Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BCL9	Gene	0	16.11	41.12	61.49	16.35	68.36	31.21	6.07	20.44	20.40	50.25	49.47	33.80	29.36	36.78	8.61	22.77	25.92	43.34	18.63	5.01	98.25	20.03	61.78	23.36	33.67	25.08	34.90	25.63	33.95
2	234739	Transcript	0	15.35	31.69	61.16	16.68	65.85	31.93	7.74	17.13	16.54	48.86	47.27	35.52	30.39	37.50	7.62	19.76	27.85	38.64	20.94	8.50	99.16	18.13	58.43	18.48	28.01	21.45	33.03	23.89	31.76
3	497938	Transcript	0	0.00	13.92	2.26	0.00	17.23	4.69	0.04	8.03	0.03	7.19	6.32	4.20	1.47	6.68	0.00	4.28	1.52	3.49	0.00	0.46	13.87	1.39	5.32	0.00	3.13	4.14	1.22	0.32	1.60
4	473292	Transcript	0	2.42	20.55	13.65	8.41	0.00	1.61	5.15	16.77	3.35	13.10	22.02	8.67	7.64	10.48	0.00	6.96	2.48	0.00	0.00	0.00	14.72	4.28	14.13	0.00	8.98	1.80	1.74	10.11	8.35
5	ER1a	ExonRegion	0	0.00	1.31	0.32	1.39	12.14	1.52	0.00	0.99	0.22	7.22	1.74	0.00	0.25	0.81	0.00	1.28	2.61	3.90	0.00	0.00	0.62	1.65	2.19	0.58	0.61	2.62	1.07	0.95	0.88
6	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	5.89	3.53	0.00	7.61	0.00	2.04	2.72	0.00	1.56	1.13	0.00	9.64	0.00	4.62	0.00	0.00	0.00	4.96	1.87	3.05	1.44	3.99	0.00	0.00	1.62
7	I1_AR9	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68	0.00
8	E2_Aa	NovelBoundary	0	0.00	4.17	0.00	19.63	12.67	0.00	2.63	2.39	0.00	0.00	0.00	0.00	0.00	0.86	0.00	3.82	0.00	0.00	0.00	0.00	13.16	0.00	0.00	0.00	0.00	0.00	0.00	4.09	0.00
9	ER2a	ExonRegion	0	0.00	2.64	1.90	0.00	4.98	2.62	0.09	3.62	0.06	5.39	2.32	2.58	1.32	2.10	0.00	2.37	0.83	2.36	0.00	0.91	5.36	0.30	5.77	0.00	0.85	2.91	0.25	0.63	0.26
10	E2a_E3a	KnownJunction	0	0.00	25.21	2.62	0.00	29.47	6.75	0.00	12.44	0.00	8.99	10.31	5.81	1.62	11.26	0.00	6.20	2.21	4.62	0.00	0.00	22.38	2.48	4.88	0.00	5.42	5.36	2.19	0.00	2.94
11	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	4.62	0.00	0.00	0.00	2.24	0.00	2.87	0.00	0.00	0.00	0.00	0.00
12	ER3a	ExonRegion	0	4.13	26.43	7.98	8.13	14.69	22.88	5.94	13.50	3.21	35.55	41.67	18.49	8.33	21.70	0.00	16.78	13.79	23.07	1.68	0.73	43.58	9.21	28.70	11.11	15.82	16.81	14.72	14.44	10.62
13	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	2.21	0.00	2.06	0.00	0.00	0.00
14	E3a_E4a	KnownJunction	0	0.00	28.31	14.23	0.00	39.35	25.25	2.12	23.74	1.52	33.99	30.31	18.19	9.52	29.05	0.00	23.41	16.66	23.12	8.09	3.23	58.28	11.33	38.12	5.38	31.82	8.88	12.67	12.09	9.74
15	ER4a	ExonRegion	0	6.61	22.36	33.50	17.62	28.51	20.57	2.55	16.37	3.07	29.54	42.11	22.41	6.39	31.28	0.00	24.82	19.15	32.06	10.96	5.59	49.01	17.22	37.67	10.76	17.34	11.95	12.91	15.16	13.50
16	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.18	4.38	0.00	0.00	0.00
17	E4a_E5a	KnownJunction	0	16.16	34.71	38.32	0.00	69.41	21.10	0.00	14.38	4.54	28.28	38.02	28.46	7.74	33.66	0.00	28.30	10.11	47.65	0.00	4.13	48.89	26.50	26.30	21.95	14.24	8.07	18.09	10.47	11.36
