Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PDCD1	Gene	0	24.93	59.52	467.57	146.50	14.84	88.39	54.76	229.46	167.95	155.77	44.53	76.12	335.59	75.06	55.04	204.80	268.22	45.08	11.71	14.84	38.71	241.86	32.46	63.78	32.48	57.75	12.55	8.26	45.71
2	334409	Transcript	0	26.37	59.16	327.23	157.87	12.44	80.86	40.83	182.14	124.96	140.50	40.04	60.04	276.29	63.26	37.91	159.00	172.30	39.02	11.91	15.00	30.70	213.19	30.26	53.99	24.31	53.67	12.88	4.62	38.40
3	418831	Transcript	0	0.00	0.00	1.94	0.00	0.00	0.00	0.00	6.87	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	2.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	343705	Transcript	0	0.00	0.00	14.70	18.98	0.00	5.87	2.92	11.15	7.06	5.47	4.21	3.07	5.10	3.19	0.00	2.98	0.00	4.62	0.00	0.00	2.05	18.09	0.00	2.63	0.00	6.18	0.00	0.00	0.00
5	IG48	Intergenic	0	0.87	0.51	2.27	0.68	0.08	1.99	1.34	0.19	4.74	1.19	0.30	0.21	0.38	1.75	2.39	7.88	16.82	0.55	0.19	0.14	0.42	0.41	0.16	2.53	0.37	0.39	0.19	0.01	0.17
6	IG48_SR2	SilentIntergenicRegion	0	0.29	1.32	2.29	0.00	0.00	5.64	0.83	0.00	10.81	1.97	0.98	0.42	1.24	1.73	2.01	19.34	45.92	0.53	0.44	0.00	0.78	0.25	0.00	10.29	0.20	0.86	0.50	0.22	0.00
7	IG48_AR1	ActiveIntergenicRegion	0	0.49	0.00	2.12	0.00	0.22	2.27	1.42	0.17	5.28	1.18	0.49	0.27	0.09	0.84	2.46	11.68	30.62	0.41	0.07	0.06	0.45	0.25	0.25	2.44	0.06	0.21	0.29	0.00	0.20
8	IG48_SR1	SilentIntergenicRegion	0	1.21	0.78	2.38	1.23	0.00	1.37	1.35	0.23	3.69	1.11	0.09	0.14	0.48	2.37	2.38	3.95	3.99	0.65	0.25	0.22	0.36	0.54	0.11	1.71	0.60	0.47	0.09	0.00	0.18
9	ER1a	ExonRegion	0	9.60	19.34	111.03	99.39	10.64	18.31	10.99	43.77	28.42	53.81	14.58	21.98	100.11	16.29	10.31	103.82	44.74	22.76	0.31	3.26	9.98	66.05	13.44	10.17	8.51	30.65	7.95	5.48	20.96
10	E1_Ab	KnownBoundary	0	32.38	54.49	324.22	388.89	36.25	65.88	39.71	151.24	98.54	186.31	52.01	68.67	316.37	54.59	40.46	388.61	133.93	93.75	0.00	15.05	27.28	237.84	44.57	29.97	27.43	102.65	23.21	14.38	54.84
11	ER1b	ExonRegion	0	10.09	26.38	294.20	151.70	23.69	41.91	28.32	109.00	81.54	109.17	23.11	51.40	277.94	34.32	13.45	211.22	146.00	28.42	2.09	6.28	19.58	125.56	25.92	19.93	16.10	53.17	14.51	6.46	49.38
12	E1_Da	NovelBoundary	0	0.00	0.00	2.32	0.00	0.00	1.84	0.00	2.54	2.50	0.00	0.00	1.54	0.00	1.06	0.00	3.82	3.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49
13	E1a_E2a	KnownJunction	0	7.73	12.70	31.04	135.89	7.37	1.46	8.47	43.99	35.36	26.76	4.37	8.86	53.98	23.11	6.98	6.58	44.25	0.00	7.87	7.44	11.99	33.84	9.26	5.20	9.09	5.66	6.46	1.80	0.00
14	I1	Intron	0	1.99	3.66	12.45	1.87	0.28	9.01	1.64	4.08	10.52	7.93	1.37	2.52	3.24	7.13	4.32	19.69	46.49	2.61	0.54	0.28	0.66	1.41	0.25	3.02	1.13	1.67	0.08	0.24	1.04
15	I1_SR1	SilentIntronRegion	0	1.99	3.66	12.46	1.87	0.28	9.01	1.64	4.09	10.53	7.93	1.37	2.52	3.24	7.13	4.32	19.70	46.51	2.61	0.54	0.28	0.66	1.41	0.25	3.02	1.13	1.67	0.08	0.24	1.04
