Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CD1C	Gene	0	635.87	260.42	462.17	86.33	0.00	28.51	162.97	573.16	9.44	30.40	198.64	44.24	119.58	2005.81	862.13	164.01	1224.75	160.87	94.67	499.00	31.13	61.54	34.16	328.87	1149.56	275.44	122.27	49.81	17.14
2	368169	Transcript	0	32.82	41.39	39.92	16.37	0.00	3.10	14.41	23.06	0.78	1.67	22.86	4.72	7.17	190.45	137.46	22.21	83.08	21.13	20.08	76.62	4.64	3.21	1.91	36.18	67.55	19.30	19.38	3.65	1.22
3	368170	Transcript	0	774.82	473.21	485.10	87.78	0.00	38.53	233.01	945.16	43.82	39.89	235.46	72.98	212.58	2267.96	1044.53	103.76	1618.42	174.61	85.46	577.75	24.64	84.03	39.75	520.05	1747.34	330.57	76.65	72.69	26.70
4	443761	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	469012	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	34.14	53.26	56.66	30.82	0.00	0.59	11.81	8.02	0.00	1.65	27.71	5.57	6.50	168.65	56.41	9.04	36.85	27.49	23.60	29.51	1.73	3.48	2.45	19.05	87.39	21.33	27.47	3.96	0.29
7	ER1b	ExonRegion	0	1032.70	426.65	800.12	155.18	0.00	44.95	274.31	668.06	8.14	53.45	410.16	74.02	175.11	3706.23	1152.01	298.75	2138.61	289.73	177.72	736.72	39.40	92.31	58.56	429.65	1905.37	527.59	333.07	93.77	20.50
8	E1_Da	NovelBoundary	0	13.74	0.00	11.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	46.26	8.77	9.94	19.02	0.00	0.00	0.00	0.00	0.00	0.00	5.86	10.27	0.00	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	0	962.76	244.12	1954.82	234.46	0.00	47.15	188.47	765.35	5.97	25.29	244.88	48.07	140.18	3076.20	1047.42	283.20	1848.10	267.78	97.11	780.43	55.15	122.95	42.55	438.69	1652.44	415.67	134.63	65.96	17.73
10	I1	Intron	0	16.92	6.46	5.49	1.10	0.00	0.92	1.55	5.57	0.23	0.52	3.42	0.44	0.96	50.09	13.68	6.35	48.59	5.71	1.64	3.84	0.58	0.46	0.46	4.63	12.97	3.79	0.56	0.75	0.10
11	I1_AR1	ActiveIntronRegion	0	16.95	6.48	5.50	1.10	0.00	0.92	1.55	5.58	0.23	0.52	3.42	0.44	0.97	50.19	13.71	6.36	48.69	5.72	1.64	3.84	0.59	0.46	0.46	4.64	12.99	3.79	0.56	0.75	0.10
12	E2_Aa	NovelBoundary	0	16.28	0.00	8.15	0.00	0.00	1.96	0.00	4.43	0.00	1.88	1.61	0.00	5.73	45.73	9.97	3.60	70.14	10.02	0.00	0.00	0.00	0.00	0.00	7.66	19.44	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	1283.99	449.17	1278.52	348.71	0.00	51.52	227.09	1022.55	5.83	68.49	335.97	74.91	187.35	3868.88	1405.84	302.75	2098.38	296.42	153.98	856.35	56.07	125.23	55.18	511.88	2155.94	469.29	165.11	89.52	36.14
14	E2_Ab	KnownBoundary	0	1181.12	318.97	916.89	245.46	0.00	29.16	222.85	811.43	2.68	55.08	348.14	85.30	197.05	3403.48	1349.59	274.78	1885.44	285.89	113.29	744.46	33.97	100.83	77.81	451.01	1755.86	496.56	151.97	89.77	40.44
15	ER2b	ExonRegion	0	1510.26	462.62	907.93	158.52	0.00	46.86	283.96	1096.15	10.36	60.15	384.21	86.55	217.48	4064.73	1550.25	307.54	2232.48	308.58	187.82	941.01	41.44	136.86	81.04	648.41	2366.26	434.36	237.80	85.56	30.53
16	E2_Da	NovelBoundary	0	17.16	6.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	0.00	0.00	34.61	9.97	7.19	27.78	0.00	0.00	0.00	0.00	0.00	0.00	2.27	1.93	3.52	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	0	1487.79	496.97	955.44	155.30	0.00	70.98	399.47	1306.01	12.27	92.63	416.18	96.14	259.18	4142.97	1666.31	316.09	2355.57	364.87	242.77	845.10	68.83	183.29	107.51	684.53	2655.15	497.42	333.32	141.13	18.29
