Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GTF2E1	Gene	0	69.26	105.09	72.62	143.55	162.99	86.04	142.59	62.44	82.01	108.57	171.08	141.86	95.62	77.20	97.57	68.23	85.35	72.96	86.06	78.44	71.02	48.91	79.36	61.11	86.02	111.48	107.54	29.90	96.81
2	484715	Transcript	0	0.19	0.53	0.63	5.21	4.53	0.28	1.74	0.66	0.49	0.77	1.04	0.26	0.08	0.38	3.17	0.45	0.59	1.53	1.61	0.61	1.08	0.24	0.14	0.00	0.77	0.22	0.00	0.07	0.11
3	469772	Transcript	0	8.61	4.85	2.87	59.96	34.04	3.61	12.24	0.00	1.40	3.56	4.59	16.90	3.03	4.74	0.00	0.00	6.80	0.00	0.00	4.13	1.56	0.00	0.00	2.39	1.93	10.77	6.31	0.00	0.00
4	283875	Transcript	0	117.11	94.13	124.13	140.81	159.35	127.43	218.26	103.52	69.37	167.68	233.49	175.60	122.34	99.24	98.29	93.13	115.64	100.67	80.61	95.23	88.25	72.17	122.03	82.47	137.96	150.85	131.55	40.58	114.49
5	492959	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	497393	Transcript	0	1.95	0.12	0.20	0.00	1.42	0.07	1.51	0.00	0.36	0.57	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.23	0.84	0.03	1.96	0.00	0.00	0.03	0.00	1.22
7	ER1a	ExonRegion	0	0.11	0.00	0.16	0.00	6.69	0.00	0.67	1.99	0.89	0.08	0.15	0.00	0.24	0.28	0.00	0.26	0.15	0.82	1.70	0.00	0.00	0.19	0.43	0.00	0.00	0.23	0.00	0.19	0.32
8	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	28.00	0.00	2.86	2.39	0.00	0.00	3.01	0.00	0.00	1.13	0.00	0.00	0.00	10.02	0.00	0.00	0.00	2.48	2.51	0.00	0.00	2.19	0.00	4.22	4.85
10	E1_Ad	KnownBoundary	0	71.08	38.78	39.56	393.64	353.25	43.32	139.15	39.36	18.00	74.74	152.83	127.92	63.75	41.88	42.65	83.15	38.15	144.61	48.55	72.44	43.76	36.80	96.33	23.15	34.78	123.51	101.08	45.34	80.78
11	ER1b	ExonRegion	0	2.32	0.55	6.45	6.09	17.44	1.15	9.07	3.68	0.28	3.85	7.83	3.30	5.52	2.87	0.47	4.01	2.17	15.01	1.13	0.00	0.00	2.40	5.88	0.00	0.36	4.58	1.07	3.80	7.61
12	ER1c	ExonRegion	0	51.92	31.39	40.71	282.76	256.83	34.83	121.50	32.53	15.73	59.76	117.09	117.99	54.85	36.69	34.54	62.28	35.51	94.76	39.73	53.25	31.54	31.95	82.58	14.58	28.82	107.31	72.85	37.31	78.29
13	ER1d	ExonRegion	0	126.67	103.68	131.60	840.04	854.02	114.74	359.12	99.94	70.04	215.62	337.10	359.70	160.63	136.57	118.66	174.70	130.66	217.99	153.17	137.72	119.64	88.67	257.06	39.59	127.75	564.61	237.07	151.90	300.06
14	E1_Da	NovelBoundary	0	0.00	0.00	1.05	0.00	0.00	1.57	0.00	0.00	0.00	3.67	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.67	0.00	0.00	0.00	0.00	0.00	0.00	1.88
15	E1a_E2a	KnownJunction	0	0.00	0.00	1.42	10.78	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.37	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1a_E3a	KnownJunction	0	141.51	144.94	196.73	1085.79	1206.82	152.86	457.78	137.95	123.21	325.36	409.79	454.30	209.50	188.20	140.72	219.86	208.57	269.96	210.18	136.70	195.30	102.87	354.99	50.48	194.69	943.64	318.06	243.35	454.79
18	E1a_E4a	KnownJunction	0	8.61	4.85	2.87	59.96	34.04	3.61	12.24	0.00	1.40	3.56	4.59	16.90	3.03	4.74	0.00	0.00	6.80	0.00	0.00	4.13	1.56	0.00	0.00	2.39	1.93	10.77	6.31	0.00	0.00
19	E2_Aa	NovelBoundary	0	2.95	4.36	0.00	0.00	0.00	1.76	0.00	0.00	3.72	6.11	0.00	0.00	0.00	4.03	0.00	0.00	0.00	4.62	0.00	0.00	5.09	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
