Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	VHL	Gene	0	94.43	449.86	193.07	119.19	119.33	231.51	235.91	94.85	282.92	430.63	194.59	325.02	126.64	183.55	211.47	161.21	297.71	187.14	354.27	140.39	313.49	89.42	137.78	210.51	238.02	182.61	113.81	302.66	106.47
2	256474	Transcript	0	36.36	88.74	212.19	128.84	149.40	71.35	101.32	46.68	72.48	226.66	74.87	171.43	65.76	102.29	103.48	86.38	135.05	85.49	97.11	39.73	99.36	57.31	84.90	38.35	90.82	118.06	47.32	213.93	69.15
3	442695	Transcript	0	0.71	0.36	0.00	0.00	0.00	0.46	0.00	0.00	0.00	0.00	0.40	0.27	0.00	1.21	3.73	0.84	0.22	0.61	0.00	0.00	0.63	0.00	0.40	0.24	0.48	0.17	0.00	0.91	0.15
4	345392	Transcript	0	13.39	8.73	66.20	20.28	6.04	11.13	23.23	23.44	16.54	25.96	8.19	27.23	6.75	22.69	28.10	16.52	25.75	18.49	16.18	39.28	42.64	30.34	13.79	14.59	26.33	21.84	4.57	57.92	1.65
5	450183	Transcript	0	0.43	2.30	1.80	2.19	2.49	0.69	3.02	2.39	1.12	4.19	1.07	5.57	0.78	2.00	0.00	3.80	4.01	3.27	0.91	1.41	0.86	1.26	0.72	2.58	2.57	2.67	2.75	2.12	1.34
6	477538	Transcript	0	35.50	26.96	39.12	19.72	11.98	18.67	30.81	16.99	25.22	43.74	11.09	32.94	14.81	71.59	45.15	42.58	67.50	63.74	60.95	28.81	32.09	20.36	22.28	53.27	38.46	32.75	17.44	15.83	12.96
7	ER1a	ExonRegion	0	0.35	0.45	0.25	0.58	0.00	0.22	0.33	0.15	0.84	0.57	0.29	0.25	0.00	0.22	3.37	0.49	0.12	0.94	2.33	0.38	0.46	0.29	0.00	0.17	0.70	0.38	0.15	0.40	0.00
8	E1_Ab	KnownBoundary	0	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	3.44	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	0	0.07	0.00	0.47	3.25	3.19	0.11	0.71	0.29	1.10	0.75	0.00	0.60	0.25	0.67	0.00	0.56	0.64	1.37	0.00	0.00	0.10	0.59	2.41	0.00	0.35	1.19	0.00	1.34	0.69
10	E1_Ac	KnownBoundary	0	0.00	0.00	5.33	49.82	40.53	1.57	5.84	4.18	1.71	7.43	0.00	8.76	3.57	3.74	0.00	9.49	4.37	13.87	0.00	0.00	1.64	0.00	10.98	0.00	3.52	6.57	0.00	7.82	3.07
11	ER1c	ExonRegion	1	83.10	21.90	242.57	431.32	276.31	34.00	60.51	15.80	26.03	119.14	24.60	124.78	55.68	65.01	109.87	111.73	84.45	135.59	28.97	40.80	50.78	79.20	100.36	47.40	61.63	121.23	21.58	191.53	59.06
12	E1_Ad	KnownBoundary	1	96.68	37.13	608.87	570.72	406.75	42.93	92.57	21.55	49.97	140.05	29.67	204.54	69.68	91.79	126.77	95.78	187.79	115.59	48.55	72.69	54.03	80.66	123.76	75.97	90.13	158.22	31.76	284.37	68.24
13	ER1d	ExonRegion	1	34.76	34.34	247.47	143.68	109.88	27.07	50.44	11.26	22.78	74.03	11.08	89.52	22.13	36.16	47.16	37.64	97.80	47.14	19.03	22.55	33.13	36.51	60.86	14.81	36.38	65.69	23.69	134.18	54.91
