Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CD302	Gene	0	53.66	86.05	13.18	97.82	130.93	214.70	45.24	18.72	78.51	85.19	94.02	66.63	46.40	40.53	98.91	50.08	49.79	52.54	46.62	63.99	162.36	28.00	57.54	371.61	54.53	23.05	89.12	17.36	43.89
2	429078	Transcript	0	1.26	6.41	0.24	6.02	7.23	9.65	4.40	0.78	12.32	4.43	2.58	3.08	2.92	1.97	9.23	5.71	5.41	5.17	4.58	3.74	14.44	1.70	3.62	22.23	1.37	0.43	5.41	0.74	4.17
3	259053	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	480212	Transcript	0	5.19	8.67	0.87	3.48	5.08	6.24	4.05	4.79	6.23	9.25	2.70	3.70	2.01	2.89	9.81	7.25	3.38	6.54	6.00	4.65	8.63	3.72	0.95	4.09	8.65	9.47	2.55	7.53	2.18
5	ER1a	ExonRegion	0	0.15	0.00	0.00	11.49	3.56	0.00	0.00	0.00	0.00	1.75	0.51	0.00	0.00	0.00	0.00	3.43	0.00	3.51	0.00	0.00	0.61	0.77	1.94	0.00	0.61	0.67	0.00	0.00	1.53
6	ER1b	ExonRegion	0	48.93	12.72	10.55	138.14	71.55	39.50	18.22	12.05	6.88	32.42	16.80	23.10	22.39	11.87	28.61	41.50	13.80	24.31	7.82	26.91	53.84	24.98	39.91	34.75	20.35	10.30	31.24	4.64	25.32
7	E1_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	2.14	0.00	0.00	1.78	1.63	2.53	0.00	0.00
8	E1a_E2a	KnownJunction	0	20.94	4.07	14.53	42.71	34.34	26.01	2.92	11.99	4.66	15.14	1.61	11.42	11.85	6.18	0.00	7.34	7.00	13.87	0.00	7.94	13.20	2.48	5.02	20.94	5.38	4.29	6.51	4.49	6.17
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	12.93	0.00	2.34	0.00	1.52	1.61	1.20	1.46	0.95	0.00	0.00	1.13	9.25	0.00	0.00	0.00	0.00	0.00	2.69	3.83	0.00	0.00	0.00	1.39
10	ER2a	ExonRegion	0	32.38	2.25	4.14	6.59	4.94	16.92	2.34	7.75	3.58	9.21	3.36	6.93	10.18	7.13	5.80	11.40	4.49	10.89	4.04	16.41	25.46	15.74	4.01	23.06	8.04	2.35	1.98	0.65	7.97
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix	Intron	0	1.05	0.89	0.70	0.99	0.34	1.91	0.70	0.13	4.72	1.70	1.32	0.30	0.90	0.35	4.98	1.55	7.35	0.94	0.00	1.28	2.18	0.13	0.13	3.13	0.50	0.44	0.51	0.23	0.51
14	Ix_SR1	SilentIntronRegion	0	1.05	0.90	0.70	1.00	0.34	1.91	0.71	0.13	4.72	1.71	1.33	0.30	0.90	0.35	4.99	1.55	7.36	0.94	0.00	1.29	2.18	0.13	0.13	3.14	0.50	0.44	0.51	0.23	0.51
15	E3_Aa	NovelBoundary	1	362.11	292.21	157.09	278.03	190.40	286.38	184.80	264.36	457.06	386.55	126.66	197.74	197.02	190.79	591.78	313.72	307.14	110.32	80.03	162.34	363.92	139.39	194.88	313.73	276.68	530.38	195.06	390.63	136.08
16	ER3a	ExonRegion	0	15.57	26.01	2.61	10.45	15.25	16.78	12.16	14.37	18.70	24.23	8.11	9.24	6.03	8.67	29.43	18.08	10.13	14.98	18.01	13.94	25.88	11.15	2.84	12.27	23.07	28.42	7.64	20.56	6.55
17	E3_Da	NovelBoundary	0	2.89	13.19	1.47	0.00	0.00	1.53	2.80	0.00	8.40	13.14	1.55	6.08	0.00	3.46	0.00	0.00	10.89	0.00	0.00	4.05	0.00	0.00	0.00	7.72	3.60	4.29	2.53	1.84	0.00
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	3.52	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.88	0.00	0.00	2.02	0.00
19	Ix	Intron	0	0.00	2.34	0.00	0.00	2.86	1.34	1.97	0.72	4.93	0.85	0.23	0.24	0.89	0.44	5.75	0.97	7.58	0.00	1.87	0.93	1.67	0.00	0.00	1.68	1.12	1.23	0.36	0.00	0.78
