Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRAT1	Gene	0	20.06	106.87	26.28	5.79	12.81	138.11	66.16	6.57	135.17	127.17	25.74	5.61	25.31	50.23	87.82	54.16	63.75	13.67	25.46	19.72	42.67	121.98	14.15	64.53	15.83	22.58	19.99	2.17	31.83
2	295756	Transcript	0	2.95	30.12	2.88	3.91	6.72	39.63	10.80	1.84	14.11	27.93	9.32	0.74	1.99	10.14	8.84	23.54	10.49	6.10	6.53	3.76	10.10	8.80	4.25	11.92	1.93	3.01	13.81	0.44	4.95
3	484927	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
4	426646	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	493604	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.95	0.00	1.72	0.00	0.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	478830	Transcript	0	0.31	0.93	0.24	0.00	0.00	0.40	0.00	0.00	1.38	1.36	0.00	0.00	0.00	0.32	0.78	0.35	1.01	0.00	0.00	0.00	0.41	0.85	0.00	0.00	0.20	0.00	1.08	0.00	0.28
7	ER1a	ExonRegion	0	5.90	48.28	5.29	7.81	13.44	59.13	18.47	1.97	22.89	46.83	14.71	0.61	2.78	15.92	12.89	43.23	15.49	12.08	13.02	6.51	10.30	16.27	7.16	17.53	3.33	4.28	26.24	0.87	9.12
8	E1_Ab	KnownBoundary	0	5.54	76.20	2.49	18.55	25.20	103.40	37.65	4.28	29.02	73.62	22.40	1.42	1.62	14.09	24.12	57.07	5.42	0.00	8.09	7.53	20.50	23.68	18.47	36.79	6.74	7.72	38.86	1.98	2.67
9	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1_Ad	KnownBoundary	0	2.24	9.31	4.24	0.00	6.19	8.29	2.75	0.00	11.79	5.63	5.00	1.81	1.34	5.69	8.37	7.11	7.14	0.00	0.00	0.00	6.34	7.00	0.00	7.24	1.67	3.86	5.67	0.00	0.00
11	ER1b	ExonRegion	0	12.86	88.69	10.10	14.63	39.85	120.28	40.31	3.68	48.31	85.90	39.87	1.24	5.85	35.37	33.60	65.80	33.06	10.92	4.53	14.05	24.96	36.05	14.47	43.02	9.29	12.57	75.09	1.63	13.42
12	ER1c	ExonRegion	0	15.00	91.98	10.10	14.63	54.80	127.84	46.36	3.68	58.42	88.07	40.46	1.24	10.39	39.00	28.00	65.80	38.07	10.92	9.05	25.30	25.67	43.27	16.27	47.33	11.43	14.14	76.92	1.63	14.76
13	ER1d	ExonRegion	0	30.86	121.31	17.73	23.38	54.97	167.36	66.17	4.75	108.08	242.18	52.34	3.54	36.27	55.36	70.85	93.67	82.57	24.02	19.95	35.69	46.44	151.77	27.69	67.01	27.19	33.53	64.27	2.10	43.98
14	E1_Ae	KnownBoundary	0	20.64	52.55	17.44	18.12	13.12	49.23	32.10	0.00	70.07	158.14	37.87	4.58	29.97	40.75	50.23	20.65	73.88	0.00	16.18	14.97	16.69	80.70	14.43	37.44	12.16	16.05	24.80	0.00	29.94
15	ER1e	ExonRegion	0	18.21	80.20	14.35	4.00	5.11	102.48	33.65	7.32	62.87	76.67	12.69	2.19	15.80	46.72	46.75	50.31	35.98	15.14	33.31	25.18	24.70	94.78	7.52	47.73	10.65	7.59	7.72	0.52	20.26
16	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1a_E2a	KnownJunction	0	30.85	123.51	15.52	0.00	0.00	182.48	76.32	6.97	100.10	132.46	21.38	2.92	15.35	70.70	109.43	78.95	38.31	41.61	48.55	54.00	42.88	223.59	18.67	71.36	18.26	11.93	12.32	2.29	27.67
18	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER2a	ExonRegion	0	26.90	145.99	26.28	0.00	5.39	239.01	128.94	9.47	133.13	324.11	53.10	4.69	44.49	75.45	110.20	111.56	94.08	28.82	39.02	38.51	60.67	175.71	29.71	95.31	33.48	38.98	42.46	0.91	54.87
20	E2a_E3a	KnownJunction	0	17.11	114.40	20.53	0.00	21.52	247.01	107.51	13.64	105.40	313.89	50.87	10.81	38.63	66.71	43.05	77.11	92.18	4.62	32.15	36.80	46.49	113.47	50.83	109.64	18.90	55.62	80.91	4.13	46.15