18	I2	Intron	0	4.56	5.73	1.78	0.00	0.00	1.80	0.00	0.75	0.37	1.18	1.27	0.00	0.32	26.74	8.90	3.43	25.17	3.36	1.57	3.19	0.00	0.00	0.00	2.99	6.32	1.16	0.00	0.00	0.00
19	I2_AR1	ActiveIntronRegion	0	4.58	5.74	1.79	0.00	0.00	1.81	0.00	0.76	0.37	1.19	1.27	0.00	0.32	26.83	8.93	3.44	25.25	3.38	1.57	3.20	0.00	0.00	0.00	3.00	6.34	1.16	0.00	0.00	0.00
20	E3_Aa	NovelBoundary	0	5.90	0.00	2.59	0.00	0.00	0.00	2.63	2.39	0.00	0.00	0.00	0.00	0.00	36.23	8.37	3.44	12.67	4.62	0.00	4.13	0.00	0.00	0.00	5.98	18.83	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	1431.28	502.99	962.91	150.19	0.00	65.95	383.24	1353.83	19.77	68.75	402.97	89.33	241.44	3984.35	1542.95	329.34	2498.98	340.76	171.58	930.40	81.13	133.07	78.34	689.81	2481.76	528.90	234.98	90.18	42.66
22	E3_Da	NovelBoundary	0	3.01	4.46	1.30	0.00	0.00	3.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	23.66	0.00	0.00	14.11	0.00	0.00	3.80	0.00	0.00	0.00	0.00	10.34	0.00	0.00	0.00	0.00
23	E3a_E4a	KnownJunction	0	1434.00	446.75	948.78	249.12	0.00	46.77	298.66	1397.67	18.39	47.97	367.59	91.72	234.79	3501.43	1664.72	240.67	2870.43	305.28	137.35	806.90	65.50	162.33	47.67	525.36	1500.63	501.41	181.00	83.84	31.23
24	I3	Intron	0	4.28	1.43	2.97	0.00	0.00	1.22	0.45	0.82	0.00	0.32	2.11	0.41	0.29	21.49	8.96	2.99	12.25	2.56	1.42	2.71	0.32	0.00	0.00	2.86	6.66	1.74	0.81	0.00	0.00
25	I3_SR1	SilentIntronRegion	0	4.37	1.46	3.02	0.00	0.00	1.25	0.46	0.83	0.00	0.33	2.16	0.42	0.29	21.94	9.09	3.06	12.50	2.61	1.45	2.77	0.32	0.00	0.00	2.93	6.80	1.78	0.83	0.00	0.00
26	E4_Aa	NovelBoundary	0	13.92	4.46	4.83	0.00	0.00	1.69	0.00	0.00	0.00	0.00	0.00	1.17	0.00	32.33	16.74	7.04	17.78	4.62	0.00	6.29	0.00	0.00	0.00	3.05	10.27	0.00	0.00	0.00	0.00
27	ER4a	ExonRegion	0	1160.27	503.97	802.66	127.32	0.00	46.98	322.83	1351.25	16.57	52.68	351.87	89.60	273.69	3573.77	1762.96	267.19	2517.34	306.17	170.89	868.70	53.81	114.22	64.54	603.25	2078.27	581.02	166.26	101.23	29.80
28	E4_Da	NovelBoundary	0	183.44	58.36	75.77	18.55	0.00	10.93	23.63	134.82	8.19	3.87	10.12	11.11	25.54	636.85	375.12	137.39	741.84	50.73	16.18	235.53	8.74	6.13	1.82	87.63	135.97	59.48	1.94	19.01	3.24
29	E4a_E5a	KnownJunction	0	867.20	477.29	245.54	54.14	0.00	47.00	211.41	903.15	68.91	26.76	191.07	59.31	213.26	2235.45	1127.15	83.77	1161.88	218.85	56.65	617.35	24.31	111.33	30.24	621.90	1981.51	239.89	58.74	70.77	19.64
30	E4a_E6a	KnownJunction	0	259.95	36.94	75.77	9.92	0.00	9.02	47.60	254.95	9.41	9.35	44.00	2.53	70.82	746.43	343.43	34.27	252.35	28.51	56.42	101.55	11.07	70.40	15.32	182.98	257.96	200.84	64.36	47.76	9.18
31	ER4b	ExonRegion	0	1171.77	526.05	358.05	65.12	0.00	48.57	269.05	1244.83	49.06	34.86	237.91	67.26	284.79	3271.59	1486.83	157.75	1667.25	274.22	109.48	844.14	36.00	157.18	47.88	791.83	2499.43	432.80	134.92	104.17	23.39
32	I4	Intron	0	138.84	107.48	33.66	14.10	0.00	11.03	20.44	65.20	3.56	7.65	39.62	8.39	23.49	620.00	330.75	125.80	772.84	59.23	24.66	315.91	10.36	9.00	6.02	121.11	182.78	45.19	24.11	7.65	2.63