16	E2_Aa	NovelBoundary	0	0.00	4.85	16.22	8.20	0.00	20.68	0.00	10.85	30.67	11.70	1.61	2.71	8.53	13.38	9.97	34.35	98.82	4.62	0.00	0.00	2.01	4.62	0.00	5.08	5.30	4.12	2.14	2.20	1.25
17	ER2a	ExonRegion	0	20.78	46.06	72.72	85.90	1.42	51.43	17.61	161.26	89.02	87.90	12.79	37.08	172.66	53.67	26.47	151.55	141.31	26.75	13.48	16.36	27.79	212.67	16.54	43.72	20.93	22.93	5.76	2.78	23.27
18	E2_Ab	KnownBoundary	0	14.63	65.73	88.12	100.08	0.00	138.16	38.96	240.32	199.43	197.17	23.98	74.00	361.97	70.50	49.43	445.38	233.87	89.13	0.00	11.74	65.34	200.94	28.66	54.37	22.09	47.72	9.34	3.77	50.97
19	E2_Da	KnownBoundary	0	16.93	37.33	115.48	124.89	14.00	83.99	79.93	162.78	100.46	356.99	74.53	76.53	430.25	65.78	43.45	417.68	221.51	78.60	16.18	7.44	33.97	85.27	54.47	41.45	33.19	164.36	23.26	8.45	73.52
20	E2a_E3a	KnownJunction	0	0.00	0.00	1.94	0.00	0.00	0.00	0.00	6.87	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	2.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER2b	ExonRegion	0	14.63	53.01	133.41	111.20	8.76	112.39	68.05	228.48	165.08	331.62	52.16	95.67	518.75	81.73	56.01	485.99	304.45	81.31	7.65	8.53	57.40	153.17	49.13	50.44	30.21	136.52	20.65	7.76	86.18
22	ER2c	ExonRegion	0	25.08	48.12	433.98	140.58	19.17	67.70	44.48	182.89	92.75	161.02	43.72	78.15	300.97	88.99	36.81	167.78	243.43	41.33	13.06	12.35	35.07	200.32	34.00	52.87	25.51	53.43	9.41	6.33	35.62
23	E2_Db	NovelBoundary	0	5.90	9.70	14.67	10.78	0.00	17.19	8.18	12.69	36.45	16.90	4.71	5.78	20.48	4.19	42.65	42.15	81.03	9.25	0.00	3.47	5.90	14.83	2.51	19.26	5.00	2.02	0.00	2.29	1.91
24	E2b_E3a	KnownJunction	0	44.95	92.10	438.10	247.61	13.56	135.90	56.18	263.86	138.80	227.21	63.81	89.64	395.92	104.80	36.67	172.81	226.24	51.50	24.28	28.78	44.12	307.75	49.59	81.35	30.65	81.88	18.19	2.11	46.52
25	E2b_E4a	KnownJunction	0	0.00	0.00	14.70	18.98	0.00	5.87	2.92	11.15	7.06	5.47	4.21	3.07	5.10	3.19	0.00	2.98	0.00	4.62	0.00	0.00	2.05	18.09	0.00	2.63	0.00	6.18	0.00	0.00	0.00
26	E2b_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	0.00	0.00	0.00	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I2	Intron	0	6.10	5.13	14.68	0.00	0.00	9.13	0.48	10.04	14.25	6.85	1.69	3.07	6.31	5.81	11.98	16.41	30.45	3.66	1.52	0.65	1.02	10.69	0.43	4.59	1.70	2.98	0.00	1.16	0.64
28	I2_SR1	SilentIntronRegion	0	6.16	5.18	14.81	0.00	0.00	9.21	0.47	10.13	14.38	6.91	1.71	3.10	6.37	5.86	12.10	16.55	30.74	3.69	1.53	0.66	1.02	10.79	0.43	4.64	1.71	3.01	0.00	1.17	0.64
29	E3_Aa	NovelBoundary	0	2.95	8.53	35.53	0.00	0.00	16.61	5.61	9.75	11.36	12.74	1.61	8.28	3.89	9.86	37.47	38.02	65.50	4.62	8.09	0.00	5.86	6.51	0.00	8.31	6.52	1.80	0.00	0.00	0.00
30	ER3a	ExonRegion	0	29.93	54.73	448.90	143.86	9.84	89.29	48.52	241.85	126.82	193.17	44.79	89.89	348.87	79.22	53.60	187.52	285.79	56.42	12.97	20.05	39.43	227.49	34.02	65.94	41.64	67.30	12.27	9.36	42.20
