Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	POLR2D	Gene	0	150.60	113.55	173.98	308.18	381.98	243.44	195.68	262.08	77.04	156.82	176.88	109.07	169.58	101.62	124.65	136.39	81.22	174.65	128.82	175.99	270.20	189.43	245.58	121.24	128.49	144.74	192.24	143.15	75.79
2	272645	Transcript	0	0.43	0.65	0.34	0.00	1.81	0.37	0.27	0.74	0.21	0.19	0.48	0.51	0.52	0.16	0.74	0.33	0.40	0.00	0.00	0.38	0.19	0.29	1.10	0.86	0.19	0.10	0.00	0.55	0.18
3	411634	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	487079	Transcript	0	2.54	0.00	17.64	10.78	6.19	1.96	0.00	11.60	6.03	0.00	0.00	2.95	4.14	2.19	0.00	3.21	6.96	0.00	8.09	0.00	2.05	2.48	2.51	2.81	0.00	10.86	1.84	6.87	12.21
5	409955	Transcript	0	20.29	17.94	9.17	0.00	44.51	11.16	28.84	39.71	10.78	17.38	33.31	19.28	26.18	9.79	0.00	14.84	17.98	4.62	24.28	19.19	18.09	33.59	54.62	19.74	12.20	9.14	17.34	37.74	10.07
6	409698	Transcript	0	12.61	2.83	4.36	0.00	5.44	3.56	1.68	3.49	1.09	3.30	1.06	0.60	0.81	1.00	6.82	1.97	1.54	3.17	2.29	7.02	6.91	8.45	1.25	2.09	1.19	6.77	1.02	3.39	3.23
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1b	ExonRegion	0	7.50	7.66	9.41	69.67	62.13	21.84	34.21	14.68	5.87	7.62	5.62	18.45	22.16	5.29	9.49	42.81	8.79	65.80	24.26	6.32	21.16	13.62	40.28	2.09	3.37	27.46	5.29	39.80	15.70
9	E1_Ac	KnownBoundary	0	2.95	0.00	0.00	0.00	12.23	7.10	2.40	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	10.33	0.00	0.00	0.00	3.47	0.00	2.38	9.36	0.00	0.00	1.85	0.00	3.73	2.01
10	E1_Ad	KnownBoundary	0	7.43	28.31	35.63	224.75	119.67	40.55	69.00	28.12	12.70	10.59	9.11	33.88	46.97	9.31	24.72	66.17	17.78	22.73	23.83	13.65	37.86	25.18	82.59	2.45	4.77	66.90	18.93	98.53	35.16
11	ER1c	ExonRegion	0	53.59	47.63	47.69	292.51	264.02	184.21	210.65	74.56	31.46	54.86	26.18	98.95	110.42	30.84	33.60	217.64	51.09	287.93	92.78	47.78	220.38	62.19	238.69	13.98	14.29	159.52	24.73	215.17	67.11
12	ER1d	ExonRegion	0	183.11	123.61	340.27	860.84	759.71	371.01	247.21	531.33	103.72	142.27	105.95	161.81	252.11	104.41	102.20	268.80	131.53	295.76	153.32	170.38	471.97	278.57	356.92	57.04	109.93	403.43	161.52	333.90	136.06
13	E1_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	0.00	0.00	0.00	1.94	0.00	2.04	0.00	0.00	0.00	1.13	0.00	0.00	3.06	0.00	8.09	0.00	0.00	2.04	2.51	0.00	0.00	0.00	2.04	0.00	1.58
14	E1a_E3a	KnownJunction	0	39.40	46.25	302.89	197.14	317.29	69.14	67.91	115.85	46.68	48.25	32.05	53.49	113.43	46.20	25.11	9.79	75.54	61.26	16.18	51.19	32.73	44.34	68.41	50.30	33.26	36.69	58.59	42.46	67.28
15	E1a_E4a	NovelJunction	0	5.90	0.00	42.60	10.78	0.00	1.96	5.55	9.85	1.46	4.07	9.24	5.48	13.72	4.21	0.00	0.00	6.24	0.00	0.00	0.00	5.25	4.57	10.39	2.87	5.53	27.85	0.00	11.46	8.29
16	E1a_E5a	KnownJunction	0	2.54	0.00	17.64	10.78	6.19	1.96	0.00	11.60	6.03	0.00	0.00	2.95	4.14	2.19	0.00	3.21	6.96	0.00	8.09	0.00	2.05	2.48	2.51	2.81	0.00	10.86	1.84	6.87	12.21
