Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-69E11.2	Gene	0	3.79	4.54	2.04	1.20	5.05	3.67	6.99	9.82	10.80	2.98	0.93	5.60	2.97	9.66	7.43	18.27	33.28	3.68	6.23	1.56	3.50	2.01	2.08	15.21	9.01	2.02	1.19	1.33	1.31
2	440190	Transcript	0	1.79	2.21	0.89	0.86	0.00	1.67	2.59	4.95	3.82	1.63	1.14	2.79	0.47	6.57	2.32	8.71	21.98	2.85	3.05	0.57	0.68	0.43	0.43	5.56	3.74	1.13	0.00	0.39	0.56
3	417869	Transcript	0	0.00	4.36	0.00	0.00	0.00	1.80	3.89	5.72	11.16	1.56	2.97	0.72	2.83	6.53	0.00	3.56	12.00	0.00	0.00	0.00	0.96	7.03	2.46	3.77	2.54	1.09	0.00	0.00	0.78
4	431553	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	2.71	1.76	0.00	0.00	3.22	0.00	0.00	3.82	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	4.38	0.00	0.00	1.32
5	450157	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.68	0.76	0.69	0.00	1.76	1.37	0.00	0.00	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	0.00
6	458207	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	3.07	0.00	0.74	0.53	0.00	0.00	0.00	1.21	0.00	1.19	3.48	1.78	0.00	0.00	0.53	0.89	0.00	0.00	0.25	0.00	0.00	0.00	0.00
7	331856	Transcript	0	3.11	3.57	2.20	1.26	5.14	2.54	5.29	7.07	9.09	2.14	0.34	4.74	2.08	5.18	6.73	14.03	27.55	2.97	3.92	1.01	2.12	0.68	1.34	10.09	8.47	0.61	0.05	1.25	0.63
8	441741	Transcript	0	0.00	4.46	1.49	0.00	0.00	1.57	12.53	2.34	12.42	0.00	0.00	2.68	0.00	1.06	0.00	18.36	7.25	0.00	0.00	4.13	1.85	4.96	2.51	11.48	3.22	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	3.58	4.42	1.78	1.71	0.00	3.34	5.17	9.90	7.65	3.26	2.27	5.57	0.94	13.15	4.63	17.42	43.96	5.69	6.11	1.13	1.37	0.86	0.86	11.12	7.48	2.25	0.00	0.78	1.12
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E1a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	2.83	2.93	0.24	0.00	0.00	5.35	3.74	6.44	8.51	8.15	0.00	6.14	1.86	7.06	11.20	32.81	25.87	5.17	3.88	0.00	1.83	0.00	0.00	8.07	6.94	6.29	0.00	0.00	0.00
13	ER2a	ExonRegion	0	8.34	5.89	0.75	0.98	6.08	13.06	6.02	18.28	14.40	4.01	0.39	9.90	4.93	14.25	12.29	28.83	60.38	5.43	4.91	0.00	2.63	7.52	0.86	7.69	15.44	7.63	2.01	0.00	1.52
14	E2_Ab	KnownBoundary	0	104.40	98.21	203.83	125.75	29.03	104.24	155.68	310.54	121.51	133.38	50.81	148.64	305.29	158.09	59.00	141.68	321.43	14.64	0.00	52.76	50.54	154.85	142.09	95.64	134.91	52.01	63.46	90.00	110.30
15	ER2b	ExonRegion	0	9.81	12.56	3.06	7.13	0.62	10.04	18.90	22.19	17.92	1.59	6.04	8.32	5.98	19.91	9.94	21.07	50.84	9.96	8.49	0.00	4.10	3.70	0.81	8.87	18.83	2.28	0.64	0.61	3.12
16	E2_Da	NovelBoundary	0	5.37	0.00	0.00	0.00	7.37	1.88	2.46	5.08	16.38	0.00	7.21	1.54	4.74	1.15	16.74	6.12	2.52	0.00	0.00	0.00	2.05	4.13	0.00	2.99	3.41	0.00	0.00	0.00	0.00