14	E1_Da	KnownBoundary	0	24.18	49.25	68.96	49.18	12.67	30.31	41.77	18.46	15.01	44.94	10.15	41.78	22.90	45.18	35.88	53.24	45.83	42.38	24.28	38.21	29.28	24.36	50.97	20.94	39.40	57.59	11.78	83.30	75.44
15	ER1e	ExonRegion	0	98.56	117.31	177.22	73.36	58.71	73.05	117.88	69.46	58.79	259.70	69.79	231.57	82.15	157.81	157.37	148.61	207.05	232.53	126.62	101.20	104.13	121.57	132.88	89.76	137.41	165.06	38.37	260.12	89.21
16	E1_Db	NovelBoundary	0	30.14	4.36	38.69	21.35	6.34	7.17	7.38	11.60	12.46	5.67	0.00	2.83	1.24	13.83	9.97	0.00	17.24	23.89	0.00	30.19	11.43	11.96	2.12	14.18	0.00	0.00	2.24	1.89	1.58
17	E1b_E4a	KnownJunction	1	60.11	198.85	588.22	336.91	411.76	97.88	213.18	102.47	118.49	514.70	185.73	462.34	154.70	263.40	217.66	222.38	359.92	214.22	226.59	68.97	164.65	142.21	202.81	72.44	208.71	221.48	95.32	495.59	184.91
18	E1b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E1b_E6a	KnownJunction	1	13.39	8.73	66.20	20.28	6.04	11.13	23.23	23.44	16.54	25.96	8.19	27.23	6.75	22.69	28.10	16.52	25.75	18.49	16.18	39.28	42.64	30.34	13.79	14.59	26.33	21.84	4.57	57.92	1.65
20	I1	Intron	0	8.86	0.00	0.00	4.94	0.00	0.95	5.56	0.00	0.77	1.99	0.00	0.85	2.69	7.81	7.57	1.71	0.00	10.62	11.01	3.27	2.95	4.97	1.25	1.48	1.97	2.17	1.26	1.12	1.85
21	I1_SR1	SilentIntronRegion	0	8.98	0.00	0.00	5.01	0.00	0.96	5.63	0.00	0.78	2.02	0.00	0.86	2.72	7.90	7.67	1.73	0.00	10.77	11.16	3.31	2.99	5.04	1.26	1.50	2.00	2.20	1.28	1.14	1.88
22	E2_Aa	NovelBoundary	0	546.56	442.87	400.91	261.85	136.47	471.69	244.99	332.54	774.59	628.74	359.75	310.54	317.49	446.26	419.37	370.56	979.96	0.00	0.00	250.08	612.16	356.22	327.81	600.19	495.42	538.53	247.54	512.62	330.04
23	ER2a	ExonRegion	0	43.74	24.84	42.49	18.53	9.38	17.97	23.57	22.73	21.50	39.83	10.32	29.05	7.97	51.23	44.25	30.40	68.12	59.66	49.07	31.99	30.45	21.08	12.41	55.04	34.76	24.64	11.42	15.75	9.78
24	E2_Da	NovelBoundary	0	23.65	17.55	7.85	0.00	6.78	4.80	11.16	12.84	2.92	21.29	6.36	10.09	0.00	19.99	25.31	0.00	45.90	23.12	8.09	4.13	11.75	7.24	1.87	13.82	8.18	3.82	0.00	21.61	2.44
25	E2a_E4a	KnownJunction	0	27.25	29.09	35.75	20.92	14.59	19.38	38.05	11.25	28.93	47.66	11.86	36.84	21.65	91.95	46.04	54.77	66.88	67.81	72.83	25.64	33.73	19.64	32.16	51.50	42.17	40.85	23.46	15.91	16.14
26	E2a_E6a	NovelJunction	0	0.00	0.00	5.95	0.00	6.63	0.00	2.75	0.00	4.96	11.58	3.95	1.14	1.97	7.58	0.00	0.00	4.82	9.25	16.18	0.00	3.73	4.38	2.46	13.94	12.35	0.00	2.53	0.00	1.85
