Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TOMM34	Gene	0	131.64	155.16	212.95	304.83	388.36	185.88	96.33	178.96	182.86	181.80	192.92	248.87	279.47	177.85	148.44	225.75	139.53	177.85	243.37	155.94	161.58	260.53	304.89	135.89	242.66	330.34	223.38	241.62	284.07
2	372813	Transcript	0	141.62	148.09	198.85	302.30	379.50	178.78	88.14	155.71	151.59	172.16	217.03	248.20	209.62	186.93	109.22	214.92	117.29	168.91	259.17	151.22	132.92	271.06	303.93	133.85	275.54	253.96	195.49	194.36	211.30
3	372810	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	0.49	1.71	4.20	38.23	41.59	2.11	0.00	1.66	2.72	0.28	0.00	4.19	3.97	0.81	4.08	8.50	1.06	2.17	7.13	0.52	4.37	6.45	13.68	1.15	2.87	5.96	4.56	5.49	5.19
5	E1_Ab	KnownBoundary	0	2.30	9.50	22.70	163.93	214.13	10.97	2.63	11.60	15.47	1.60	0.00	21.96	17.83	3.61	16.14	53.17	4.75	9.25	8.09	2.98	13.24	34.62	53.98	5.50	10.91	34.33	15.85	22.38	24.23
6	ER1b	ExonRegion	0	66.12	44.52	139.54	202.19	321.71	58.47	24.93	64.47	40.38	52.33	43.86	89.25	72.10	59.37	32.77	108.48	56.24	80.26	62.23	71.27	55.46	157.82	140.71	33.08	74.74	152.51	73.59	103.37	109.72
7	E1_Da	NovelBoundary	0	4.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.16	0.00	2.29	0.00
8	E1a_E2a	KnownJunction	0	146.34	88.61	26.81	59.32	48.93	66.18	17.85	160.64	67.21	31.04	24.61	72.71	79.99	99.44	41.46	135.10	34.71	57.79	105.20	163.08	52.71	395.21	103.77	85.30	120.59	102.87	26.79	58.14	79.33
9	I1	Intron	0	1.85	0.00	0.36	1.54	0.35	1.58	0.14	0.26	1.65	1.14	0.68	1.11	0.28	2.67	3.23	5.02	1.93	1.59	2.29	0.40	2.05	0.26	0.26	0.93	1.64	1.13	0.00	1.17	0.62
10	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.24	0.00	4.10	0.00	1.26	0.00	0.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I1_AR1	ActiveIntronRegion	0	1.25	0.00	0.39	0.83	0.57	1.37	0.00	0.00	1.09	0.88	0.42	0.43	0.00	2.08	0.00	3.81	0.87	2.06	2.10	0.53	2.15	0.21	0.00	0.00	1.33	0.55	0.00	1.14	0.16
12	I1_SR2	SilentIntronRegion	0	3.46	0.00	0.39	3.31	0.00	2.22	0.47	0.85	3.14	1.91	1.37	2.70	0.89	4.38	10.39	7.65	4.48	0.74	3.22	0.00	2.33	0.42	0.83	2.98	2.64	2.54	0.00	1.50	1.69
13	Ix	Intron	0	2.94	0.53	0.09	0.00	1.34	3.17	0.44	0.51	1.73	1.82	0.33	1.05	0.43	3.33	1.01	3.47	2.54	3.44	2.81	1.67	1.72	0.00	0.40	1.18	1.26	1.81	0.91	3.22	0.92
14	Ix_SR1	SilentIntronRegion	0	3.17	0.00	0.00	0.00	0.90	2.54	0.56	0.17	1.82	2.27	0.22	0.80	0.48	3.35	0.85	3.55	2.21	2.56	2.66	1.53	1.32	0.00	0.17	0.40	1.19	1.02	1.36	4.22	0.93