17	E2a_E4a	KnownJunction	0	7.90	4.85	2.82	0.00	0.00	7.33	20.43	26.77	19.67	3.56	6.33	9.13	1.27	24.04	18.34	32.28	52.36	13.87	8.09	0.00	1.48	2.29	0.00	11.96	21.59	6.31	0.00	2.07	5.45
18	E3_Aa	NovelBoundary	0	149.88	167.63	177.64	179.24	267.48	320.29	153.79	149.35	261.65	299.91	167.13	187.53	177.79	187.29	293.60	156.82	310.00	82.58	79.35	215.93	221.37	177.50	159.77	265.52	185.79	196.59	206.44	263.12	153.05
19	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	4.12	0.00	2.22	1.60	0.00	0.00	0.00	0.58	0.00	0.83	4.08	0.71	0.00	0.00	1.58	0.33	0.00	0.00	0.76	0.00	0.00	0.00	0.00
20	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	5.09	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	2.75	5.18	4.62	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix	Intron	0	2.28	7.25	1.78	2.54	19.89	0.49	0.71	0.98	1.79	6.14	1.05	2.19	3.21	1.52	1.94	2.51	3.97	3.81	1.13	0.49	27.53	0.00	14.41	73.15	4.30	8.35	19.14	5.20	11.25
23	Ix_AR1	ActiveIntronRegion	0	2.57	7.79	1.69	2.87	19.48	0.55	0.81	0.95	2.02	6.11	1.12	2.47	3.31	1.55	2.13	2.77	4.29	4.28	1.28	0.55	29.15	0.00	15.40	77.21	4.39	9.13	19.26	5.24	11.31
24	Ix_SR1	SilentIntronRegion	0	0.00	3.18	2.56	0.00	23.82	0.00	0.00	1.21	0.00	6.54	0.60	0.00	2.52	1.33	0.53	0.55	1.50	0.17	0.00	0.00	15.42	0.00	7.01	43.09	3.75	2.41	18.72	5.04	11.16
25	E4_Aa	NovelBoundary	0	2.65	0.00	0.00	21.57	28.30	1.61	0.00	2.54	1.55	7.31	0.00	0.00	9.30	3.37	0.00	2.91	6.26	0.00	0.00	0.00	31.53	0.00	24.28	114.91	5.34	1.97	13.12	0.00	8.75
26	ER4a	ExonRegion	0	14.34	18.96	3.75	0.00	23.50	13.76	15.45	32.05	19.85	10.80	6.31	11.11	17.68	32.64	20.88	46.80	69.93	12.90	18.84	2.56	31.10	21.55	24.74	121.01	27.20	15.39	22.91	9.59	13.37
27	E4_Da	KnownBoundary	0	8.14	9.60	0.00	0.00	20.19	1.65	8.24	8.91	13.61	12.78	0.00	7.23	9.11	10.81	9.57	26.47	23.05	9.25	0.00	0.00	38.27	4.67	20.19	121.43	17.96	19.18	25.69	12.58	12.78
28	E4a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.08	0.00	0.00	0.00	1.36	1.53	1.37	0.00	0.00	2.75	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00
29	E4a_E5d	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	1.76	8.24	3.98	5.57	0.00	0.00	0.00	0.00	6.05	0.00	2.75	13.37	0.00	8.09	0.00	5.33	0.00	0.00	3.05	0.00	4.38	0.00	0.00	0.00
30	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	11.21	4.98	1.52	0.00	0.00	0.00	0.00	2.06	0.00	3.21	2.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.90
31	E4a_E7a	KnownJunction	0	0.00	8.73	0.00	0.00	0.00	3.61	7.78	11.45	22.32	3.12	5.95	1.45	5.67	13.05	0.00	7.11	23.99	0.00	0.00	0.00	1.93	14.05	4.92	7.54	5.08	2.19	0.00	0.00	1.55