31	E3_Da	NovelBoundary	0	0.00	0.00	5.26	8.84	0.00	0.00	0.00	0.00	5.36	2.04	1.23	0.00	0.00	1.02	8.37	21.04	19.85	4.62	0.00	0.00	0.00	4.18	0.00	3.05	1.93	1.85	0.00	0.00	1.42
32	E3a_E4a	KnownJunction	0	14.57	74.36	368.12	159.61	14.00	103.75	47.26	203.74	116.24	123.95	32.58	57.65	304.02	55.88	64.78	173.50	275.22	36.99	8.09	15.38	26.03	199.82	42.99	76.03	42.28	53.47	4.17	11.46	42.39
33	E4_Aa	NovelBoundary	0	0.00	0.00	18.04	9.27	0.00	1.80	2.63	11.45	5.51	12.14	0.00	8.86	13.92	7.62	27.51	25.09	13.01	4.62	8.09	0.00	5.74	4.96	0.00	11.36	1.78	5.49	0.00	0.00	4.59
34	ER4a	ExonRegion	0	31.42	66.82	441.58	187.62	9.68	101.25	59.44	218.19	131.52	161.99	47.67	56.30	372.11	78.42	50.25	163.70	271.90	47.49	23.02	16.70	26.65	249.86	46.55	59.37	31.49	58.42	6.70	8.34	47.82
35	E4_Da	NovelBoundary	0	2.77	0.00	5.51	0.00	5.75	1.76	0.00	0.00	11.05	0.00	1.23	3.28	1.62	3.30	0.00	7.34	16.81	4.62	0.00	0.00	0.00	2.24	0.00	2.69	0.00	0.00	0.00	0.00	0.00
36	E4a_E5a	KnownJunction	0	43.18	59.82	372.80	194.77	19.75	84.83	92.17	203.44	150.77	187.03	62.48	46.87	349.43	71.48	49.63	170.52	220.30	66.78	32.37	18.52	21.66	228.65	50.63	47.01	27.24	53.69	10.83	4.45	48.56
37	I4	Intron	0	0.82	1.23	4.27	1.83	0.00	4.22	0.52	4.47	2.73	0.92	0.46	1.42	2.89	1.91	4.46	8.39	13.55	1.97	0.41	0.35	0.18	1.15	0.00	3.30	1.28	0.80	0.00	0.42	0.51
38	I4_SR1	SilentIntronRegion	0	0.83	1.24	4.30	1.84	0.00	4.24	0.52	4.49	2.74	0.93	0.46	1.43	2.91	1.92	4.49	8.43	13.61	1.98	0.41	0.35	0.18	1.16	0.00	3.32	1.29	0.81	0.00	0.42	0.52
39	E5_Aa	NovelBoundary	0	8.08	3.49	7.13	0.00	0.00	3.41	2.92	4.48	8.68	1.68	1.49	1.54	0.00	2.24	9.17	14.84	36.89	0.00	0.00	0.00	0.00	0.00	0.00	5.86	0.00	4.38	0.00	0.00	1.68
40	ER5a	ExonRegion	0	28.72	64.33	674.09	198.34	19.01	110.57	71.88	264.92	175.93	258.39	90.12	85.40	432.17	93.75	80.39	240.93	340.51	54.33	21.24	22.53	50.71	264.23	50.38	97.50	67.53	73.94	20.15	10.21	59.34
41	E5_Da	KnownBoundary	0	29.20	58.66	849.62	211.38	40.67	154.31	79.24	336.17	236.49	292.56	72.60	103.64	449.23	80.49	112.81	258.34	377.91	60.75	40.46	41.43	68.87	264.33	46.20	100.67	54.52	65.53	29.22	14.65	61.07
42	ER5b	ExonRegion	0	28.43	67.28	668.08	186.69	18.22	113.57	72.36	278.88	196.05	172.75	55.08	97.99	386.35	90.94	59.50	232.46	361.12	51.91	12.40	18.88	47.44	271.21	40.12	71.02	34.01	73.98	14.31	13.13	49.39
43	E5_Db	KnownBoundary	0	11.09	88.52	460.35	174.28	0.00	85.52	53.32	211.06	123.79	101.22	24.55	81.75	266.41	58.43	8.37	147.64	260.90	33.13	0.00	15.30	21.78	207.45	25.61	29.79	25.27	40.90	4.57	9.97	34.07
44	ER5c	ExonRegion	0	24.57	66.04	432.55	126.61	13.13	88.39	55.31	238.79	207.64	140.48	41.74	68.49	332.83	68.68	66.75	200.38	245.92	42.81	11.15	12.97	38.01	265.78	27.75	70.45	33.76	48.48	12.50	6.27	47.74