18	E4a_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E5_Aa	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	2.51	2.69	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	19.53	29.66	37.71	7.72	82.06	31.46	3.75	18.46	5.56	37.90	61.89	28.72	17.00	32.83	0.00	30.58	14.61	34.27	0.38	3.12	79.40	22.48	35.01	20.14	22.99	22.61	29.20	18.56	18.31
21	E5_Ab	KnownBoundary	0	15.87	30.44	40.64	20.49	59.24	31.81	5.84	18.51	6.76	47.38	68.58	32.14	20.64	31.26	0.00	29.15	18.46	52.53	0.00	0.00	99.03	20.57	41.02	22.43	23.87	30.17	33.15	16.49	18.32
22	ER5b	ExonRegion	0	19.96	22.95	36.68	13.99	29.89	32.22	5.17	20.18	4.97	41.56	56.13	32.16	14.66	37.29	3.64	24.67	20.13	51.44	22.57	2.53	75.46	26.25	64.98	11.16	28.64	18.07	30.04	28.55	24.33
23	E5_Da	KnownBoundary	0	19.11	26.27	42.58	8.63	38.46	40.29	12.93	21.60	3.41	55.08	42.39	40.69	16.15	37.82	8.17	17.06	22.22	79.88	48.55	0.00	86.20	23.09	94.95	19.44	39.06	34.50	49.50	54.10	30.67
24	ER5c	ExonRegion	0	17.80	34.93	49.10	20.52	59.02	27.85	5.33	27.48	7.23	41.23	49.70	37.19	21.12	52.16	3.40	24.40	27.57	50.48	17.04	3.91	80.78	22.07	74.08	9.18	32.56	18.80	20.06	29.94	27.62
25	E5_Db	NovelBoundary	0	0.00	0.00	2.59	8.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.95	4.62	0.00	0.00	0.00	0.00	1.97	0.00	1.86	0.00	0.00	0.00	0.00
26	E5b_E6a	KnownJunction	0	11.97	79.60	60.84	8.63	107.88	34.80	5.03	25.23	2.80	63.23	76.68	50.12	30.12	55.26	7.57	24.17	31.65	41.48	32.37	2.98	78.82	23.14	92.29	5.32	50.05	21.84	18.49	27.00	27.90
27	I5_AR1	ActiveIntronRegion	0	0.34	0.00	0.65	0.00	0.00	1.73	1.41	0.00	0.97	3.49	3.24	0.00	0.00	0.85	0.11	0.35	0.00	1.15	0.00	0.00	0.66	0.00	0.00	0.00	0.00	0.28	0.00	0.00	1.07
28	I5_AR2	ActiveIntronRegion	0	0.00	0.00	1.64	0.00	0.00	0.88	0.36	1.13	0.77	0.37	1.16	0.00	0.00	0.03	2.70	0.00	0.00	1.64	0.00	0.00	0.46	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00
29	E6_Aa	NovelBoundary	0	5.78	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER6a	ExonRegion	0	21.32	32.47	80.07	36.72	93.08	26.21	7.11	31.76	8.10	55.20	56.55	35.36	23.98	59.85	2.30	31.30	31.89	60.24	16.86	2.25	80.81	22.37	91.67	10.17	30.36	16.69	22.98	33.94	18.52
31	E6_Da	KnownBoundary	0	31.03	8.24	61.24	10.78	105.08	22.60	5.84	39.17	15.04	50.01	30.84	23.07	17.36	49.39	0.00	23.79	28.52	79.37	16.18	3.31	89.85	17.65	92.88	8.25	18.15	19.10	25.89	24.35	13.96
32	E6a_E7a	KnownJunction	0	2.42	20.55	13.65	8.41	0.00	1.61	5.15	16.77	3.35	13.10	22.02	8.67	7.64	10.48	0.00	6.96	2.48	0.00	0.00	0.00	14.72	4.28	14.13	0.00	8.98	1.80	1.74	10.11	8.35
33	ER6b	ExonRegion	0	20.78	22.46	51.83	15.91	67.12	26.68	4.34	14.63	7.94	50.00	47.31	34.86	28.80	49.52	3.18	28.81	24.28	49.92	16.98	2.82	91.71	27.44	76.63	8.24	26.02	22.38	18.03	16.33	29.83
