Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GNRHR2	Gene	0	4.24	3.09	3.94	20.11	6.73	3.00	5.66	2.63	2.84	4.41	3.82	3.17	2.35	4.13	7.56	4.25	7.33	3.88	3.52	3.01	4.54	2.35	1.63	3.13	4.94	2.75	4.45	8.98	2.69
2	312753	Transcript	0	6.28	0.79	10.25	51.72	16.19	5.21	4.56	6.95	1.14	4.47	1.45	4.62	2.15	6.07	11.53	4.87	10.77	4.78	4.09	4.29	2.72	4.66	2.46	3.08	2.83	2.61	4.85	5.52	2.39
3	469718	Transcript	1	3.16	4.90	3.04	6.65	4.70	6.12	4.60	0.24	3.90	5.28	10.88	3.27	1.46	6.92	14.59	3.93	4.33	4.44	3.18	2.56	9.69	0.22	1.24	4.82	6.75	2.25	6.20	22.44	1.42
4	361928	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	430578	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	IG38_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.35	0.94	0.00	0.00	0.00	0.00	0.65	0.03	0.00	1.47	0.00	0.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.07	0.00	0.00	0.00	0.00	4.83	0.00
7	ER1a	ExonRegion	0	5.41	1.59	10.39	59.57	19.09	3.54	6.43	7.16	2.28	1.72	1.70	4.29	0.39	5.78	11.86	7.21	12.19	4.09	3.66	2.97	4.01	3.92	3.11	1.85	2.79	3.66	7.87	7.78	3.45
8	E1_Ab	KnownBoundary	0	7.85	0.00	2.59	0.00	17.98	0.00	0.00	14.58	2.77	4.95	0.00	4.01	0.00	5.07	8.37	0.00	10.11	4.62	0.00	3.64	2.05	4.91	0.00	0.00	3.52	6.31	0.00	10.56	0.00
9	ER1b	ExonRegion	0	10.97	5.80	3.92	24.45	8.38	8.86	21.78	9.48	4.37	8.10	5.52	9.53	3.53	11.54	17.97	11.82	26.81	8.22	6.67	5.90	10.80	6.72	7.19	4.40	11.92	4.74	7.81	17.05	6.33
10	E1_Ac	KnownBoundary	0	10.68	0.00	15.05	16.39	11.79	1.96	15.45	6.92	1.49	9.59	0.00	1.51	14.94	14.05	9.97	13.08	25.28	9.25	8.09	4.13	5.01	8.36	0.00	5.68	6.78	5.19	13.02	10.42	0.00
11	ER1c	ExonRegion	0	13.31	5.06	19.54	71.30	37.26	1.58	12.60	10.13	0.75	7.61	2.06	8.27	9.99	11.53	7.82	10.02	19.60	2.79	10.18	3.34	8.14	6.27	0.00	3.94	18.02	5.96	15.80	13.58	5.98
12	E1_Da	KnownBoundary	0	0.00	0.00	6.58	19.84	0.00	1.69	2.40	2.49	0.00	5.51	1.58	1.20	0.00	2.26	0.00	0.00	5.56	0.00	0.00	0.00	0.00	4.33	0.00	3.05	3.30	0.00	2.24	0.00	1.42
13	E1a_E1e	NovelJunction	0	0.00	0.00	8.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	2.35	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1a_E1f	KnownJunction	0	3.01	0.00	8.17	69.88	0.00	3.38	2.29	0.00	2.68	2.04	1.23	5.21	0.00	3.97	8.37	6.58	2.23	0.00	0.00	11.41	7.18	2.29	0.00	5.98	6.78	1.80	0.00	9.21	6.37
15	E1_Ae	KnownBoundary	0	2.48	0.00	2.99	29.55	7.37	5.18	0.00	5.08	0.00	1.92	0.00	2.38	3.12	3.06	0.00	3.44	3.13	4.62	0.00	6.86	1.97	2.19	2.41	2.39	0.00	0.00	0.00	0.00	0.00
16	ER1d	ExonRegion	0	13.26	3.16	20.32	91.81	23.80	5.91	8.73	10.23	1.08	8.66	5.95	8.52	4.33	9.17	12.45	8.25	12.09	3.94	4.53	8.54	6.08	7.75	1.27	6.29	13.39	4.19	2.51	13.64	7.41
17	ER1e	ExonRegion	0	8.57	0.00	10.10	43.88	14.94	6.87	2.02	7.36	0.00	7.22	1.19	4.95	3.90	6.35	11.20	2.53	8.01	5.46	4.53	5.62	1.43	5.41	1.81	4.30	2.86	1.57	1.83	3.26	1.34
18	ER1f	ExonRegion	0	7.14	0.00	10.10	43.88	13.28	6.87	2.69	6.75	0.00	7.22	1.19	4.95	3.90	6.35	11.20	2.53	9.35	5.46	4.53	5.62	1.43	5.41	1.81	4.30	2.86	1.57	1.83	3.26	1.34
19	ER1g	ExonRegion	0	6.65	0.64	4.69	24.28	9.15	2.31	4.31	2.83	0.65	4.25	0.32	2.42	5.70	5.11	6.28	2.73	9.36	7.15	3.45	3.09	1.80	5.02	0.96	3.82	4.96	2.17	3.73	2.04	1.66
20	E1_Af	KnownBoundary	0	16.57	0.00	0.00	35.80	6.34	3.38	7.44	7.02	1.89	4.07	0.00	3.89	9.08	1.95	7.57	16.83	8.49	18.88	7.87	0.00	2.05	0.00	0.00	4.90	3.67	3.43	2.34	3.59	0.00
21	ER1h	ExonRegion	0	8.49	2.78	11.59	56.74	14.08	5.84	15.13	4.07	3.00	9.95	4.56	4.09	6.32	6.46	12.40	9.40	16.07	8.44	6.21	6.25	4.99	4.74	1.63	5.70	8.85	5.02	10.15	17.53	6.02