17	I1_SR1	SilentIntronRegion	0	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.58	0.00	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2_Aa	NovelBoundary	0	10.38	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	1.13	7.77	0.00	3.40	0.00	0.00	7.36	3.49	4.57	0.00	0.00	0.00	2.02	0.00	0.00	0.00
19	ER2a	ExonRegion	0	11.66	2.18	4.65	0.00	3.52	5.19	3.35	4.73	2.18	4.88	0.54	1.20	1.62	2.01	6.06	3.93	2.14	6.35	4.58	10.23	12.18	3.68	2.51	4.19	2.38	9.43	2.03	6.78	3.65
20	E2_Da	NovelBoundary	0	8.38	0.00	1.20	0.00	7.07	1.96	0.00	2.49	2.98	3.75	2.97	0.00	0.00	1.17	8.37	0.00	2.70	0.00	0.00	3.80	7.66	0.00	0.00	2.99	2.88	0.00	0.00	2.25	0.00
21	E2a_E3a	KnownJunction	0	13.57	3.49	4.06	0.00	7.37	1.92	0.00	2.24	0.00	1.72	1.58	0.00	0.00	0.00	7.57	0.00	0.95	0.00	0.00	3.80	1.64	13.22	0.00	0.00	0.00	4.12	0.00	0.00	2.81
22	E2a_E4a	NovelJunction	0	0.00	4.36	6.25	9.71	6.93	1.96	0.00	2.34	0.00	0.00	0.00	1.51	9.81	0.00	9.97	2.75	2.03	0.00	0.00	8.27	5.29	1.94	2.51	3.05	0.00	0.00	0.00	0.00	0.00
23	E2a_E5a	NovelJunction	0	6.02	0.00	4.06	10.78	12.82	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	4.62	0.00	12.16	0.00	1.94	0.00	0.00	3.83	0.00	2.53	0.00	0.00
24	I2	Intron	0	2.07	3.34	0.81	0.43	2.65	5.77	0.85	0.28	2.77	2.13	2.55	1.25	1.54	1.47	3.49	1.72	2.84	3.78	3.86	0.64	6.50	0.44	0.22	2.01	0.91	0.90	0.28	2.46	1.49
25	I2_SR1	SilentIntronRegion	0	1.72	1.88	0.21	0.89	3.02	5.01	1.12	0.11	2.39	1.43	1.69	0.99	2.00	1.31	4.13	1.23	2.31	3.69	2.37	0.17	4.76	0.56	0.00	1.33	0.97	0.39	0.23	3.22	1.73
26	I2_AR1	ActiveIntronRegion	0	1.86	6.37	0.91	0.00	3.70	7.27	0.22	0.00	3.73	2.80	2.85	1.73	1.39	1.57	2.73	1.86	2.61	3.13	4.84	1.71	7.26	0.39	0.56	1.78	0.77	0.68	0.20	1.53	1.95
27	I2_SR2	SilentIntronRegion	0	3.07	2.77	1.96	0.00	0.64	5.57	1.05	0.96	2.45	2.84	4.02	1.20	0.77	1.70	3.06	2.60	4.25	4.76	5.82	0.36	9.28	0.23	0.27	3.74	0.93	2.25	0.48	1.98	0.43
28	E3_Aa	NovelBoundary	0	16.93	0.00	0.95	0.00	7.37	6.41	2.86	4.78	6.09	2.04	7.59	0.00	0.00	2.04	0.00	3.06	3.38	4.62	8.09	0.00	14.28	2.24	0.00	6.10	1.59	0.00	0.00	1.75	8.25
29	ER3a	ExonRegion	0	224.82	155.82	92.97	149.57	233.00	407.40	308.31	532.73	122.43	242.02	219.44	149.62	270.47	146.59	149.17	261.91	126.64	293.27	172.11	247.08	450.33	346.24	330.08	144.35	207.78	372.95	157.84	307.07	152.48
30	E3_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	5.52	0.00	0.00	0.00	0.00	2.66	1.87	0.00	1.13	0.00	0.00	4.05	9.50	0.00	0.00	5.17	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00
31	E3a_E4a	KnownJunction	0	190.88	112.17	117.75	169.53	204.40	259.56	364.34	305.71	74.12	252.98	334.25	145.99	320.42	153.97	157.46	126.99	135.57	172.22	104.98	204.18	271.91	255.53	416.50	174.54	195.60	276.71	363.39	296.73	159.19
32	E3a_E5a	KnownJunction	0	20.29	17.94	9.17	0.00	44.51	11.16	28.84	39.71	10.78	17.38	33.31	19.28	26.18	9.79	0.00	14.84	17.98	4.62	24.28	19.19	18.09	33.59	54.62	19.74	12.20	9.14	17.34	37.74	10.07