34	E6_Db	NovelBoundary	0	0.00	3.49	0.00	0.00	0.00	0.00	2.92	0.00	1.89	0.00	5.60	0.00	0.00	1.00	8.37	0.00	1.26	9.25	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E6b_E7a	KnownJunction	0	7.90	19.39	79.68	48.32	112.89	37.10	2.92	4.73	9.78	52.09	42.58	27.98	25.60	39.13	0.00	24.63	25.84	29.28	8.09	3.72	94.82	30.14	87.91	10.47	32.51	10.69	24.95	13.39	44.57
36	E7_Aa	NovelBoundary	0	0.00	4.75	0.00	0.00	14.59	1.96	2.92	0.00	0.00	0.00	0.00	0.00	1.34	2.26	0.00	0.00	6.12	9.25	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
37	ER7a	ExonRegion	0	22.36	76.66	83.42	18.97	108.55	43.16	9.20	24.18	15.69	73.09	68.98	60.14	48.77	63.26	6.66	36.72	41.73	69.41	28.16	7.63	109.97	29.47	104.94	19.02	40.36	43.24	35.79	34.31	65.77
38	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	6.73	0.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E7a_E8a	KnownJunction	0	16.04	86.19	36.53	19.20	87.10	39.71	10.01	18.41	15.32	63.59	64.03	78.91	47.96	62.57	24.12	57.22	23.50	98.38	32.37	17.20	96.31	21.20	102.09	20.40	38.19	22.44	32.65	33.61	45.76
40	E8_Aa	NovelBoundary	0	2.30	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER8a	ExonRegion	0	25.53	70.92	63.77	28.96	72.33	34.68	7.08	28.50	12.84	64.13	68.41	46.96	28.51	57.80	5.49	38.69	34.68	55.59	31.36	11.44	116.69	26.73	90.23	20.69	43.81	28.81	21.80	28.12	38.08
42	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E8a_E9a	KnownJunction	0	28.78	47.99	102.15	8.84	100.51	44.24	2.80	24.93	15.87	75.34	45.81	38.34	27.90	58.27	8.77	30.75	44.03	41.61	56.42	12.07	103.16	29.66	100.91	19.44	31.82	28.02	43.93	27.54	31.49
44	ER9a	ExonRegion	0	20.89	36.81	77.99	16.67	71.31	39.57	7.22	23.93	13.38	60.84	57.13	38.33	28.91	43.09	6.81	30.75	29.55	54.10	17.19	6.30	115.75	25.85	75.50	19.26	37.01	32.30	36.25	30.82	31.66
45	E9_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.08	3.91	6.23	1.72	0.00	3.61	0.00	0.00	1.15	0.00	0.00	10.17	0.00	0.00	2.02	2.45	3.86	0.00	2.53	0.00	1.68
46	E9a_E10a	KnownJunction	0	16.04	29.47	72.45	0.00	44.95	23.98	12.47	21.50	19.86	65.67	45.02	64.13	40.00	42.72	24.72	19.74	45.33	70.51	40.46	21.83	98.51	18.67	50.33	18.90	11.55	30.90	13.07	35.50	41.60
47	I9	Intron	0	1.27	0.20	1.13	0.30	1.44	0.70	0.17	0.86	0.09	1.34	0.35	0.10	0.66	0.73	0.39	0.52	1.64	1.15	0.27	0.00	2.05	0.23	0.61	0.54	1.09	0.07	0.93	0.62	0.65
48	I9_AR1	ActiveIntronRegion	0	1.44	0.78	2.25	1.21	0.00	0.60	0.00	0.62	0.00	3.29	1.00	0.42	2.62	0.99	1.55	0.84	1.84	1.22	0.00	0.00	2.11	0.61	1.52	2.17	2.52	0.26	2.47	2.06	0.68
49	E10_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	7.07	1.84	0.00	1.94	0.00	2.04	0.00	1.75	0.00	0.00	0.00	3.75	0.00	4.62	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00
50	ER10a	ExonRegion	0	20.68	49.31	97.64	21.91	95.87	50.22	11.32	33.89	30.14	70.10	83.13	64.01	58.50	53.42	19.57	26.04	46.09	55.28	22.87	11.26	167.07	22.61	83.23	30.75	47.11	39.54	52.90	43.41	60.44
51	E10_Da	NovelBoundary	0	2.60	0.00	1.42	0.00	0.00	1.96	0.00	0.00	0.00	1.68	11.45	0.00	3.50	1.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	1.87	5.32	1.52	0.00	2.14	0.00	3.33