21	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
22	E3_Aa	NovelBoundary	0	0.00	3.68	0.00	0.00	0.00	3.07	0.00	0.00	3.26	3.67	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER3a	ExonRegion	0	28.37	140.19	40.86	11.83	12.60	247.36	99.84	11.05	115.69	274.83	56.92	7.86	33.16	91.51	77.09	69.60	109.57	16.05	32.75	24.47	56.59	195.07	41.75	114.52	21.40	53.57	81.83	8.58	44.65
24	E3_Da	KnownBoundary	0	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	3.41	2.04	0.00	0.00	0.00	0.00	0.00	0.00	5.15	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	20.13	0.00	0.00
25	E3a_E4a	KnownJunction	0	41.23	161.03	43.90	20.92	0.00	188.54	94.12	9.46	104.76	221.82	65.74	3.49	27.39	94.94	119.79	71.99	82.32	33.52	56.65	11.66	53.03	213.43	29.89	96.60	17.65	46.39	42.84	14.51	31.33
26	ER3b	ExonRegion	0	0.31	0.93	0.24	0.00	0.00	0.40	0.00	0.00	1.38	1.36	0.00	0.00	0.00	0.32	0.78	0.35	1.01	0.00	0.00	0.00	0.41	0.85	0.00	0.00	0.20	0.00	1.08	0.00	0.28
27	E3_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	0.00	2.05
28	E4_Aa	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	3.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68
29	ER4a	ExonRegion	0	40.03	148.67	52.90	30.43	28.68	207.22	126.44	9.03	118.75	290.59	52.65	5.07	30.51	96.35	115.26	76.86	87.33	21.97	59.42	38.90	62.39	209.90	31.76	118.35	30.92	35.29	36.04	10.44	46.07
30	E4_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	1.76	0.00	0.00	0.00	4.30	0.00	0.00	4.07	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4a_E5a	KnownJunction	0	46.07	117.60	57.48	38.82	64.40	215.66	182.34	11.69	158.87	340.02	51.31	7.86	44.26	90.53	152.88	111.92	71.76	18.49	32.37	47.06	68.43	257.19	25.95	140.81	38.15	34.89	18.79	3.91	48.30
32	ER4b	ExonRegion	0	0.52	4.50	0.39	0.00	0.00	7.12	0.00	0.00	1.40	2.56	0.35	0.00	0.00	3.09	0.11	4.24	4.84	1.14	1.86	0.00	1.89	0.44	0.44	0.00	0.00	0.38	0.00	0.00	0.00
33	E4_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	6.48	0.00	0.00	2.86	1.80	0.00	0.00	0.00	5.92	0.00	0.00	4.75	0.00	8.09	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER4c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.95	0.00	1.72	0.00	0.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E4_Dc	NovelBoundary	0	0.00	4.07	0.00	0.00	0.00	21.26	0.00	0.00	3.11	5.55	1.49	0.00	0.00	4.90	0.00	6.81	6.53	4.62	0.00	0.00	7.98	1.99	2.51	0.00	0.00	0.00	0.00	0.00	0.00
36	I4	Intron	0	0.32	2.22	0.30	0.00	0.00	5.67	0.73	0.06	2.51	5.38	0.58	0.15	0.00	2.43	1.06	2.52	4.07	0.78	2.62	0.50	2.12	0.49	0.11	1.76	0.43	0.62	0.00	0.05	0.34
37	I4_SR1	SilentIntronRegion	0	0.50	1.64	0.23	0.00	0.00	6.30	0.96	0.00	2.07	4.71	0.55	0.06	0.00	2.14	1.36	2.13	4.36	0.92	1.92	0.77	1.37	0.25	0.00	1.19	0.33	0.58	0.00	0.08	0.22
38	I4_AR1	ActiveIntronRegion	0	0.00	4.18	0.60	0.00	0.00	4.84	0.42	0.22	3.67	8.28	0.71	0.44	0.00	3.20	0.34	3.53	4.24	0.48	2.67	0.00	3.67	0.87	0.43	3.31	0.51	0.91	0.00	0.00	0.43
39	I4_SR2	SilentIntronRegion	0	0.00	0.94	0.00	0.00	0.00	3.49	0.00	0.00	2.53	2.18	0.40	0.00	0.00	2.38	0.89	2.51	1.59	0.60	7.55	0.00	3.24	1.21	0.00	1.54	0.97	0.08	0.00	0.00	1.03
