Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-385F5.2	Gene	0	19.03	6.56	6.04	1.48	3.03	9.51	4.16	12.92	6.07	9.39	4.79	2.67	1.80	9.82	7.88	15.01	6.94	17.70	5.61	2.20	4.42	2.79	3.55	7.99	5.61	14.44	0.57	1.35	5.46
2	433131	Transcript	0	8.89	6.12	5.89	0.69	6.21	5.74	1.94	14.54	3.03	4.47	2.95	1.25	0.84	5.59	3.68	8.55	3.24	8.26	2.85	1.03	2.06	1.30	2.55	4.18	3.83	10.49	0.26	0.63	4.43
3	ER1a	ExonRegion	0	0.05	0.93	2.67	0.00	2.16	3.27	0.00	4.79	0.96	0.46	1.16	0.00	0.00	0.91	0.00	1.35	0.01	0.00	1.16	0.02	0.00	0.00	1.19	2.23	0.53	6.73	0.00	0.00	2.32
4	E1_Da	NovelBoundary	0	0.00	9.31	1.54	0.00	0.00	3.64	0.00	0.00	17.11	5.99	4.49	5.96	1.97	4.32	0.00	7.57	0.00	0.00	0.00	0.00	1.93	4.76	0.00	8.79	9.24	5.84	2.04	4.18	3.10
5	E1a_E2a	KnownJunction	0	0.00	8.63	7.60	0.00	13.12	1.96	0.00	22.64	0.00	0.00	1.46	0.00	0.00	2.48	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	3.33	7.21	0.00	0.00	4.26
6	Ix	Intron	0	4.77	4.75	1.75	0.55	5.58	4.54	1.23	5.00	3.54	7.17	2.70	4.13	1.68	8.92	4.41	9.66	6.25	4.39	13.12	1.98	4.39	2.98	3.26	3.31	3.02	8.91	3.28	8.21	2.15
7	Ix_AR5	ActiveIntronRegion	0	3.96	5.56	0.00	0.00	0.00	0.32	0.00	0.00	0.00	1.11	0.00	0.00	1.60	1.47	0.00	1.95	0.54	2.73	2.09	0.00	2.19	0.00	2.50	2.15	0.88	0.60	1.83	0.00	0.00
8	Ix_SR4	SilentIntronRegion	0	7.25	7.54	1.60	0.00	2.66	5.45	0.70	2.64	5.93	9.73	1.65	2.07	1.67	8.54	1.92	9.78	6.20	5.14	9.61	1.93	2.99	2.30	4.06	2.00	1.92	6.50	3.04	2.47	0.68
9	Ix_AR4	ActiveIntronRegion	0	5.09	2.24	2.69	0.44	2.24	3.43	1.24	4.05	2.14	7.60	1.61	3.68	1.94	8.33	4.02	7.84	6.51	4.61	11.08	1.09	3.48	2.52	2.92	1.85	2.03	7.56	3.14	6.69	2.47
10	Ix_SR3	SilentIntronRegion	0	4.00	0.00	0.71	0.00	0.00	0.60	0.00	1.84	1.12	3.13	0.00	3.83	2.60	3.51	0.00	7.25	4.31	2.64	13.73	2.06	1.47	2.16	0.00	0.22	0.76	0.00	0.67	14.13	0.36
11	Ix_AR3	ActiveIntronRegion	0	5.70	3.23	2.57	1.31	4.45	5.72	0.73	5.27	3.91	7.08	4.12	5.61	1.31	10.69	3.94	10.50	5.93	6.14	12.94	2.65	6.94	3.27	3.62	3.91	3.73	11.15	2.67	6.69	1.20
12	Ix_SR2	SilentIntronRegion	0	3.44	7.95	0.65	0.00	10.67	5.28	1.78	6.60	4.00	6.25	3.20	4.00	1.63	9.43	4.44	11.27	6.59	3.41	15.51	2.03	4.45	4.30	4.03	4.25	3.66	9.74	3.48	10.63	2.27
13	Ix_AR2	ActiveIntronRegion	0	7.29	9.77	2.86	0.00	4.36	10.89	2.22	11.18	5.56	11.23	6.25	5.26	2.47	13.49	12.04	19.23	4.61	3.89	21.72	1.76	6.45	1.62	0.41	13.82	4.90	11.59	8.93	14.51	4.13
