Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C1orf103	Gene	0	69.93	110.59	40.40	115.99	99.72	135.29	70.57	73.06	83.35	89.84	57.75	62.08	74.84	107.20	181.39	142.48	114.05	105.52	169.30	135.13	96.22	50.88	73.16	88.22	112.04	70.43	204.58	66.47	87.46
2	485275	Transcript	0	7.60	4.03	4.03	23.93	6.79	3.87	11.36	2.85	1.02	14.11	1.03	1.57	1.12	5.90	5.86	16.91	9.38	9.18	0.82	5.24	1.36	9.34	6.90	1.96	5.91	17.50	2.75	20.15	12.57
3	324843	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	443367	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	369763	Transcript	0	0.00	3.28	0.00	7.31	0.00	2.75	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	11.20	2.53	4.01	0.00	4.53	0.00	0.00	0.00	1.81	2.15	1.43	0.00	0.00	0.00	0.00
6	494675	Transcript	0	2.00	0.68	0.74	0.02	1.86	2.33	1.79	0.49	0.72	2.68	0.83	1.53	0.27	2.68	6.85	4.05	3.55	1.96	4.25	1.08	0.79	0.13	0.61	1.70	0.49	0.53	6.37	0.30	0.24
7	IG13_AR1	ActiveIntergenicRegion	0	4.95	0.51	3.60	4.00	1.56	4.11	2.89	2.20	0.72	1.27	0.66	2.21	2.84	2.42	5.72	6.13	3.69	7.62	1.27	1.54	0.11	3.16	0.86	0.77	2.62	4.01	6.71	1.69	2.84
8	ER1a	ExonRegion	0	7.60	4.03	4.03	23.93	6.79	3.87	11.36	2.85	1.02	14.11	1.03	1.57	1.12	5.90	5.86	16.91	9.38	9.18	0.82	5.24	1.36	9.34	6.90	1.96	5.91	17.50	2.75	20.15	12.57
9	ER1b	ExonRegion	0	142.76	50.32	58.21	119.81	67.92	142.04	98.00	252.38	69.93	86.10	43.43	48.46	63.60	102.16	92.38	180.07	97.17	122.17	96.33	133.13	88.48	216.78	100.95	55.06	133.96	187.10	93.07	100.95	96.13
10	E1_Da	NovelBoundary	0	7.79	0.00	4.96	0.00	6.04	0.00	5.72	5.08	0.00	0.00	0.00	4.19	0.00	5.65	7.77	0.00	13.51	19.26	0.00	0.00	3.81	4.28	4.48	0.00	7.54	3.95	6.76	20.35	1.91
11	E1a_E2b	KnownJunction	1	45.54	24.82	34.18	9.92	49.52	32.61	26.55	56.19	10.45	74.42	31.86	32.59	25.86	116.08	38.27	40.47	85.04	61.52	40.46	73.35	43.44	40.94	105.64	28.11	48.76	84.71	133.54	87.30	69.23
12	E1a_E3a	KnownJunction	0	54.03	17.74	27.16	85.85	13.26	72.82	84.68	55.19	31.76	53.69	46.85	40.30	57.16	65.85	118.00	35.65	68.29	14.64	32.37	61.11	15.24	30.87	40.88	45.94	18.30	36.18	158.19	44.89	40.11
13	I1_AR1	ActiveIntronRegion	0	7.83	3.47	5.10	9.22	2.32	3.97	2.91	1.18	2.99	3.47	0.00	1.94	2.59	2.22	11.80	8.36	5.92	7.96	0.41	2.97	0.23	2.89	1.16	0.00	1.60	6.05	4.99	1.72	4.82
14	I1_AR2	ActiveIntronRegion	0	1.50	3.60	0.00	0.00	0.57	4.98	0.10	0.21	2.56	0.39	0.56	1.01	0.45	0.69	0.54	1.29	2.74	1.87	3.73	1.34	1.27	0.00	0.21	0.75	0.33	0.00	1.71	0.00	0.47