15	Ix_AR1	ActiveIntronRegion	0	2.62	1.31	0.23	0.00	1.99	4.11	0.27	1.00	1.60	1.18	0.49	1.42	0.35	3.32	1.25	3.37	3.05	4.76	3.04	1.87	2.33	0.00	0.74	2.34	1.36	2.99	0.25	1.77	0.91
16	E2_Aa	NovelBoundary	0	0.00	0.00	1.37	0.00	0.00	4.87	0.00	0.00	0.00	3.75	1.33	0.00	1.97	5.21	0.00	3.14	3.53	13.87	16.18	3.56	1.72	0.00	2.46	4.67	0.00	6.14	0.00	4.49	0.00
17	ER2a	ExonRegion	0	136.52	122.86	67.16	104.13	138.14	160.93	77.59	172.23	109.26	151.70	149.49	227.44	176.44	177.92	104.23	276.36	121.15	207.42	213.30	172.72	143.07	259.41	324.06	107.64	238.03	328.06	123.57	196.24	242.96
18	E2_Da	NovelBoundary	0	0.00	0.00	1.37	0.00	6.19	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	1.86	0.00	0.00	4.16	0.00	0.00	11.33	3.77	0.00	0.00	2.81	0.00	0.00	0.00	3.95	0.00
19	E2a_E3a	KnownJunction	1	105.35	87.64	99.98	170.18	256.13	102.98	69.29	129.74	92.85	139.13	218.06	288.34	197.40	174.99	98.86	138.16	182.75	150.26	178.03	142.74	87.08	183.43	418.08	83.44	178.40	432.40	269.61	342.60	321.65
20	Ix	Intron	0	1.49	2.02	1.26	1.15	2.62	1.92	0.97	2.17	2.32	1.78	1.53	1.29	0.73	3.01	4.10	2.95	2.32	1.45	3.43	0.85	2.37	0.10	0.10	1.73	2.53	0.76	1.67	1.22	1.76
21	Ix_AR3	ActiveIntronRegion	0	2.64	4.93	1.19	1.39	3.79	2.56	1.72	1.43	2.35	2.18	0.92	1.23	0.25	2.77	4.45	1.57	2.76	0.75	4.34	0.53	1.26	0.00	0.00	0.90	2.72	0.61	2.84	1.80	2.01
22	Ix_SR3	SilentIntronRegion	0	0.77	1.35	1.45	0.00	2.66	1.39	0.99	2.76	2.48	2.01	1.14	1.90	0.44	2.31	4.03	3.78	2.34	1.84	3.92	0.38	2.03	0.00	0.00	2.01	3.15	0.43	2.25	0.73	1.87
23	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	0.00	0.00	2.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	Ix_SR2	SilentIntronRegion	0	0.89	0.96	0.88	0.00	4.05	0.68	0.84	1.62	3.41	0.96	3.95	0.55	1.65	3.67	3.82	2.28	2.19	0.00	0.00	0.89	3.59	0.00	0.75	1.17	2.18	0.00	0.00	0.86	1.63
25	Ix_SR1	SilentIntronRegion	0	0.00	0.00	2.24	0.00	0.00	2.75	0.00	5.40	1.12	1.35	0.00	1.24	3.29	4.54	0.00	5.06	5.01	5.46	0.00	1.31	1.62	0.00	0.00	2.44	1.14	0.00	0.00	1.63	1.34
26	Ix_AR1	ActiveIntronRegion	0	1.94	0.00	1.12	4.33	0.00	2.96	0.00	2.15	1.28	1.31	1.80	0.58	1.18	4.33	4.44	3.55	1.45	2.42	3.86	2.26	4.06	0.54	0.00	2.77	1.29	2.37	0.00	1.65	1.29
27	E3_Aa	NovelBoundary	0	3.01	0.00	4.63	0.00	0.00	5.52	0.00	2.54	1.55	0.00	0.00	0.00	0.00	10.79	0.00	12.93	5.54	4.62	8.09	0.00	1.60	0.00	1.87	2.81	1.48	4.12	0.00	9.08	2.05
28	ER3a	ExonRegion	0	114.95	92.61	182.56	178.23	403.73	117.24	81.80	157.40	94.91	142.22	163.99	235.80	194.02	178.77	72.31	170.77	141.74	131.90	148.74	150.73	98.29	247.94	330.72	90.19	175.10	309.82	220.14	252.10	217.27