14	Ix_SR1	SilentIntronRegion	0	5.70	7.53	0.50	2.36	4.98	5.20	1.52	5.18	5.77	10.62	2.62	4.41	0.86	10.09	16.97	10.05	5.70	1.51	16.29	5.79	3.58	1.33	2.62	2.75	6.62	13.44	2.06	11.39	5.33
15	Ix_AR1	ActiveIntronRegion	0	3.76	2.90	0.47	1.18	5.54	1.28	0.57	2.64	4.21	6.58	1.69	3.83	1.83	4.12	4.23	6.86	5.83	3.37	12.87	2.59	2.07	0.00	1.11	3.45	2.13	6.17	4.83	10.81	3.08
16	Ix	Intron	0	3.30	2.25	1.12	1.44	6.22	3.41	1.76	5.68	2.41	8.32	2.71	2.98	1.65	8.49	6.58	11.45	7.50	4.37	11.99	1.51	3.35	2.05	3.03	3.60	3.16	8.85	0.98	6.54	1.70
17	Ix_SR2	SilentIntronRegion	0	2.99	2.79	0.93	1.67	5.69	3.84	1.17	2.88	2.09	8.96	3.60	3.16	1.62	7.60	6.83	11.14	6.21	3.74	14.51	1.84	4.39	1.86	3.11	4.41	3.00	9.33	1.28	6.02	2.10
18	Ix_AR3	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	0.00	0.00	0.00	3.68	0.00	4.57	0.00	0.00	1.30	3.63	0.00	3.37	1.00	0.00	0.00	0.00	4.28	1.80	1.81	4.30	0.00	14.14	0.00	1.63	0.00
19	Ix_SR1	SilentIntronRegion	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	4.14	0.00	3.07	0.00	0.00	1.30	2.27	0.00	0.00	1.25	0.00	0.00	0.00	1.96	0.00	1.13	2.42	0.00	9.82	0.00	0.82	0.00
20	Ix_AR1	ActiveIntronRegion	0	4.05	1.66	1.44	1.23	7.55	3.07	2.77	10.12	3.08	7.93	1.63	2.97	1.78	10.40	6.79	12.85	10.00	5.67	9.33	1.15	1.96	2.48	3.11	2.59	3.68	8.37	0.63	7.84	1.26
21	Ix	Intron	0	19.13	12.60	3.56	3.63	3.47	15.33	4.29	9.71	8.58	13.32	9.89	6.94	5.38	20.01	26.81	26.32	19.98	16.21	21.70	6.15	8.82	5.48	4.22	15.49	6.81	9.72	6.50	11.91	7.72
22	Ix_AR1	ActiveIntronRegion	0	19.20	12.65	3.57	3.65	3.48	15.39	4.31	9.75	8.61	13.37	9.93	6.96	5.40	20.09	26.92	26.42	20.06	16.28	21.79	6.17	8.86	5.51	4.23	15.54	6.84	9.76	6.53	11.95	7.75
23	Ix	Intron	0	13.59	5.43	1.23	3.17	5.04	20.27	2.97	3.53	4.55	7.45	7.37	3.10	0.57	12.79	14.24	18.71	14.29	14.10	11.77	1.51	8.62	2.66	2.93	11.41	4.21	9.73	8.37	5.05	4.72
24	Ix_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.04	8.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix_AR1	ActiveIntronRegion	0	17.09	6.83	1.55	3.99	6.34	25.50	3.74	4.44	5.72	9.37	9.27	3.90	0.72	16.10	17.92	23.54	17.98	17.03	13.63	1.90	10.85	3.34	3.68	14.36	5.30	12.25	10.53	6.35	5.94
26	E2_Aa	NovelBoundary	0	29.43	9.70	8.52	21.35	0.00	3.53	10.18	12.49	14.34	10.43	6.26	9.79	0.00	12.50	8.77	22.11	6.35	33.13	32.37	7.61	5.62	6.56	2.12	5.86	3.67	24.55	0.00	0.00	0.00
27	ER2a	ExonRegion	0	26.61	8.80	7.39	2.07	3.37	12.00	5.82	16.17	8.12	12.96	6.24	3.74	2.52	13.37	11.03	20.47	9.70	24.77	7.38	3.07	6.19	3.91	4.49	10.30	7.64	17.52	0.79	1.88	6.71