15	I1_AR3	ActiveIntronRegion	0	2.22	4.43	0.14	0.00	0.00	2.09	0.64	2.04	2.22	1.84	1.69	0.73	0.31	0.53	4.36	2.60	3.00	0.45	3.77	0.49	1.78	0.00	0.85	0.51	1.35	0.00	1.73	0.00	0.00
16	I1_SR2	SilentIntronRegion	0	2.16	2.41	0.26	0.68	1.27	3.13	0.63	0.27	1.85	1.81	0.62	1.79	0.47	1.45	2.21	3.98	5.87	2.07	2.79	1.81	2.73	0.09	0.51	1.27	1.31	0.89	1.30	0.65	0.43
17	E2_Aa	NovelBoundary	0	5.37	0.00	0.00	0.00	0.00	5.64	0.00	0.00	6.40	1.48	0.00	1.81	1.91	0.89	15.15	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	1.89	0.00	0.00	2.07	0.00
18	ER2a	ExonRegion	0	4.00	1.36	0.28	0.05	3.73	1.56	0.95	0.98	1.44	3.45	1.66	0.65	0.55	2.41	4.72	8.09	3.25	3.92	0.40	2.16	1.58	0.27	1.22	0.89	0.98	1.07	3.34	0.60	0.47
19	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.50	0.00	0.00	0.00	2.96	2.72	0.00	2.93	1.77	9.37	0.00	7.81	0.00	0.00	3.39	1.89	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00
20	ER2b	ExonRegion	1	24.56	13.34	39.50	56.67	40.17	15.36	14.35	25.85	4.40	26.25	13.54	15.30	11.26	41.38	13.97	33.41	37.52	30.91	28.13	33.19	18.43	15.36	37.31	10.69	28.32	25.90	45.27	31.13	23.58
21	E2_Da	KnownBoundary	0	2.83	0.00	30.99	114.75	65.73	0.00	0.00	0.00	2.80	0.00	4.78	1.36	0.00	7.00	7.57	0.00	4.41	0.00	0.00	0.00	4.01	0.00	2.41	5.38	3.67	0.00	2.44	6.02	4.09
22	E2a_E3a	KnownJunction	0	0.00	0.00	1.20	0.00	0.00	3.11	2.63	0.00	0.00	1.92	0.00	2.41	0.00	2.95	8.97	0.00	3.85	0.00	8.09	0.00	0.00	0.00	0.00	2.51	0.00	0.00	9.39	0.00	0.00
23	ER2c	ExonRegion	1	75.06	100.97	51.69	73.83	107.55	102.56	32.07	59.50	47.66	92.39	48.32	55.29	58.30	115.40	64.88	135.81	119.40	101.62	141.86	105.13	97.83	37.23	83.13	69.16	122.62	69.89	178.89	76.69	86.44
24	E2_Db	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	3.68	0.00	2.44	1.55	0.00	0.00	1.14	0.00	1.13	0.00	3.06	3.53	4.62	16.18	0.00	2.05	0.00	4.14	9.03	1.70	0.00	0.00	6.25	0.00
25	E2b_E3a	KnownJunction	1	78.27	80.57	43.53	58.24	84.15	105.01	33.36	33.29	62.91	60.68	29.45	41.20	68.47	115.81	106.04	72.83	91.46	85.41	121.39	61.36	52.54	22.17	57.62	67.41	87.51	54.37	165.99	57.83	47.97
26	Ix	Intron	0	1.44	5.99	0.24	1.03	0.47	4.02	1.54	0.53	5.31	2.42	1.20	2.57	1.33	2.98	4.89	5.64	4.29	3.66	3.06	1.32	1.71	0.52	0.43	1.55	1.78	0.98	1.75	0.23	0.93
27	Ix_SR1	SilentIntronRegion	0	1.44	6.01	0.24	1.03	0.47	4.03	1.55	0.53	5.33	2.43	1.20	2.57	1.34	2.99	4.90	5.65	4.30	3.67	3.07	1.32	1.71	0.52	0.43	1.55	1.78	0.98	1.76	0.23	0.93