27	I2	Intron	0	13.05	7.08	3.05	2.18	0.00	8.16	7.67	3.92	2.39	11.21	4.89	5.26	1.88	4.27	17.65	4.91	17.95	14.18	21.89	6.59	12.81	1.92	1.65	11.13	6.09	3.59	5.30	3.97	3.66
28	I2_SR1	SilentIntronRegion	0	13.09	7.10	3.06	2.19	0.00	8.19	7.69	3.93	2.40	11.23	4.90	5.27	1.88	4.28	17.71	4.93	18.00	14.22	21.95	6.61	12.85	1.92	1.66	11.16	6.11	3.60	5.31	3.98	3.67
29	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER3a	ExonRegion	0	0.86	4.60	3.59	4.39	4.98	1.37	6.05	4.79	2.25	8.37	2.14	11.13	1.56	3.99	0.00	7.59	8.01	6.55	1.81	2.81	1.71	2.52	1.45	5.16	5.15	5.34	5.49	4.24	2.68
31	I3	Intron	0	5.36	10.66	1.45	2.34	4.78	8.82	3.95	2.00	4.93	8.32	4.14	2.08	2.11	1.72	13.80	4.71	9.09	9.01	10.42	2.70	12.10	0.20	0.59	5.38	5.29	1.71	0.80	4.43	5.24
32	I3_SR1	SilentIntronRegion	0	5.37	10.68	1.46	2.34	4.79	8.84	3.95	2.01	4.95	8.34	4.15	2.09	2.12	1.73	13.83	4.72	9.11	9.03	10.43	2.70	12.12	0.20	0.59	5.39	5.30	1.71	0.80	4.44	5.25
33	E4_Aa	NovelBoundary	0	21.29	17.64	6.15	7.98	5.45	4.76	7.72	5.03	8.95	14.50	4.43	12.92	1.56	12.81	25.71	33.35	66.42	10.02	16.18	10.92	14.52	3.79	0.00	7.96	4.66	14.85	0.00	9.75	10.20
34	ER4a	ExonRegion	0	206.16	386.52	447.59	298.75	256.61	245.59	300.64	273.18	304.53	655.84	280.18	590.51	196.63	427.46	265.05	306.42	499.42	389.52	410.45	163.02	360.63	228.02	238.18	322.51	429.06	357.64	116.21	450.65	166.89
35	E4_Da	NovelBoundary	0	5.72	4.27	0.00	17.69	13.56	8.48	13.04	0.00	1.58	7.51	1.33	0.00	1.50	5.49	9.97	3.75	21.88	4.62	16.18	7.86	25.35	0.00	2.51	9.03	9.81	2.19	0.00	6.78	1.58
36	E4a_E6a	KnownJunction	0	175.66	379.46	275.31	199.95	104.93	243.06	300.49	131.13	335.13	496.04	287.05	483.52	141.07	341.39	189.35	197.98	441.18	279.08	331.57	148.69	379.32	175.12	175.13	285.02	334.83	225.99	148.79	335.10	108.19
37	I4	Intron	0	6.61	9.34	1.49	1.16	1.19	6.92	3.77	2.09	3.78	8.44	3.00	5.61	2.94	3.27	12.84	2.60	10.67	6.73	17.38	3.68	12.74	0.73	0.88	4.54	2.44	4.85	2.08	4.77	1.46
38	I4_SR1	SilentIntronRegion	0	6.64	9.37	1.50	1.17	1.19	6.94	3.78	2.10	3.79	8.47	3.01	5.63	2.95	3.28	12.88	2.60	10.70	6.75	17.44	3.69	12.78	0.73	0.88	4.56	2.45	4.87	2.09	4.78	1.47
39	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER5a	ExonRegion	0	2.14	1.09	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	1.19	0.82	0.00	3.63	11.20	2.53	0.67	1.82	0.00	0.00	1.90	0.00	1.21	0.72	1.43	0.52	0.00	2.72	0.45