32	ER4b	ExonRegion	0	2.97	6.23	0.00	0.00	9.71	1.87	3.31	3.82	7.58	9.00	0.06	3.68	6.46	5.93	4.74	13.76	8.68	6.09	0.23	0.00	19.38	3.10	12.70	51.85	6.49	10.52	11.93	6.44	6.33
33	E4_Db	NovelBoundary	0	2.42	0.00	1.47	0.00	27.26	1.65	2.80	4.93	4.99	7.51	1.36	3.19	6.43	4.19	0.00	9.33	6.80	4.62	0.00	8.10	35.42	4.62	20.29	104.14	10.00	10.04	31.46	6.52	15.95
34	E4b_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	3.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E4b_E5d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E4b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	2.71	1.76	0.00	0.00	3.22	0.00	0.00	3.82	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	4.38	0.00	0.00	1.32
37	I4	Intron	0	3.60	5.75	2.21	0.86	6.45	1.81	2.42	6.41	7.54	4.16	1.00	3.40	1.16	5.54	4.19	11.33	18.81	7.44	6.90	1.98	26.86	0.22	10.85	27.88	13.04	4.34	15.82	3.53	4.17
38	I4_AR1	ActiveIntronRegion	0	3.79	6.05	2.32	0.91	6.78	1.91	2.54	6.74	7.93	4.37	1.05	3.58	1.23	5.83	4.41	11.90	19.79	7.82	7.26	2.09	28.26	0.23	11.41	29.33	13.71	4.56	16.65	3.71	4.39
39	E5_Aa	NovelBoundary	0	14.69	12.89	16.84	0.00	32.42	3.68	2.52	6.82	14.07	12.18	9.27	1.11	23.66	1.99	7.97	17.21	46.37	13.87	0.00	0.00	27.07	8.75	20.68	57.78	10.30	4.16	6.16	9.39	6.93
40	ER5a	ExonRegion	0	3.64	3.61	2.04	1.74	1.06	2.93	5.82	8.54	10.68	2.31	0.29	5.13	0.66	4.98	8.78	19.07	25.59	4.35	5.06	1.12	3.18	0.88	1.88	9.61	10.94	0.25	0.11	1.32	0.81
41	E5_Ab	KnownBoundary	0	8.49	0.00	4.48	0.00	7.07	3.57	2.92	7.07	16.69	1.96	4.11	5.78	1.34	5.69	0.00	18.13	35.27	13.87	8.09	0.00	4.09	0.00	5.02	17.11	15.50	0.00	2.29	0.00	0.00
42	ER5b	ExonRegion	0	3.03	4.86	2.29	2.02	3.19	4.17	10.44	19.32	16.82	3.06	0.23	9.12	2.18	10.47	5.94	25.13	42.63	2.93	9.78	2.33	3.78	0.51	1.47	12.09	13.06	1.88	1.69	0.78	1.70
43	E5_Ac	KnownBoundary	0	0.00	8.34	0.00	0.00	0.00	1.96	2.92	6.22	19.31	5.31	0.00	14.13	1.40	11.28	0.00	35.50	32.73	9.25	16.18	0.00	0.00	0.00	2.31	7.42	11.67	8.58	0.00	2.11	0.00
44	ER5c	ExonRegion	0	0.05	3.20	1.54	0.00	0.00	1.79	14.11	6.67	15.45	1.41	0.48	7.73	3.41	10.88	0.70	24.67	39.79	2.32	8.94	2.11	0.68	1.04	2.03	12.05	10.15	3.54	0.00	3.26	0.00
45	E5_Da	KnownBoundary	0	0.00	0.00	2.57	0.00	0.00	0.00	5.84	2.54	6.67	2.04	0.00	1.23	3.06	7.18	0.00	3.82	39.30	0.00	0.00	0.00	0.00	0.00	0.00	8.08	3.14	0.00	0.00	4.45	0.00
46	E5a_E5d	KnownJunction	0	0.00	4.46	1.49	0.00	0.00	1.57	12.53	2.34	12.42	0.00	0.00	2.68	0.00	1.06	0.00	18.36	7.25	0.00	0.00	4.13	1.85	4.96	2.51	11.48	3.22	0.00	0.00	0.00	0.00
47	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