20	ER2a	ExonRegion	0	0.45	1.58	0.29	4.85	6.90	0.83	1.63	0.00	0.59	2.22	2.96	0.77	0.00	0.85	1.13	1.10	0.24	3.78	3.13	1.84	3.24	0.52	0.00	0.00	2.32	0.44	0.00	0.03	0.00
21	E2_Ab	KnownBoundary	0	3.01	0.00	0.00	0.00	0.00	3.91	0.00	0.00	0.00	0.00	0.00	1.36	0.00	1.91	0.00	0.00	1.22	0.00	0.00	4.05	2.01	2.48	0.00	0.00	3.26	2.19	0.00	0.00	0.00
22	ER2b	ExonRegion	0	1.66	4.05	0.00	0.14	2.76	3.26	2.51	0.00	0.80	1.01	2.06	0.17	0.67	2.32	2.28	3.34	2.34	3.95	0.00	1.20	2.78	0.37	0.00	0.00	1.92	0.38	4.53	1.66	0.03
23	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	9.25	16.18	3.64	1.52	0.00	0.00	5.74	3.14	0.00	0.00	0.00	0.00
24	E2a_E3a	KnownJunction	0	0.00	4.85	0.00	0.00	0.00	0.00	2.86	0.00	0.00	2.04	4.81	0.00	0.00	1.13	0.00	0.00	2.23	0.00	0.00	3.56	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E3_Aa	NovelBoundary	0	0.00	0.00	2.87	0.00	12.67	0.00	0.00	0.00	0.00	2.04	0.00	1.17	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	3.95	4.89
26	ER3a	ExonRegion	0	80.58	89.36	62.33	187.46	178.61	77.88	130.51	78.54	54.46	118.28	152.53	155.53	91.15	108.70	42.57	82.08	91.17	87.53	61.00	90.21	76.81	59.10	80.95	37.56	87.08	210.38	70.43	47.64	158.35
27	E3_Da	KnownBoundary	0	95.38	189.44	19.56	80.24	83.26	166.86	468.82	103.41	121.78	338.38	422.29	382.70	208.80	158.62	156.27	235.08	170.19	277.79	218.50	95.68	199.03	55.33	204.53	51.80	199.65	518.19	89.90	91.80	380.78
28	ER3b	ExonRegion	0	108.41	112.74	116.61	330.88	371.74	137.11	208.29	73.73	58.08	204.77	301.45	211.06	123.23	132.35	58.55	118.71	118.52	129.56	115.99	128.50	104.20	52.17	152.55	62.19	130.98	236.24	170.94	69.91	190.08
29	E3_Db	KnownBoundary	0	138.79	69.22	111.84	558.21	541.00	119.48	210.21	105.30	67.97	185.47	285.22	153.13	69.29	139.41	68.17	108.25	96.47	192.00	72.83	122.15	105.09	99.08	82.25	78.66	147.60	126.43	124.59	23.09	82.90
30	ER3c	ExonRegion	0	109.63	65.02	114.60	224.02	165.36	139.95	192.11	80.74	45.11	153.44	324.29	146.92	71.27	125.83	30.39	86.72	91.23	79.21	90.13	106.46	117.02	66.15	108.67	64.93	123.06	99.03	137.37	25.46	71.14
31	E3_Dc	KnownBoundary	0	0.00	0.00	1.02	0.00	12.97	0.00	5.44	0.00	2.44	3.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E3c_E4a	KnownJunction	0	95.03	95.88	89.72	99.43	113.62	180.25	220.39	77.93	39.34	147.32	304.74	167.71	92.76	124.48	35.08	97.15	110.61	80.14	72.83	95.85	109.90	60.67	119.58	71.96	136.58	98.83	138.06	31.36	92.64
33	E3c_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	3.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER3d	ExonRegion	0	1.95	0.12	0.20	0.00	1.42	0.07	1.51	0.00	0.36	0.57	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.23	0.84	0.03	1.96	0.00	0.00	0.03	0.00	1.22
35	E3_Dd	NovelBoundary	0	2.65	4.75	0.00	0.00	7.07	1.80	5.03	0.00	0.00	5.39	1.20	1.87	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.63
36	ER4a	ExonRegion	0	137.93	101.30	142.74	190.35	190.16	148.43	263.87	124.26	67.36	178.86	302.71	211.82	120.99	130.72	54.65	96.46	125.53	90.72	87.31	122.33	131.23	88.38	154.65	77.61	159.17	169.94	168.41	44.50	127.91