29	E3_Da	KnownBoundary	0	114.84	98.89	326.78	267.89	479.55	165.25	69.34	187.07	144.07	195.65	169.94	211.95	186.86	188.97	114.21	185.82	137.89	183.53	210.18	196.74	120.77	259.42	266.49	130.58	217.35	243.71	168.03	199.50	169.36
30	E3a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER3b	ExonRegion	0	177.04	165.58	365.44	438.93	559.09	203.37	90.73	232.06	157.15	193.73	240.75	255.86	225.02	234.35	119.70	255.93	138.38	213.26	341.28	215.96	143.88	338.56	326.75	188.40	361.52	260.96	188.33	200.93	225.39
32	E3_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	1.37	0.00	0.00	0.00	0.00	2.02	0.00	0.00	0.00	0.00	8.09	3.23	2.05	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00
33	E3b_E4a	KnownJunction	0	225.80	206.02	228.39	432.68	591.25	183.32	132.28	219.57	200.23	185.47	269.75	339.93	219.63	266.90	206.30	311.73	166.23	225.14	323.70	205.26	144.72	376.74	377.60	166.77	347.41	259.59	165.05	231.04	252.82
34	E3b_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00
35	Ix_AR1	ActiveIntronRegion	0	0.00	7.57	1.62	0.00	2.05	0.37	0.00	0.00	0.67	4.91	0.00	0.00	0.78	0.15	6.06	2.41	1.79	2.05	0.00	0.00	0.22	0.83	0.00	2.58	0.86	1.89	0.00	1.04	1.50
36	Ix	Intron	0	2.14	0.32	1.50	0.00	1.95	0.82	0.20	0.92	1.73	2.45	2.61	2.77	0.39	1.81	3.78	4.81	2.83	3.21	0.32	0.28	2.00	0.36	0.54	0.86	1.72	1.26	0.00	0.82	0.60
37	Ix_SR2	SilentIntronRegion	0	1.78	0.67	1.04	0.00	3.04	1.01	0.42	0.76	1.28	2.43	2.00	2.96	0.27	0.92	2.87	5.49	4.08	3.21	0.00	0.00	1.72	0.00	0.37	0.00	1.63	1.30	0.00	0.62	1.15
38	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	2.25	4.33	4.76	2.68	0.00	2.42	5.60	0.00	6.85	6.82	0.00	0.00	2.85	0.00	0.00	0.00	4.29	0.00	0.00	1.63	1.34
39	Ix_SR1	SilentIntronRegion	0	2.57	0.00	2.01	0.00	0.98	0.65	0.00	1.10	2.18	2.46	3.18	2.63	0.52	2.68	4.66	4.33	1.56	3.17	0.64	0.55	2.27	0.70	0.72	1.72	1.76	1.26	0.00	0.99	0.06
40	E4_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	3.49	8.24	0.00	3.05	0.00	1.61	0.00	1.53	1.02	9.17	7.34	8.80	0.00	8.09	0.00	0.00	0.00	2.46	2.21	10.23	0.00	0.00	6.34	0.00
41	ER4a	ExonRegion	0	213.82	214.20	238.89	368.94	458.57	284.48	130.35	215.93	203.91	257.92	329.97	345.96	314.47	271.80	134.12	307.60	181.73	245.18	343.11	214.34	221.10	383.10	455.73	196.43	398.87	364.13	234.31	243.57	299.32
42	E4_Da	NovelBoundary	0	2.36	9.50	4.91	0.00	0.00	3.07	4.92	4.53	0.00	1.52	0.00	3.01	0.00	3.37	0.00	3.82	8.22	9.25	0.00	3.39	1.64	2.14	0.00	0.00	1.89	1.93	0.00	1.93	0.00
