Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CDKN2C	Gene	0	45.86	26.46	28.78	62.69	112.23	30.17	35.54	56.74	41.59	59.21	27.27	85.60	40.72	94.96	49.80	36.63	21.87	45.32	88.73	689.48	40.74	53.06	95.45	30.75	23.97	32.83	82.88	116.13	27.54
2	262662	Transcript	0	1.69	0.22	0.02	1.11	0.79	0.23	0.21	0.08	0.22	0.81	0.00	0.70	0.22	0.87	1.13	0.54	0.23	1.36	0.78	2.09	0.53	1.44	0.62	0.35	0.24	0.27	1.33	1.55	0.22
3	396148	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	371761	Transcript	0	40.35	10.27	7.61	76.93	111.30	15.46	26.68	21.81	15.50	23.16	20.43	14.15	8.83	56.40	34.47	23.85	8.89	13.86	55.62	789.59	23.93	21.59	54.73	17.20	14.91	10.60	115.17	120.94	11.36
5	ER1a	ExonRegion	0	0.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.10	0.00	0.00	0.00	0.00	0.00	0.13	0.00	0.19	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E3b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	I1_AR1	ActiveIntronRegion	0	0.79	0.23	0.00	1.44	0.00	0.00	0.00	0.19	1.29	0.58	0.00	0.50	0.00	0.96	0.00	0.00	0.24	0.19	0.66	6.32	0.35	0.00	0.00	1.08	0.00	0.32	1.66	0.49	0.27
9	I1_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	1.08	5.28	0.00	2.52	0.00	0.03	8.19	0.00	0.00	3.88	6.27	5.41	4.99	0.00	0.00	0.00	0.00	0.00	10.46	2.98	0.00
10	E2_Aa	NovelBoundary	0	7.61	3.78	0.00	0.00	0.00	1.76	2.69	0.00	0.00	5.95	0.00	1.36	0.00	3.04	0.00	3.82	0.00	0.00	8.09	11.25	0.00	0.00	0.00	0.00	0.00	0.00	6.16	12.45	1.65
11	ER2a	ExonRegion	0	4.85	0.65	0.05	3.34	2.37	0.70	0.62	0.23	0.65	2.32	0.00	2.11	0.67	2.61	3.40	1.50	0.70	3.90	2.35	6.26	1.60	2.76	1.87	1.05	0.71	0.80	3.99	4.64	0.65
12	E2_Ab	KnownBoundary	0	12.62	0.00	1.54	39.04	55.12	3.15	2.75	0.00	5.39	14.38	0.00	6.36	7.07	4.90	19.13	6.58	0.00	18.49	0.00	19.35	3.49	15.80	30.04	2.75	6.59	8.20	7.21	9.80	4.52
13	ER2b	ExonRegion	0	37.64	15.00	27.66	58.00	87.69	24.68	23.26	39.16	28.04	51.29	12.96	73.44	32.60	61.56	19.98	33.94	15.38	50.29	59.29	119.70	33.66	46.39	75.09	18.94	15.32	33.58	37.50	62.62	22.06
14	E2_Da	NovelBoundary	0	23.00	8.24	0.00	0.00	12.97	1.57	2.80	6.57	9.32	17.74	4.37	14.46	4.68	18.06	0.00	2.98	3.83	27.74	24.28	54.58	5.90	6.42	11.57	5.14	9.51	3.99	18.93	31.99	0.00
15	E2a_E3b	KnownJunction	0	39.46	66.22	86.40	79.37	222.53	54.79	42.40	115.41	107.41	138.49	53.84	276.20	95.79	146.70	33.09	73.36	45.47	112.50	169.94	103.87	93.74	81.19	178.19	56.88	35.04	68.06	110.38	137.98	58.04
16	E2a_E4a	NovelJunction	0	0.00	8.34	3.01	0.00	6.19	0.00	0.00	0.00	0.00	0.00	1.17	1.54	0.00	2.26	0.00	0.00	0.00	0.00	0.00	136.29	0.00	2.33	0.00	0.00	0.00	0.00	0.00	4.49	0.00
17	Ix	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.23	11.11	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.34	11.64	2.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3_Aa	NovelBoundary	1	37.22	19.39	0.00	29.77	26.38	17.38	0.00	0.00	11.48	20.25	0.00	4.61	13.41	13.34	0.00	7.04	3.98	9.25	40.46	58.30	13.16	19.11	2.27	5.32	8.64	5.88	3.98	21.07	0.00