33	I4_AR1	ActiveIntronRegion	0	147.93	113.49	36.17	16.35	0.00	10.97	22.03	69.92	3.74	7.92	43.39	9.45	25.55	670.59	352.66	133.46	848.10	61.22	24.57	335.36	10.40	9.71	6.43	128.91	195.40	48.86	26.09	8.03	2.98
34	I4_SR1	SilentIntronRegion	0	87.65	74.27	19.27	0.64	0.00	11.80	11.35	38.30	2.61	6.21	17.70	2.15	11.49	328.51	207.22	82.96	332.83	49.18	26.27	207.07	10.57	4.98	3.70	77.07	111.39	24.09	12.74	5.49	0.55
35	E5_Aa	NovelBoundary	0	115.97	154.05	73.70	16.82	0.00	9.90	10.36	76.24	0.00	7.91	43.24	7.74	39.65	900.49	668.92	170.21	1122.15	60.11	105.20	416.14	9.63	11.04	6.99	198.95	209.01	24.42	77.73	7.50	2.94
36	ER5a	ExonRegion	0	664.59	499.78	388.55	60.59	0.00	29.43	180.84	785.82	27.63	30.70	248.29	65.13	170.88	2358.78	1070.02	135.32	1620.57	171.67	110.71	665.51	19.97	71.61	32.51	501.90	1517.15	280.89	102.97	51.34	25.44
37	E5_Da	NovelBoundary	0	227.80	158.03	23.44	32.35	0.00	11.66	46.97	118.74	2.71	18.41	62.26	8.52	37.29	988.03	835.35	208.46	1147.61	64.73	40.46	415.65	18.73	15.95	7.39	222.87	375.03	70.72	31.91	7.23	1.42
38	E5a_E6a	KnownJunction	0	792.65	442.58	821.22	148.61	0.00	39.17	306.79	1146.51	34.93	62.20	267.03	94.49	253.61	2209.66	936.40	92.18	2072.81	133.31	89.02	450.38	29.64	69.13	56.49	436.35	1743.36	470.94	68.23	95.97	35.03
39	I5	Intron	0	123.70	70.73	10.66	2.41	0.00	4.61	8.12	79.69	3.00	7.27	14.77	7.45	12.82	500.93	289.54	74.96	369.63	51.39	23.58	244.42	8.14	9.68	4.85	135.69	167.85	29.00	17.21	4.38	1.34
40	I5_SR1	SilentIntronRegion	0	125.35	71.65	10.80	2.44	0.00	4.67	8.22	80.69	3.04	7.36	14.97	7.54	12.99	507.41	293.29	75.94	374.48	52.04	23.84	247.58	8.24	9.81	4.92	137.42	170.04	29.39	17.44	4.43	1.36
41	E6_Aa	NovelBoundary	0	226.74	126.42	76.12	9.71	0.00	13.01	17.68	105.90	8.77	3.04	46.06	6.90	15.06	826.13	437.71	123.09	967.58	38.27	32.37	276.63	17.29	23.34	7.39	222.57	192.19	80.21	43.14	8.54	7.23
42	ER6a	ExonRegion	0	647.64	293.98	549.03	118.93	0.00	29.35	182.62	670.26	28.63	32.39	170.67	51.19	178.88	1977.84	1144.77	150.13	1189.31	154.18	96.62	600.87	40.11	82.85	41.20	502.09	1608.08	390.74	101.10	75.06	22.86
43	E6_Da	KnownBoundary	0	192.41	165.98	71.73	18.12	0.00	14.85	32.50	110.98	1.28	7.91	35.18	5.87	23.88	539.65	489.73	82.77	303.67	41.61	8.09	233.13	8.34	16.29	5.96	150.79	298.08	57.76	28.18	16.22	2.58
44	E6_Db	KnownBoundary	0	29.85	9.70	1.52	0.00	0.00	0.00	14.59	40.41	0.00	2.00	8.07	1.54	0.00	68.22	55.01	22.95	26.31	0.00	0.00	99.24	0.00	4.96	2.31	24.34	32.85	21.71	2.53	2.29	0.00
45	E6_Dc	KnownBoundary	0	43.06	4.46	16.44	0.00	0.00	7.44	5.55	71.02	1.86	0.00	21.64	2.89	1.85	177.72	94.88	38.94	126.01	4.62	8.09	117.27	3.69	7.24	0.00	36.73	53.99	30.94	13.42	6.47	3.10
46	ER6b	ExonRegion	0	165.63	74.66	74.16	0.00	0.00	9.75	29.87	134.57	1.53	6.43	47.06	7.20	12.75	512.07	382.88	75.46	330.02	50.12	42.38	293.08	8.69	21.80	1.64	139.24	240.91	57.29	21.15	13.34	4.64
47	ER6c	ExonRegion	0	77.82	22.49	33.83	0.00	0.00	8.04	17.68	113.16	1.38	1.44	31.49	3.33	1.90	291.86	187.41	54.51	178.77	22.46	26.11	208.42	5.92	16.92	0.83	62.55	99.39	42.43	17.61	7.02	3.51
48	ER6d	ExonRegion	0	31.50	29.52	23.17	1.92	0.00	5.60	17.00	38.09	1.55	1.68	18.00	3.88	7.84	212.25	218.51	35.37	129.31	14.77	16.56	123.73	7.54	2.93	1.36	53.30	47.71	17.26	11.29	3.34	2.16