48	ER5d	ExonRegion	0	2.57	3.53	2.35	0.78	9.21	2.15	4.75	5.60	7.49	1.97	0.39	4.35	3.51	5.38	4.68	8.99	29.51	1.59	2.78	0.91	1.06	0.49	0.79	10.56	5.99	0.96	0.00	1.17	0.44
49	E5_Ad	KnownBoundary	0	2.54	0.00	2.89	0.00	0.00	0.00	19.40	7.17	4.57	1.72	0.00	5.24	3.57	5.05	0.00	3.67	23.41	4.62	8.09	0.00	2.05	0.00	0.00	9.09	0.00	4.38	0.00	2.29	0.00
50	ER5e	ExonRegion	0	2.67	7.60	4.32	0.00	17.46	4.22	16.81	24.76	22.66	3.91	0.63	8.27	4.25	17.13	15.92	37.53	38.10	6.56	24.87	3.63	4.42	2.71	1.56	22.79	13.60	2.26	0.00	0.42	0.26
51	E5_Db	NovelBoundary	0	2.71	11.92	2.87	0.00	0.00	1.57	2.92	7.22	10.48	0.00	0.00	2.50	3.31	5.81	0.00	7.50	13.35	0.00	0.00	0.00	2.05	0.00	0.00	11.19	9.36	0.00	0.00	4.22	0.00
52	E5b_E6a	KnownJunction	0	5.72	3.88	0.95	0.00	0.00	1.96	5.84	15.03	24.94	0.00	0.00	9.31	1.78	9.37	8.37	38.94	40.94	4.62	16.18	0.00	4.01	2.14	0.00	8.85	7.46	3.69	0.00	0.00	1.25
53	Ix	Intron	0	0.00	1.51	0.00	0.00	0.00	1.29	0.94	3.45	1.05	0.68	0.56	0.00	1.51	2.12	0.00	3.16	6.98	0.00	0.00	6.45	0.00	0.00	0.00	6.04	1.34	0.00	0.00	0.00	0.00
54	Ix_AR1	ActiveIntronRegion	0	0.00	1.54	0.00	0.00	0.00	1.31	0.96	3.51	1.07	0.69	0.57	0.00	1.54	2.16	0.00	3.22	7.10	0.00	0.00	6.54	0.00	0.00	0.00	6.15	1.36	0.00	0.00	0.00	0.00
55	E6_Aa	NovelBoundary	0	0.00	3.97	5.26	0.00	0.00	1.65	4.98	5.08	3.96	0.00	0.00	1.57	2.42	5.78	8.37	3.14	18.35	4.62	0.00	0.00	1.72	0.00	0.00	2.33	5.19	0.00	0.00	0.00	0.00
56	ER6a	ExonRegion	0	4.65	4.90	2.45	0.00	0.37	4.47	13.47	11.67	19.12	3.11	0.04	10.60	3.14	17.10	13.59	43.90	35.50	3.47	18.20	6.20	5.32	1.29	0.68	17.87	8.66	0.14	0.00	1.22	0.43
57	E6_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	1.54	0.00	4.28	0.00	7.42	8.51	0.00	0.00	0.00	0.00	0.00	0.00	2.57	1.93	0.00	0.00	0.00	0.00
58	E6a_E7a	KnownJunction	0	0.00	9.70	0.00	0.00	6.04	12.70	2.92	6.52	19.03	1.88	1.27	7.32	5.41	14.82	7.57	35.95	22.08	5.01	24.28	0.00	3.13	0.00	0.00	5.62	6.25	0.00	0.00	0.00	3.43
59	Ix	Intron	0	1.97	4.07	1.15	0.00	0.56	0.79	1.39	3.60	2.32	0.33	0.00	2.20	0.75	1.46	5.80	3.18	15.60	0.89	0.73	0.95	1.15	0.21	0.42	2.72	2.79	1.81	0.00	2.62	1.61
60	Ix_SR1	SilentIntronRegion	0	2.22	4.67	1.19	0.00	0.64	0.91	1.48	4.12	2.66	0.38	0.00	2.43	0.53	1.67	6.66	3.65	16.75	1.02	0.84	1.09	1.22	0.24	0.48	2.95	3.20	1.62	0.00	2.46	1.85
61	E7_Aa	NovelBoundary	0	0.00	9.70	0.00	0.00	0.00	1.88	0.00	0.00	2.92	0.00	1.61	1.54	0.00	2.15	18.34	10.71	6.96	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	2.19	0.00	0.00	0.00
62	ER7a	ExonRegion	0	4.78	2.89	0.75	1.62	1.98	4.04	7.51	6.16	12.85	3.31	1.08	2.74	3.28	15.58	9.96	14.43	24.52	0.87	4.03	3.38	2.34	4.17	0.75	9.41	5.14	2.00	0.41	0.00	1.06