Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CHCHD4	Gene	0	64.95	82.78	86.68	71.51	176.57	92.70	180.39	130.26	73.68	129.54	103.53	136.68	115.72	60.71	68.49	56.44	46.82	57.96	126.55	59.21	124.27	104.94	92.69	80.69	76.98	56.41	101.54	84.40	51.73
2	295767	Transcript	0	3.98	4.03	11.96	3.75	10.38	5.41	13.38	2.04	4.40	14.24	3.59	12.15	7.82	4.59	5.46	5.08	4.47	5.16	14.39	6.68	5.27	8.02	4.77	7.15	1.07	2.90	9.58	5.96	3.86
3	396914	Transcript	0	33.86	26.76	62.31	33.65	79.88	40.55	60.82	83.56	45.44	25.37	20.09	70.09	37.54	22.02	52.02	18.67	23.77	37.24	72.83	20.43	35.02	82.02	33.44	59.34	30.99	60.42	17.69	18.92	32.55
4	420103	Transcript	0	0.86	1.30	0.34	0.72	2.95	0.55	0.61	0.00	0.34	1.31	0.72	1.23	0.27	0.49	0.93	0.75	0.60	1.15	0.00	0.83	0.29	0.36	0.00	0.00	1.15	0.16	3.31	0.16	0.00
5	IG42	Intergenic	0	0.00	0.00	0.00	0.00	10.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	1.34	0.00	2.11	2.32	0.00	0.00	0.00
6	IG42_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	11.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32	1.73	0.00	2.42	2.95	0.00	0.00	0.00
7	IG42_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	12.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	1.94	1.12	0.00	0.00	0.00
8	ER1a	ExonRegion	0	1.65	0.00	1.81	0.00	4.60	2.54	3.26	0.57	0.86	2.67	0.00	1.52	1.40	0.00	2.58	0.00	0.62	1.26	4.18	0.00	1.76	0.69	1.95	0.00	1.65	1.21	0.00	0.50	1.86
9	ER1b	ExonRegion	0	11.27	10.25	50.96	47.03	191.86	14.63	33.42	23.34	8.87	24.21	10.12	34.46	25.04	9.06	16.65	13.51	10.84	17.83	14.45	11.42	17.85	35.99	28.32	15.63	13.80	25.41	18.10	43.20	12.52
10	E1_Ac	KnownBoundary	1	34.98	7.85	74.99	55.65	354.58	28.78	48.35	52.35	8.25	30.60	24.17	62.14	49.36	14.89	23.32	15.61	18.75	28.51	8.09	21.17	44.88	57.81	41.47	11.25	29.55	26.82	45.57	108.15	20.04
11	ER1c	ExonRegion	0	57.08	32.36	147.80	164.53	375.95	53.82	155.15	128.84	45.23	76.73	58.20	139.87	96.04	40.44	42.72	35.86	60.72	56.18	97.02	57.65	89.03	101.39	102.07	48.29	44.58	97.24	57.81	143.17	52.59
12	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
13	E1a_E2a	KnownJunction	0	3.01	0.00	3.09	0.00	0.00	3.68	13.79	9.31	1.83	10.55	1.36	12.56	1.24	3.06	0.00	6.81	3.69	0.00	8.09	0.00	8.14	15.61	0.00	12.08	8.87	4.21	9.79	0.00	3.30
14	E1a_E4a	KnownJunction	0	33.86	26.76	62.31	33.65	79.88	40.55	60.82	83.56	45.44	25.37	20.09	70.09	37.54	22.02	52.02	18.67	23.77	37.24	72.83	20.43	35.02	82.02	33.44	59.34	30.99	60.42	17.69	18.92	32.55
15	I1	Intron	0	4.05	2.23	1.22	0.55	2.07	3.23	0.70	0.99	0.45	3.34	1.15	1.35	0.33	2.97	0.36	2.17	1.84	2.49	0.99	1.64	2.69	0.28	0.84	1.58	1.49	0.67	0.21	1.89	0.44
16	I1_SR1	SilentIntronRegion	0	4.43	2.54	1.39	0.63	2.36	3.67	0.80	1.13	0.52	3.73	1.30	1.52	0.37	3.31	0.40	2.31	2.07	2.75	1.12	1.74	3.03	0.32	0.95	1.79	1.61	0.76	0.24	2.14	0.50
17	E2_Aa	NovelBoundary	0	0.00	8.92	3.01	0.00	7.37	6.64	4.98	4.63	3.01	1.76	6.04	1.60	2.74	2.17	0.00	7.65	1.40	4.62	0.00	0.00	2.05	0.00	2.31	0.00	0.00	3.30	0.00	0.00	0.00
18	ER2a	ExonRegion	0	7.87	6.69	9.42	0.22	14.33	8.02	36.56	8.89	11.31	17.56	7.94	25.62	14.17	7.75	4.81	11.24	7.86	7.93	16.61	12.75	15.65	15.59	6.58	10.54	7.91	2.88	7.99	7.23	8.98
19	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00	0.00	1.46	1.84	0.00	0.00	0.00	0.00	0.00	0.00	6.26	0.00	8.09	4.13	2.05	2.04	0.00	2.93	1.74	0.00	0.00	0.00	0.00
20	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E2a_E4a	KnownJunction	0	5.84	8.05	30.79	0.00	7.37	9.36	28.04	2.14	8.44	31.40	2.72	27.71	14.78	8.69	0.00	9.79	10.08	5.39	32.37	14.64	11.19	15.31	8.47	8.55	1.44	3.86	25.49	8.85	7.76