43	E4a_E5a	KnownJunction	0	167.58	203.50	240.53	347.70	451.10	257.06	118.38	180.00	245.45	259.61	303.12	386.80	325.48	263.40	128.36	312.88	151.46	235.03	387.54	183.10	165.05	414.95	469.05	180.34	363.85	446.78	385.26	336.31	352.09
44	E4a_E6a	NovelJunction	0	40.41	36.94	36.00	16.61	113.03	42.20	12.59	19.51	48.36	26.20	21.57	38.70	29.39	44.00	60.00	51.94	49.68	13.87	24.28	30.27	22.70	36.56	19.40	28.17	61.87	13.60	14.46	12.18	17.50
45	Ix	Intron	0	4.82	2.82	1.49	5.22	3.39	2.18	0.53	1.89	1.77	2.48	2.91	2.75	0.45	5.04	4.50	5.67	4.60	3.85	6.45	1.86	2.36	0.18	0.48	1.42	2.51	1.77	0.97	2.97	1.02
46	Ix_SR2	SilentIntronRegion	0	4.09	1.68	1.90	6.03	3.01	1.77	0.57	2.03	2.32	2.73	2.52	2.66	0.16	5.03	4.53	5.31	4.77	4.00	6.99	2.23	1.92	0.20	0.58	1.42	2.49	2.20	0.00	2.69	1.09
47	Ix_SR1	SilentIntronRegion	0	6.02	4.64	0.93	4.12	4.12	2.90	0.51	1.75	0.95	2.17	3.44	2.97	0.89	5.17	4.65	6.39	4.54	3.64	5.93	1.40	3.13	0.15	0.34	1.45	2.66	1.19	2.47	3.49	0.96
48	E5_Aa	NovelBoundary	0	2.42	0.00	6.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.86	0.00	9.73	26.91	10.94	4.88	0.00	0.00	0.00	9.39	4.81	0.00	3.05	5.04	2.19	0.00	0.00	0.00
49	Ix_AR1	ActiveIntronRegion	0	2.63	0.00	0.31	3.32	0.00	0.00	0.00	0.17	0.82	0.00	4.54	1.41	0.00	1.73	0.00	0.69	0.00	1.74	0.00	0.00	0.13	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00
50	ER5a	ExonRegion	0	204.14	242.82	310.83	479.73	546.03	317.81	144.16	235.32	245.98	302.57	375.28	400.30	376.25	265.44	163.08	300.09	176.18	253.51	398.24	233.33	249.39	375.87	483.04	194.64	448.45	437.03	380.35	336.27	339.54
51	E5_Da	NovelBoundary	0	0.00	0.00	2.34	0.00	7.22	8.86	0.00	2.39	0.00	0.00	0.00	2.80	0.00	7.80	0.00	3.82	4.34	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57
52	E5a_E6a	KnownJunction	0	176.25	250.71	370.58	457.91	644.16	276.48	123.64	273.12	232.69	255.69	322.45	353.91	360.03	260.32	157.86	361.23	197.50	214.48	282.79	243.05	248.88	408.29	472.40	222.09	370.82	312.54	309.27	274.76	398.94
53	ER5b	ExonRegion	0	220.29	246.37	382.78	517.20	586.46	316.61	147.06	314.49	229.61	260.08	347.24	364.38	393.19	267.62	147.14	331.30	192.19	224.41	286.98	274.81	244.24	448.14	468.75	231.54	440.95	384.62	332.34	290.07	412.11
54	Ix_SR2	SilentIntronRegion	0	2.78	1.54	1.31	3.14	0.68	3.06	1.01	1.61	1.61	2.03	1.25	1.16	0.53	2.83	2.03	2.70	3.78	1.87	5.33	0.76	2.12	0.56	0.37	0.25	2.44	1.87	1.10	2.04	1.09