20	ER3a	ExonRegion	0	40.35	10.27	7.61	76.93	111.30	15.46	26.68	21.81	15.50	23.16	20.43	14.15	8.83	56.40	34.47	23.85	8.89	13.86	55.62	789.59	23.93	21.59	54.73	17.20	14.91	10.60	115.17	120.94	11.36
21	E3_Ab	KnownBoundary	0	27.72	0.00	11.88	39.69	76.34	8.71	15.16	13.64	9.26	32.72	10.98	15.78	13.63	69.68	7.57	14.00	6.35	18.49	48.55	607.67	9.51	14.83	31.37	26.98	7.16	1.67	93.83	89.19	9.94
22	ER3b	ExonRegion	0	182.89	107.01	143.35	148.78	355.95	136.94	162.59	256.81	167.15	229.24	102.33	381.42	152.65	421.48	214.88	158.96	85.29	159.80	401.63	3790.18	170.75	214.24	386.37	125.39	111.82	133.20	261.57	471.68	114.62
23	E3_Da	NovelBoundary	0	11.56	0.00	2.84	0.00	13.41	1.53	2.46	0.00	6.15	9.63	0.00	1.30	0.00	5.18	8.17	9.49	0.00	0.00	24.28	111.64	6.58	0.00	0.00	0.00	1.93	0.00	0.00	5.98	1.72
24	E3a_E4a	KnownJunction	0	174.77	101.70	136.48	171.04	240.51	115.79	234.47	263.76	233.39	301.75	214.04	469.06	176.64	510.04	243.97	174.88	117.97	142.56	364.16	3127.52	179.77	239.15	563.51	142.06	120.47	179.17	533.20	883.17	149.19
25	Ix	Intron	0	4.82	3.93	0.48	2.51	13.58	7.40	2.05	0.70	4.56	3.31	1.23	2.80	0.94	6.69	5.50	3.14	1.47	3.92	18.21	28.21	5.77	0.63	0.82	1.08	1.02	0.96	5.43	3.72	1.13
26	Ix_SR1	SilentIntronRegion	0	5.17	5.01	1.18	4.34	24.06	11.65	1.92	1.41	2.86	7.76	1.03	3.24	1.75	9.49	3.47	3.65	1.79	5.13	24.57	31.42	8.51	1.87	2.48	1.67	2.10	2.93	17.08	8.91	2.60
27	Ix_AR1	ActiveIntronRegion	0	4.76	3.47	0.60	4.03	14.27	3.82	1.13	0.20	1.66	1.41	1.79	2.64	0.21	5.48	5.29	3.19	0.57	5.09	16.40	23.53	5.53	0.69	1.38	1.01	0.80	0.68	5.14	2.87	0.25
28	Ix_SR2	SilentIntronRegion	0	4.66	4.52	0.07	2.03	12.45	9.15	1.54	0.65	4.57	2.52	1.56	2.87	1.02	5.97	6.09	3.53	1.79	3.50	19.97	32.54	5.88	0.18	0.13	0.79	0.71	0.44	2.46	2.50	0.96
29	Ix_AR2	ActiveIntronRegion	0	4.58	4.09	0.31	1.01	7.38	2.96	5.52	1.04	9.22	2.09	0.00	1.25	1.52	7.03	7.80	3.22	0.29	3.10	12.61	28.88	2.52	0.51	0.00	0.49	0.61	1.03	0.00	0.90	0.77
30	Ix_AR3	ActiveIntronRegion	0	3.98	0.00	1.12	0.00	4.98	1.37	0.00	0.00	16.85	3.30	0.00	2.47	0.00	4.15	22.40	0.00	1.00	2.73	4.53	11.64	1.43	0.00	0.00	0.00	0.00	1.57	0.00	1.63	0.00
31	Ix_SR3	SilentIntronRegion	0	5.28	0.81	0.92	0.90	7.29	3.90	2.28	0.23	6.39	3.31	0.75	3.53	0.00	6.59	4.13	0.94	2.16	2.86	10.52	14.33	4.73	0.45	0.91	1.90	1.26	0.21	4.38	4.20	1.09
32	E4_Aa	NovelBoundary	0	8.14	18.42	0.00	10.78	0.00	5.83	0.00	0.00	2.83	2.04	0.00	3.25	0.00	9.00	0.00	0.00	2.79	0.00	0.00	10.09	0.00	2.09	0.00	0.00	0.00	0.00	0.00	2.07	3.00
33	ER4a	ExonRegion	0	91.56	75.24	58.68	123.76	253.82	66.70	83.73	144.41	111.21	137.33	78.36	202.86	105.81	235.72	141.80	71.37	57.00	88.42	213.73	1928.36	89.72	119.04	222.90	80.86	58.27	67.52	214.18	286.24	65.47
34	E4_Da	KnownBoundary	0	0.00	0.00	0.00	9.49	18.57	0.00	5.49	2.14	14.31	0.00	2.91	2.41	5.51	3.06	0.00	0.00	0.00	0.00	0.00	26.13	1.85	0.00	6.80	0.00	0.00	0.00	6.26	0.00	0.00
35	ER4b	ExonRegion	0	0.00	0.00	0.00	8.19	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91