52	E10a_E11a	KnownJunction	0	25.42	58.36	72.68	36.88	73.24	65.61	30.78	20.80	33.07	59.64	102.75	57.44	58.82	57.12	0.00	10.25	37.01	41.61	24.28	22.82	222.53	4.33	54.47	38.58	55.50	22.83	96.71	47.63	35.19
53	I10	Intron	0	2.03	3.97	1.26	1.13	13.91	1.58	0.64	0.44	2.02	2.40	3.91	1.39	2.25	1.74	2.62	0.49	2.30	2.46	1.77	0.22	6.54	0.64	1.72	4.17	1.36	0.68	3.33	0.84	5.50
54	I10_AR1	ActiveIntronRegion	0	2.52	6.08	3.04	1.69	26.11	2.00	0.00	0.00	1.69	1.40	7.52	0.95	2.20	2.59	2.28	0.00	1.60	3.88	0.75	0.00	8.51	1.25	2.82	4.30	0.85	0.49	10.38	1.06	5.95
55	I10_SR1	SilentIntronRegion	0	2.13	3.20	0.95	0.98	15.21	1.21	1.11	0.51	2.74	3.26	4.16	1.92	3.27	2.14	1.99	0.52	2.86	2.88	2.41	0.37	7.41	0.50	2.16	4.50	2.11	0.92	2.01	1.15	7.58
56	I10_AR2	ActiveIntronRegion	0	1.50	4.37	0.78	1.11	3.04	2.14	0.00	0.57	0.61	1.12	0.99	0.50	0.00	0.28	4.27	0.73	1.53	0.60	0.99	0.00	3.33	0.56	0.00	3.34	0.00	0.28	1.71	0.00	0.52
57	E11_Aa	NovelBoundary	0	2.65	14.54	0.97	0.00	0.00	2.95	0.00	0.00	1.89	0.00	2.85	0.00	0.00	1.04	0.00	0.00	3.62	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.50
58	ER11a	ExonRegion	0	12.99	51.78	56.83	16.84	74.61	26.84	5.52	18.29	35.18	45.70	44.49	30.12	33.60	29.76	13.13	15.72	23.80	35.60	23.12	4.16	97.46	15.95	51.20	35.50	36.54	21.19	43.40	23.38	40.27
59	IG21_AR1	ActiveIntergenicRegion	0	0.00	1.01	0.19	1.65	3.51	0.43	0.00	0.54	1.26	2.16	0.27	0.81	0.30	1.74	4.81	0.22	7.75	0.52	3.30	0.00	3.10	0.00	0.11	1.86	0.85	0.00	0.00	0.00	2.84
60	IG21_SR2	SilentIntergenicRegion	0	0.67	0.00	1.92	0.00	15.06	0.43	0.00	4.34	4.24	0.58	0.00	0.80	0.61	2.20	9.83	0.67	10.80	1.46	0.00	0.00	0.67	0.00	2.49	3.59	1.33	0.00	0.00	0.00	4.27
61	IG21_SR3	SilentIntergenicRegion	0	1.31	0.75	0.35	3.34	2.96	0.32	0.00	3.27	1.75	0.44	0.00	1.20	1.51	0.55	8.67	1.09	7.22	1.48	1.34	0.00	2.18	0.00	1.51	0.66	0.67	0.00	0.00	0.00	2.76
62	IG21_AR2	ActiveIntergenicRegion	0	1.08	0.46	0.83	4.11	5.58	0.67	0.58	2.72	3.09	1.06	0.26	2.41	1.12	1.86	6.10	0.29	3.89	0.49	0.94	0.00	2.15	0.13	1.89	2.11	1.03	0.56	0.00	0.00	2.74
63	IG21_SR4	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.04	0.00	0.00	0.50	0.00	0.00	0.00	1.98	1.53	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	IG21_AR4	ActiveIntergenicRegion	0	2.00	0.43	0.04	0.00	5.02	1.04	0.82	0.50	0.15	0.00	0.00	0.50	0.00	0.81	0.00	1.67	3.86	0.26	0.43	0.36	3.86	0.00	0.00	0.14	0.19	0.00	0.00	0.00	0.28
65	IG21_AR7	ActiveIntergenicRegion	0	1.24	0.34	0.73	0.00	5.66	1.39	0.29	2.40	1.87	1.67	0.00	0.98	0.28	2.23	0.67	1.44	5.62	2.51	0.46	3.43	3.31	0.00	0.26	2.81	0.41	0.46	0.00	0.47	2.23
66	IG21_SR9	SilentIntergenicRegion	0	0.82	0.00	1.28	0.00	17.79	0.53	0.39	0.00	0.65	3.04	1.60	0.47	0.00	1.22	1.77	0.82	4.58	2.34	3.06	1.29	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.31	0.38