41	I5	Intron	0	8.23	8.84	2.14	0.00	0.89	7.04	1.47	2.36	4.30	6.33	3.70	3.83	1.78	2.56	16.66	5.64	10.64	9.63	8.76	2.01	12.52	0.66	0.66	9.04	2.61	4.02	4.35	9.24	2.69
42	I5_SR1	SilentIntronRegion	0	3.10	6.99	1.81	0.00	0.00	9.45	0.73	0.67	1.22	4.18	2.58	2.46	1.41	1.63	6.67	4.49	6.47	4.99	6.93	1.99	10.83	0.00	1.31	8.56	3.10	3.98	3.31	5.31	0.97
43	I5_SR2	SilentIntronRegion	0	5.08	8.17	1.49	0.00	0.00	3.26	0.00	4.07	7.00	5.17	2.93	2.24	2.05	2.09	30.61	9.71	13.53	15.36	8.21	0.00	9.12	0.84	0.00	7.75	2.83	2.08	0.00	9.70	1.22
44	I5_AR2	ActiveIntronRegion	0	17.63	12.15	2.98	0.00	2.68	5.28	3.32	4.18	7.83	10.28	5.82	6.73	2.25	4.24	25.71	5.63	15.83	14.20	11.97	3.02	16.90	1.59	0.00	10.57	1.81	5.07	8.04	15.18	6.05
45	E6_Aa	NovelBoundary	0	25.66	21.14	8.67	0.00	11.79	3.49	4.52	10.50	11.60	19.81	3.99	5.21	3.34	12.32	33.09	0.00	26.09	10.02	16.18	18.52	15.08	3.89	6.45	17.83	9.24	10.77	1.99	15.32	7.73
46	ER6a	ExonRegion	0	209.78	850.14	438.27	224.84	212.64	456.71	508.37	206.42	431.37	953.11	575.10	857.59	254.21	463.88	339.30	346.43	750.64	379.60	638.62	254.86	665.78	200.50	306.30	421.37	604.02	407.77	262.89	658.87	219.22
47	E6_Da	KnownBoundary	0	153.13	991.61	506.54	244.81	278.09	551.96	560.08	80.32	482.55	889.87	584.83	877.03	273.96	396.20	265.89	353.12	743.57	366.80	655.26	268.28	781.35	113.76	196.16	432.59	461.02	206.03	201.72	570.58	206.47
48	ER6b	ExonRegion	0	123.62	777.80	257.62	162.38	179.53	383.36	372.20	133.97	499.81	663.94	286.90	467.80	199.87	249.48	339.75	235.33	428.57	260.65	598.12	223.68	507.78	116.94	200.03	333.12	348.21	257.70	180.66	452.83	162.44
49	E6_Db	KnownBoundary	0	44.12	106.35	107.51	121.22	65.88	44.70	77.75	38.52	121.35	81.89	42.77	35.63	36.65	36.76	72.75	52.02	110.34	9.12	8.09	10.42	59.56	50.42	33.79	44.98	51.18	110.50	29.42	132.77	28.92
50	E6_Dc	KnownBoundary	0	0.00	13.09	5.98	0.00	19.45	5.64	16.42	4.68	8.34	15.78	0.00	3.64	1.24	5.07	0.00	3.14	2.57	4.62	16.18	3.47	8.02	4.47	11.18	5.62	1.59	14.08	0.00	2.29	0.00
51	ER6c	ExonRegion	0	29.23	67.19	58.04	57.84	44.83	65.42	83.10	26.95	87.58	107.89	27.70	36.77	33.42	26.68	80.70	24.39	22.49	46.02	72.21	22.23	100.50	27.53	48.49	37.55	48.34	91.01	35.96	77.50	21.41
52	ER6d	ExonRegion	0	48.63	66.91	48.09	49.02	36.46	115.96	90.46	37.41	98.12	164.72	38.60	51.70	42.57	43.24	89.41	36.26	45.10	41.31	62.41	49.84	132.95	29.44	51.89	42.45	63.07	132.32	46.48	145.81	22.54