28	E3_Aa	NovelBoundary	0	2.89	4.85	0.00	0.00	0.00	9.13	0.00	0.00	7.10	3.99	0.00	4.70	4.11	2.06	8.37	6.20	7.23	4.62	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	1.85
29	ER3a	ExonRegion	0	114.40	196.12	71.52	211.45	162.99	190.68	127.72	100.41	104.27	146.26	114.13	125.61	138.09	182.63	251.06	198.89	195.66	148.17	266.36	214.59	122.74	64.79	117.22	173.02	206.11	86.77	381.45	103.78	126.90
30	E3_Da	NovelBoundary	0	4.78	0.00	1.27	0.00	0.00	3.41	2.92	0.00	0.00	0.00	0.00	1.30	0.00	4.23	0.00	6.58	3.58	5.39	0.00	7.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E3a_E4a	KnownJunction	0	113.96	209.22	36.92	206.63	128.51	284.23	146.58	50.91	179.58	158.82	130.18	97.56	118.81	148.07	335.85	231.87	190.38	192.39	355.84	237.84	164.89	37.68	104.36	177.23	194.16	109.52	401.56	92.69	123.87
32	Ix	Intron	0	2.33	4.21	0.11	0.92	1.25	2.64	0.13	0.00	3.51	1.11	0.53	1.58	0.37	1.93	8.04	3.27	3.63	2.26	4.90	0.53	1.64	0.35	0.23	0.41	0.91	0.90	1.64	0.52	0.64
33	Ix_SR1	SilentIntronRegion	0	2.27	4.01	0.00	1.08	1.48	3.01	0.15	0.00	3.02	1.20	0.63	1.56	0.15	1.55	6.90	3.30	3.60	2.52	5.04	0.45	1.62	0.41	0.27	0.23	1.08	0.89	1.38	0.49	0.56
34	Ix_AR1	ActiveIntronRegion	0	2.71	5.40	0.70	0.00	0.00	0.58	0.00	0.00	6.29	0.61	0.00	1.70	1.63	4.10	14.53	3.14	3.82	0.81	4.15	1.00	1.80	0.00	0.00	1.44	0.00	1.00	3.09	0.69	1.13
35	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	31.49	6.63	5.29	2.86	2.44	5.48	3.71	0.00	3.70	0.00	6.51	9.97	7.19	5.40	4.62	8.09	0.00	0.00	0.00	0.00	2.33	5.49	4.38	0.00	1.89	3.04
36	ER4a	ExonRegion	0	86.50	188.15	44.64	234.57	153.99	236.54	144.00	88.97	163.29	158.06	113.32	112.25	141.53	163.39	326.34	208.54	166.50	158.85	280.86	217.36	161.93	57.00	101.88	176.60	196.66	99.09	424.72	95.56	143.43
37	E4_Da	KnownBoundary	1	64.88	339.81	14.70	179.46	154.15	270.34	140.75	63.70	256.99	110.45	58.78	96.53	106.14	98.62	559.49	207.92	108.52	215.76	364.16	229.24	138.06	32.14	82.15	138.35	131.08	64.29	312.55	37.92	106.01
38	ER4b	ExonRegion	1	34.36	133.92	8.51	122.07	86.64	178.60	92.26	31.29	139.55	65.86	52.91	55.47	82.58	80.33	404.06	146.17	102.84	106.36	232.97	173.90	96.16	16.88	39.10	96.13	51.96	27.82	196.08	29.29	78.65
39	ER4c	ExonRegion	0	0.00	3.28	0.00	7.31	0.00	2.75	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	11.20	2.53	4.01	0.00	4.53	0.00	0.00	0.00	1.81	2.15	1.43	0.00	0.00	0.00	0.00