55	Ix_AR1	ActiveIntronRegion	0	2.48	4.33	0.63	0.00	7.30	3.78	0.29	0.41	1.55	2.25	1.44	1.53	0.00	2.79	2.32	3.42	4.76	3.99	3.28	1.97	2.44	1.02	0.45	1.87	1.64	2.23	2.44	3.24	1.23
56	Ix_SR1	SilentIntronRegion	0	2.04	2.97	0.68	0.75	2.88	2.81	0.74	1.59	2.29	2.31	1.23	1.86	0.61	2.55	5.43	3.54	1.96	2.69	3.87	1.10	2.56	0.09	0.66	1.57	2.22	0.41	0.00	1.54	0.60
57	E6_Aa	NovelBoundary	0	9.79	3.97	4.14	0.00	28.00	3.57	0.00	2.24	8.01	4.71	1.55	15.78	1.37	4.17	24.72	28.46	6.39	9.25	8.09	3.89	5.05	0.00	0.00	3.05	3.86	1.97	2.19	1.98	2.97
58	ER6a	ExonRegion	0	236.86	272.62	376.76	499.74	645.56	384.84	210.21	324.31	286.45	377.25	405.08	491.96	505.60	313.44	246.29	377.40	250.81	271.39	383.13	254.04	335.22	424.25	557.57	242.03	450.23	576.91	491.92	514.72	513.86
59	E6_Da	NovelBoundary	0	8.14	12.41	5.28	0.00	25.05	12.74	0.00	12.04	8.16	7.31	1.30	5.45	0.00	6.94	17.94	13.31	10.04	0.00	0.00	0.00	4.05	1.99	0.00	5.80	5.15	10.86	0.00	11.28	1.39
60	E6a_E7a	KnownJunction	0	257.00	335.64	403.05	726.45	804.21	539.95	325.15	439.28	435.01	572.42	492.90	582.91	695.48	365.78	383.89	537.86	284.31	376.04	631.21	313.60	498.13	478.20	659.80	256.49	582.83	898.54	575.80	634.66	644.62
61	Ix	Intron	0	5.24	1.43	5.19	4.77	8.66	7.32	2.23	4.08	4.11	4.16	1.58	3.55	2.01	5.73	15.10	14.72	10.59	6.41	4.96	0.61	2.85	3.20	0.00	4.29	4.12	4.88	0.41	0.00	2.67
62	Ix_SR1	SilentIntronRegion	0	4.70	0.00	5.90	6.86	4.29	6.68	0.82	4.73	3.53	3.96	1.82	3.94	2.95	6.65	10.17	11.99	11.54	7.12	6.89	1.08	3.92	3.30	0.00	3.14	4.67	3.55	0.72	0.00	4.24
63	Ix_AR1	ActiveIntronRegion	0	6.06	3.35	4.35	2.09	14.64	8.30	4.15	3.31	4.96	4.51	1.30	3.12	0.81	4.63	21.95	18.64	9.56	5.60	2.49	0.00	1.48	3.13	0.00	5.90	3.47	6.74	0.00	0.00	0.64
64	E7_Aa	NovelBoundary	0	5.25	9.31	7.28	0.00	6.78	22.06	0.00	4.83	1.46	7.59	0.00	4.52	3.25	7.40	26.11	29.45	10.71	0.00	0.00	3.97	9.19	2.19	0.00	10.65	8.49	7.42	0.00	1.89	11.06
65	ER7a	ExonRegion	0	125.80	172.24	226.88	329.69	407.14	187.06	103.06	195.05	231.98	188.50	181.33	256.61	340.11	180.60	196.31	238.42	154.58	190.72	265.50	158.26	172.82	260.20	300.19	147.03	228.87	378.84	245.79	269.70	339.71
66	E7_Da	KnownBoundary	0	6.02	8.53	1.32	18.12	31.39	8.56	5.84	4.53	3.35	7.67	0.00	8.16	11.24	6.43	0.00	16.29	6.66	13.87	16.18	0.00	1.97	8.56	2.46	8.37	7.65	1.76	20.13	6.69	11.55
67	ER7b	ExonRegion	0	2.50	2.81	3.66	9.86	8.90	3.29	1.11	5.42	5.71	5.52	0.37	4.36	2.53	5.85	8.94	7.73	5.99	8.13	13.17	6.03	1.91	1.74	1.69	9.21	5.78	3.27	10.60	6.90	4.72