22	I2	Intron	0	2.75	3.02	1.32	0.71	3.14	2.65	1.49	0.36	1.66	5.42	0.94	1.68	0.80	2.44	0.68	2.08	2.73	2.87	2.53	2.28	1.83	0.09	0.71	1.28	1.34	0.78	1.09	2.01	0.83
23	I2_SR1	SilentIntronRegion	0	2.96	3.79	1.93	1.37	2.41	3.13	2.97	0.70	2.74	7.16	1.14	2.36	1.76	2.45	0.88	4.27	3.38	4.81	1.88	7.37	3.09	0.00	1.04	1.43	1.81	0.41	0.00	3.75	1.24
24	I2_AR1	ActiveIntronRegion	0	8.57	6.57	4.49	0.00	4.98	6.87	8.06	0.00	4.49	12.75	0.00	0.00	1.30	2.72	0.00	0.00	2.17	2.73	9.05	0.00	4.99	0.00	0.00	2.15	4.29	1.57	0.00	1.63	1.34
25	I2_SR2	SilentIntronRegion	0	2.63	2.73	1.08	0.48	3.38	2.45	0.92	0.25	1.26	4.75	0.88	1.45	0.46	2.43	0.62	1.33	2.51	2.19	2.70	0.50	1.36	0.12	0.61	1.21	1.15	0.90	1.48	1.40	0.68
26	E3_Aa	NovelBoundary	0	2.36	0.00	0.00	0.00	5.89	1.76	2.46	0.00	0.00	4.99	0.00	1.87	0.00	4.41	0.00	0.00	3.29	4.62	0.00	0.00	3.61	0.00	1.87	0.00	1.70	0.00	0.00	0.00	0.00
27	ER3a	ExonRegion	0	2.59	3.89	1.01	2.16	8.84	1.66	1.82	0.00	1.02	3.92	2.15	0.79	0.81	1.48	2.78	2.25	1.80	3.46	0.00	2.49	0.86	1.09	0.00	0.00	3.45	0.47	2.34	0.49	0.00
28	E3_Da	NovelBoundary	0	8.32	0.00	0.00	0.00	6.19	3.53	0.00	0.00	0.00	1.76	0.00	3.31	0.00	0.00	0.00	0.00	3.35	0.00	0.00	0.00	0.00	2.48	0.00	2.93	0.00	0.00	0.00	2.29	0.00
29	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.60	0.00	0.00
30	E4_Aa	NovelBoundary	0	0.00	0.00	1.54	0.00	13.85	0.00	0.00	0.00	0.00	1.80	7.40	1.66	0.00	8.42	0.00	3.14	5.00	5.01	0.00	0.00	0.00	6.76	0.00	2.33	1.89	0.00	0.00	0.00	0.00
31	ER4a	ExonRegion	0	109.84	80.43	77.39	37.38	109.95	85.05	163.68	193.15	85.05	127.26	73.27	171.14	122.97	69.92	55.27	53.76	58.13	58.55	99.43	73.19	119.43	160.99	83.25	95.37	82.97	70.39	64.94	92.01	64.52
32	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.66	0.00	2.13	0.00	2.91	2.39	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	3.33
33	E4a_E5a	KnownJunction	0	133.43	120.02	56.83	50.90	101.39	132.37	239.10	296.75	122.45	198.17	94.11	250.12	217.21	91.75	103.45	69.15	92.60	75.00	193.99	110.90	227.63	189.90	131.15	88.77	113.84	100.29	96.66	166.25	85.21
34	I4_AR1	ActiveIntronRegion	0	0.71	0.27	0.50	0.00	1.24	0.70	1.14	0.58	0.00	1.91	0.65	1.43	0.00	0.61	1.67	0.84	1.54	0.84	2.69	1.16	1.31	0.00	0.30	0.91	1.00	0.69	0.15	1.90	0.00
35	I4_SR2	SilentIntronRegion	0	0.89	1.63	1.01	0.60	1.22	1.20	0.41	0.92	0.94	1.65	0.22	1.88	0.54	0.66	1.21	0.83	1.18	1.13	0.53	0.92	1.29	0.22	0.23	1.53	0.60	0.39	0.31	2.31	0.17
36	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	2.04	0.00	1.17	1.62	4.34	0.00	2.98	2.41	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
37	ER5a	ExonRegion	0	112.34	111.30	90.71	28.82	123.85	123.29	359.36	260.60	105.94	270.69	156.86	289.02	216.83	107.25	92.68	103.61	104.00	127.41	217.51	89.50	187.56	178.33	202.77	123.08	122.75	148.16	133.20	258.03	95.22
38	E5_Da	KnownBoundary	0	104.35	98.02	127.71	19.41	154.59	95.88	339.11	218.82	98.27	242.51	178.10	316.17	218.48	122.39	107.03	104.57	109.35	141.02	169.94	77.24	127.51	123.78	209.02	150.50	129.45	171.91	100.54	271.48	105.91
39	ER5b	ExonRegion	0	85.49	120.64	113.95	95.34	223.27	134.05	247.07	172.98	103.84	179.93	151.75	179.44	158.96	84.28	98.59	78.06	60.13	77.01	180.09	79.55	176.28	137.21	125.13	113.05	108.52	69.20	149.57	102.23	68.88
40	ER5c	ExonRegion	0	4.45	4.04	3.28	11.25	19.16	4.34	8.84	3.40	3.89	8.66	8.06	7.23	7.29	5.09	13.79	5.45	2.70	8.82	6.61	5.41	2.85	8.04	3.89	12.91	0.11	3.63	3.24	8.53	1.96
41	IG41_AR2	ActiveIntergenicRegion	0	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	1.31	1.44	0.00	0.82	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	0.24	0.00	0.60	2.15	2.62	0.00	5.80	0.00	0.00