20	Ix_SR1	SilentIntronRegion	0	0.00	2.35	0.00	0.00	2.87	1.35	1.98	0.72	4.95	0.85	0.23	0.24	0.89	0.44	5.77	0.97	7.61	0.00	1.88	0.93	1.68	0.00	0.00	1.69	1.12	1.23	0.36	0.00	0.78
21	ER4a	ExonRegion	0	19.33	11.12	2.85	3.19	4.64	40.21	16.57	8.37	7.01	31.43	18.72	19.10	17.75	7.01	17.62	24.96	11.99	11.64	8.55	10.83	39.98	9.80	32.32	22.60	14.57	10.18	29.13	4.22	17.88
22	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.84	2.92	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	2.66	0.00	0.00	0.00	14.32	2.48	0.00	2.51	0.00	0.00	0.00	0.00	0.00
24	Ix	Intron	0	1.09	6.51	0.00	0.00	1.42	3.49	1.02	0.80	5.21	1.05	1.64	0.67	1.03	0.46	7.56	0.72	13.10	0.56	0.46	0.00	2.28	0.52	0.79	3.43	1.14	0.23	0.00	0.24	0.53
25	Ix_SR1	SilentIntronRegion	0	1.10	6.56	0.00	0.00	1.43	3.52	1.03	0.81	5.23	1.05	1.65	0.68	1.04	0.46	7.61	0.73	13.20	0.56	0.47	0.00	2.29	0.53	0.79	3.46	1.14	0.23	0.00	0.24	0.54
26	ER5a	ExonRegion	0	0.14	0.00	11.37	119.61	77.01	1.69	0.07	0.16	0.00	1.80	1.96	1.46	0.00	0.62	1.29	2.02	1.87	0.56	0.00	0.00	0.79	0.74	1.95	1.55	1.08	0.87	2.80	0.38	0.83
27	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	Ix	Intron	0	1.52	5.46	0.39	0.85	1.54	3.29	2.06	0.14	4.93	2.33	1.17	1.87	1.85	1.08	10.15	0.58	12.73	2.07	0.63	0.87	4.37	0.21	0.71	4.90	1.91	0.56	0.50	0.58	0.50
29	Ix_SR1	SilentIntronRegion	0	1.52	5.47	0.39	0.85	1.54	3.30	2.06	0.14	4.94	2.33	1.17	1.87	1.86	1.09	10.17	0.59	12.75	2.07	0.63	0.87	4.38	0.21	0.71	4.91	1.91	0.56	0.50	0.58	0.50
30	E6a_E7a	KnownJunction	0	0.00	4.75	2.82	38.61	21.66	11.82	2.75	0.00	3.72	21.81	64.50	9.64	12.74	5.43	16.34	2.91	12.92	0.00	8.09	0.00	15.24	0.00	8.13	32.96	8.56	2.19	63.31	4.40	9.47
31	ER6a	ExonRegion	0	0.00	0.00	7.90	41.98	59.04	4.12	3.06	0.00	0.29	10.00	29.31	10.22	7.12	0.91	7.05	0.66	10.13	0.00	3.86	0.00	6.50	3.54	4.15	1.27	3.23	1.34	38.12	2.17	5.12
32	Ix	Intron	0	1.45	3.53	0.63	2.28	0.82	3.35	1.02	0.31	5.18	4.03	1.83	2.29	1.30	1.47	5.32	4.43	7.91	2.00	1.20	1.16	4.35	0.54	0.71	6.04	1.23	0.91	1.17	1.22	0.90
33	Ix_SR1	SilentIntronRegion	0	1.62	3.65	0.76	3.06	0.78	3.63	0.91	0.34	5.45	4.37	2.38	2.06	1.60	1.32	6.52	4.10	9.13	2.48	1.02	1.21	3.90	0.72	0.87	5.95	1.37	1.12	1.03	1.35	1.04
34	Ix_AR1	ActiveIntronRegion	0	1.04	3.26	0.32	0.45	0.92	2.68	1.27	0.23	4.57	3.23	0.53	2.83	0.57	1.85	2.49	5.22	5.05	0.85	1.61	1.04	5.45	0.11	0.34	6.28	0.90	0.42	1.50	0.92	0.57
35	ER7a	ExonRegion	0	64.06	106.49	15.36	111.75	157.45	267.38	55.16	22.23	96.18	104.14	117.20	82.00	56.54	49.96	121.13	59.38	60.88	63.90	57.09	78.36	199.63	33.34	69.70	465.32	66.87	27.57	109.41	20.94	53.02
36	E7_Da	KnownBoundary	0	5.60	42.66	0.95	17.26	20.48	42.01	10.53	6.67	80.21	21.05	10.00	22.83	11.97	19.45	50.23	37.64	18.68	18.49	0.00	3.23	45.00	6.03	15.46	106.17	6.97	1.97	11.28	4.58	10.20
37	ER7b	ExonRegion	0	3.63	19.24	0.73	6.56	18.14	27.12	10.28	2.35	36.95	11.54	7.23	9.25	7.36	5.90	27.68	13.71	13.58	11.99	13.74	11.22	28.38	1.84	8.92	64.17	3.51	0.61	16.22	2.22	10.98