22	E1_Dc	NovelBoundary	0	10.79	0.00	5.73	71.83	27.12	7.40	16.54	5.08	6.03	3.95	0.00	12.65	0.00	11.68	8.37	14.00	6.19	9.25	8.09	10.42	17.85	6.95	0.00	13.64	7.43	2.02	1.84	12.45	9.38
23	E1c_E2a	KnownJunction	1	2.95	0.00	5.41	9.06	6.78	7.64	4.98	0.00	0.00	2.00	8.92	1.54	1.21	8.88	17.14	2.83	5.31	4.62	0.00	0.00	8.18	0.00	0.00	2.93	5.53	0.00	6.46	23.27	0.00
24	E1c_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	I1	Intron	0	2.97	0.00	4.17	19.87	5.41	3.05	4.47	3.58	0.00	1.20	0.99	0.34	0.54	2.52	8.64	3.44	2.07	2.67	7.08	5.36	2.77	2.00	0.00	4.77	4.75	1.31	8.17	5.87	3.33
26	I1_AR1	ActiveIntronRegion	0	1.90	0.00	6.67	15.90	2.17	3.66	4.45	3.27	0.00	0.64	0.53	0.00	0.86	2.00	4.48	2.20	3.31	3.42	2.83	2.44	1.90	1.60	0.00	3.82	3.79	0.00	1.62	3.61	4.74
27	I1_SR1	SilentIntronRegion	0	4.97	0.00	0.00	27.70	11.32	2.12	4.67	4.30	0.00	2.23	1.84	0.96	0.00	3.53	16.29	5.75	0.00	1.49	14.81	10.69	4.41	2.79	0.00	6.65	6.63	3.64	19.95	10.08	1.04
28	E2_Aa	NovelBoundary	0	11.09	4.65	4.14	122.30	20.63	12.28	25.17	7.32	5.21	8.11	3.16	10.45	0.00	8.26	9.37	14.84	26.76	9.63	24.28	11.58	12.03	4.57	2.36	14.59	8.79	4.21	5.07	10.47	19.35
29	ER2a	ExonRegion	1	3.37	9.79	0.67	4.24	2.61	4.61	4.23	0.49	7.81	8.57	12.84	5.00	1.71	4.96	12.05	5.03	3.35	4.25	6.36	5.12	11.21	0.45	2.47	6.70	7.97	4.49	5.93	21.60	2.83
30	E2_Da	NovelBoundary	0	127.88	159.10	126.79	176.00	192.76	75.35	78.78	95.95	271.03	140.29	53.34	153.31	121.33	115.21	178.79	80.32	220.12	0.00	0.00	42.84	180.62	80.12	88.21	121.31	97.59	62.83	55.26	77.64	162.03
31	I2	Intron	0	18.88	79.24	29.89	47.98	62.48	71.63	26.64	38.32	148.55	66.26	82.68	70.66	34.54	78.51	115.03	74.04	79.38	40.48	135.14	62.20	63.28	38.13	51.32	138.63	63.18	41.81	75.93	125.20	116.23
32	I2_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	19.10	0.00	0.00	0.00	0.00	0.00	0.00	20.25	0.00	16.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.40
33	I2_SR1	SilentIntronRegion	0	3.71	6.20	2.90	0.00	6.58	5.82	1.94	4.61	17.29	5.28	10.53	3.44	2.25	4.70	5.66	12.82	3.73	5.38	10.45	4.77	8.24	3.12	5.22	14.08	3.85	4.23	8.11	8.47	14.12
34	I2_AR5	ActiveIntronRegion	0	21.52	91.91	34.58	56.31	72.18	83.05	30.93	44.17	171.33	76.84	95.21	82.32	40.15	91.32	134.00	84.67	92.51	46.56	156.79	72.17	72.84	44.21	59.32	160.26	73.47	48.33	87.71	145.47	133.95
35	E3_Aa	NovelBoundary	1	88.07	220.47	192.52	156.59	204.26	117.67	39.88	231.11	262.47	185.63	282.21	322.70	219.28	342.32	293.00	161.64	349.05	154.50	210.40	92.54	131.24	174.88	208.38	187.10	231.25	297.48	273.39	435.25	382.59
36	ER3a	ExonRegion	0	0.00	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.03	0.04	0.00	0.00	0.02	0.00	0.05	0.00	0.02	0.05	0.00	0.00	0.01	0.00	0.00	0.00	0.03	0.04	0.00	0.00	0.04
37	E3_Da	NovelBoundary	1	76.62	212.42	353.92	173.42	285.61	126.31	75.29	249.03	280.19	217.66	331.53	341.62	246.06	301.46	376.51	222.38	394.61	192.52	242.77	120.24	185.07	241.38	235.96	264.92	252.50	333.61	250.62	537.87	458.19
38	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E4_Aa	NovelBoundary	1	41.35	185.95	173.63	116.69	194.09	177.57	96.29	196.08	214.51	214.95	379.96	195.30	128.36	207.85	176.20	175.03	237.34	168.24	202.31	122.81	285.87	169.14	177.69	200.44	192.00	219.12	316.37	372.39	247.34
40	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.38	0.00	0.00	0.29	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.94
41	ER4b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00