37	E4a_E5a	KnownJunction	0	139.50	100.73	179.24	198.01	142.07	86.10	207.69	127.15	66.36	138.93	163.84	232.62	95.63	95.98	75.74	94.78	99.67	83.99	97.11	75.34	78.62	93.20	137.75	76.80	121.80	114.45	125.39	24.35	143.74
38	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.72	0.00	0.00	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER5a	ExonRegion	0	137.66	113.00	143.93	186.26	202.17	99.31	230.33	122.36	59.17	178.20	204.42	208.19	129.03	119.63	85.75	109.66	113.51	98.11	60.09	111.30	89.08	97.90	149.42	88.99	140.60	178.29	129.17	40.31	118.91
40	E5b_E6a	KnownJunction	0	155.13	72.13	151.98	164.36	132.19	114.18	242.02	124.81	63.52	176.56	217.80	185.18	128.40	98.66	122.98	78.26	123.17	126.12	48.55	95.85	82.27	79.68	134.94	83.26	150.86	185.95	90.05	49.87	122.81
41	ER5b	ExonRegion	0	159.15	82.12	190.75	179.16	242.85	128.53	276.16	154.65	66.29	248.33	247.24	208.72	164.00	104.31	102.21	133.50	139.99	125.54	98.44	113.13	91.65	102.76	167.72	104.87	183.31	229.46	186.36	56.24	151.33
42	I5	Intron	0	1.99	3.00	0.12	0.91	1.16	2.78	0.51	0.13	0.92	1.00	1.74	1.25	0.19	1.70	0.50	0.80	1.80	2.24	1.69	0.73	2.18	0.13	0.20	0.51	0.63	0.23	0.10	0.12	0.18
43	I5_SR1	SilentIntronRegion	0	2.34	2.44	0.08	1.01	1.14	3.41	0.38	0.26	0.71	0.81	2.34	1.40	0.33	1.68	0.86	0.35	1.10	1.80	0.75	0.13	1.74	0.08	0.00	0.30	0.54	0.29	0.00	0.00	0.00
44	I5_AR1	ActiveIntronRegion	0	2.14	3.28	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.91	0.00	0.00	5.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00
45	I5_AR2	ActiveIntronRegion	0	2.58	5.85	0.00	0.00	3.41	3.03	0.00	0.00	0.00	1.68	2.35	1.68	0.00	1.57	0.00	1.39	3.81	0.93	7.69	0.00	2.46	0.00	0.17	0.71	1.35	0.00	0.00	2.41	0.00
46	I5_AR3	ActiveIntronRegion	0	2.14	5.08	0.00	0.00	0.00	2.00	0.00	0.00	0.00	1.05	2.98	0.00	0.00	1.81	0.00	1.04	0.00	1.24	3.91	0.00	4.28	0.00	1.81	2.15	1.49	0.00	0.00	2.67	0.00
47	I5_AR4	ActiveIntronRegion	0	1.89	8.61	0.00	0.00	0.00	1.56	0.46	0.42	1.06	0.65	1.58	1.00	0.00	1.66	0.32	0.98	2.02	2.96	5.07	0.00	2.34	0.82	0.16	0.03	0.77	0.00	0.42	0.00	0.30
48	I5_SR2	SilentIntronRegion	0	2.32	4.37	0.00	0.00	1.88	2.11	0.26	0.00	0.90	1.85	0.63	1.17	0.41	1.29	0.41	1.67	2.30	2.85	1.64	0.71	1.26	0.23	0.23	0.28	0.51	0.20	0.23	0.21	0.43
49	I5_AR5	ActiveIntronRegion	0	2.50	2.02	0.30	0.00	0.44	3.33	1.09	0.00	1.31	1.17	1.60	1.22	0.00	2.11	0.00	0.45	3.35	2.83	1.43	2.34	3.33	0.00	0.32	0.77	0.64	0.42	0.16	0.00	0.00
50	E6_Aa	NovelBoundary	0	0.00	9.21	0.00	0.00	0.00	3.41	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.86	0.00	3.52	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.07	0.00	0.00
51	ER6a	ExonRegion	0	59.12	126.39	64.08	120.29	148.74	86.76	134.46	56.68	108.33	98.51	164.16	140.79	104.20	69.52	132.88	63.63	88.81	70.87	102.63	76.08	69.19	45.56	65.89	69.78	81.08	89.18	111.72	24.85	91.19
52	IG30_AR1	ActiveIntergenicRegion	0	0.41	10.20	0.32	6.92	5.66	3.45	5.02	1.07	6.80	1.39	1.61	1.42	2.87	1.13	5.69	2.87	0.29	1.49	6.15	2.65	3.58	0.00	0.35	1.25	1.07	0.91	0.71	0.00	0.00