33	E4_Aa	NovelBoundary	0	5.19	0.00	9.89	9.27	45.10	10.86	0.00	11.69	8.89	9.75	1.20	1.30	3.28	8.53	0.00	7.34	11.41	0.00	16.18	3.47	3.93	9.67	2.12	11.48	3.45	1.72	13.82	6.43	4.29
34	ER4a	ExonRegion	0	294.42	162.16	356.54	348.19	498.41	277.33	259.07	487.81	72.77	205.63	220.39	134.37	253.42	175.56	114.23	124.40	107.13	216.06	142.75	257.50	271.86	438.50	351.18	187.84	199.97	182.16	275.49	203.06	102.23
35	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	0.00	1.42	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00
36	E4a_E5a	KnownJunction	0	263.08	253.53	509.41	611.49	623.23	303.37	205.06	508.41	112.22	208.44	238.84	147.65	248.32	184.70	203.11	226.90	87.65	280.88	242.55	319.71	275.12	380.43	339.58	210.79	199.39	148.74	235.17	184.94	65.43
37	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.65	2.75	0.00	1.52	1.84	0.00	0.00	0.00	1.15	8.37	0.00	0.00	0.00	0.00	3.56	7.42	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
38	ER5a	ExonRegion	0	426.41	249.98	349.58	719.30	784.20	408.77	405.78	682.52	128.82	330.46	346.61	232.12	392.26	249.98	214.86	246.61	158.16	374.87	244.66	406.11	440.15	566.34	484.17	285.94	305.53	265.03	284.58	260.99	153.62
39	E5_Da	KnownBoundary	0	553.52	243.35	278.72	786.20	947.60	409.15	461.09	883.99	166.00	314.97	381.67	262.80	468.59	254.56	297.58	147.11	204.11	410.08	274.69	384.55	439.13	594.30	563.76	315.23	317.25	340.91	440.12	414.99	218.98
40	ER5b	ExonRegion	0	319.25	207.26	316.46	528.01	638.55	395.77	336.49	554.34	104.79	286.11	355.33	222.65	317.53	215.23	209.67	235.65	182.24	332.22	250.54	353.40	434.22	383.15	480.94	212.82	243.84	238.41	353.87	246.00	110.06
41	E5_Db	KnownBoundary	0	276.05	211.16	375.22	588.62	575.78	491.18	464.01	475.46	146.72	368.98	480.62	245.00	363.57	183.17	256.52	300.56	200.58	368.85	364.16	341.30	610.60	269.83	540.81	211.51	201.93	286.97	374.22	288.01	111.98
42	ER5c	ExonRegion	0	238.38	223.09	327.27	580.19	762.16	505.23	373.17	360.97	165.87	304.71	353.67	187.71	291.43	179.54	270.88	253.01	133.34	308.56	258.01	331.77	555.67	272.62	454.54	251.25	233.65	212.60	419.23	218.02	131.67
43	E5_Dc	KnownBoundary	0	107.83	116.83	173.11	228.20	467.02	176.99	234.07	223.10	56.22	165.93	223.94	143.04	182.31	106.09	179.99	89.20	77.00	146.41	113.29	173.75	224.18	133.70	190.89	120.05	106.04	114.07	218.17	112.15	92.07
44	ER5d	ExonRegion	0	28.57	22.52	63.98	116.15	149.00	38.05	49.59	50.59	20.93	37.73	54.40	39.37	46.95	18.22	39.45	26.19	24.73	36.14	28.26	32.45	48.35	29.62	65.33	25.59	30.13	33.73	67.70	47.27	23.61
45	E5_Dd	KnownBoundary	0	4.66	0.00	9.59	36.67	17.83	7.14	23.69	19.01	10.54	5.83	11.07	4.52	4.97	5.23	0.00	15.22	1.40	0.00	0.00	3.31	9.15	8.90	4.38	8.37	7.05	3.60	20.03	9.97	4.62
46	ER5e	ExonRegion	0	0.86	1.30	0.68	0.00	1.97	0.74	0.54	1.47	0.43	0.39	0.96	1.02	1.04	0.31	1.47	0.66	0.80	0.00	0.00	0.75	0.38	0.58	2.19	1.73	0.38	0.21	0.00	1.10	0.36