.53	0.23	0.00	0.79	0.07	3.79	0.00	0.00	0.00	1.23	0.28	0.00	0.53	0.82	0.33	0.00	0.02	0.40
54	IG22_SR2	SilentIntergenicRegion	0	0.18	0.45	0.09	0.77	0.05	0.02	0.15	0.00	1.70	2.88	0.24	1.59	0.02	0.00	0.02	0.06	0.43	0.01	0.00	0.00	0.18	0.02	0.00	0.07	0.05	0.04	0.00	0.01	0.09
55	IG22_AR1	ActiveIntergenicRegion	0	1.97	2.88	0.76	74.34	2.80	0.16	18.41	2.30	15.90	11.21	10.01	12.92	0.52	0.00	0.00	1.21	2.30	0.00	0.00	0.63	1.47	0.41	0.00	0.25	0.00	0.18	0.00	0.37	0.23
56	IG22_SR1	SilentIntergenicRegion	0	0.39	0.60	0.29	4.53	2.37	0.10	0.87	0.23	3.83	9.64	1.24	3.94	0.00	0.08	0.00	0.43	0.70	0.13	0.00	0.00	0.15	0.02	0.00	0.18	0.01	0.09	0.00	0.00	0.00