40	E5_Aa	NovelBoundary	0	2.42	7.17	1.32	0.00	0.00	5.18	0.00	0.00	6.00	1.76	4.84	0.00	0.00	0.00	8.37	3.82	2.79	0.00	8.09	0.00	5.37	0.00	0.00	0.00	0.00	1.72	0.00	0.00	1.65
41	ER5a	ExonRegion	0	55.06	153.03	69.83	28.10	57.09	292.64	146.38	20.17	171.72	311.71	53.74	6.74	49.39	113.18	101.25	94.26	97.01	21.93	43.07	37.52	73.50	328.00	27.41	134.17	43.57	63.66	24.39	3.75	53.55
42	E5_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	2.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E5a_E6a	KnownJunction	0	55.86	140.19	75.19	0.00	34.04	214.74	78.61	17.92	150.37	259.29	65.55	14.25	46.65	104.29	120.39	74.97	126.01	36.99	40.46	10.83	56.56	269.83	26.00	102.88	39.51	39.61	3.83	8.76	49.12
44	I5	Intron	0	0.43	2.35	0.14	0.00	0.00	4.25	0.10	0.03	1.51	1.56	0.20	0.15	0.00	0.88	0.72	1.17	1.61	0.61	0.85	0.00	1.64	0.27	0.00	1.04	0.07	0.39	0.06	0.00	0.41
45	I5_SR1	SilentIntronRegion	0	0.28	1.73	0.00	0.00	0.00	4.06	0.18	0.08	1.85	1.28	0.21	0.00	0.00	0.40	0.24	0.47	1.36	0.08	0.98	0.00	1.79	0.32	0.00	1.14	0.06	0.55	0.16	0.00	0.00
46	I5_AR1	ActiveIntronRegion	0	0.51	3.39	0.13	0.00	0.00	5.58	0.00	0.00	1.78	2.51	0.28	0.39	0.00	1.45	0.44	1.67	2.53	0.77	1.78	0.00	1.87	0.28	0.00	0.69	0.23	0.63	0.00	0.00	0.85
47	I5_AR2	ActiveIntronRegion	0	0.91	3.85	0.00	0.00	0.00	3.02	0.00	0.00	1.48	1.27	0.00	0.00	0.00	0.80	4.83	0.00	0.00	1.69	1.40	0.00	1.25	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00
48	I5_SR2	SilentIntronRegion	0	0.00	3.47	0.56	0.00	0.00	3.66	0.00	0.00	1.18	0.96	0.13	0.00	0.00	1.00	0.51	1.02	0.99	0.21	0.35	0.00	0.79	0.00	0.00	0.48	0.00	0.00	0.00	0.00	0.00
49	I5_AR3	ActiveIntronRegion	0	0.86	0.57	0.18	0.00	0.00	4.54	0.00	0.00	0.73	1.71	0.13	0.47	0.00	1.26	1.18	2.94	1.93	0.00	0.00	0.00	1.29	0.39	0.00	1.96	0.00	0.00	0.00	0.00	1.30
50	I5_SR3	SilentIntronRegion	0	0.65	3.28	0.00	0.00	0.00	2.70	0.47	0.00	1.31	1.35	0.28	0.00	0.00	0.76	1.28	0.58	1.75	4.51	0.00	0.00	2.87	0.42	0.00	0.79	0.00	0.74	0.00	0.00	0.47
51	E6_Aa	NovelBoundary	0	0.00	8.34	0.00	0.00	0.00	1.96	0.00	0.00	7.80	3.75	0.00	0.00	0.00	2.15	15.75	3.44	3.98	4.62	8.09	0.00	3.53	2.48	0.00	2.87	0.00	0.00	0.00	0.00	0.00
52	ER6a	ExonRegion	0	27.79	162.82	39.57	5.54	14.64	195.57	95.00	9.21	226.69	158.56	33.59	9.49	37.60	70.89	143.75	73.94	95.94	18.53	36.66	26.73	64.25	174.66	18.32	94.36	21.01	31.20	23.88	3.06	47.29
53	E6_Da	KnownBoundary	0	0.00	16.77	1.25	0.00	0.00	17.80	11.56	2.54	14.04	9.47	0.00	1.57	0.00	7.69	7.77	10.63	5.76	4.62	0.00	0.00	7.90	0.00	0.00	16.63	0.00	0.00	0.00	0.00	0.00
54	ER6b	ExonRegion	0	0.00	11.95	0.46	0.00	0.00	20.13	3.13	1.71	5.32	9.02	3.94	0.87	1.20	4.36	4.79	3.85	5.48	0.12	0.03	1.02	9.91	1.32	1.34	6.31	0.53	1.74	1.38	0.00	0.78
55	IG42_SR1	SilentIntergenicRegion	0	0.20	7.45	1.63	1.09	1.49	13.64	1.08	0.28	2.57	9.58	3.66	0.28	0.30	2.90	2.15	5.07	6.34	1.74	3.20	0.72	6.00	2.18	1.93	4.30	0.00	0.72	1.60	0.00	2.99
56	IG42_AR1	ActiveIntergenicRegion	0	1.19	12.54	2.65	0.00	2.46	19.53	2.22	0.46	5.01	14.22	4.03	0.54	1.54	4.51	3.89	3.64	8.90	2.75	5.13	0.35	6.93	7.20	2.52	8.06	0.54	3.97	1.22	0.00	4.39