Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	H3F3A	Gene	0	769.27	2064.35	541.59	1334.86	2077.32	1256.17	2687.22	1779.41	971.93	1720.38	1076.68	1045.11	1149.21	912.85	4853.30	1239.10	835.37	986.38	2438.41	1763.11	1104.71	1600.86	1076.66	1001.09	1001.54	1034.91	2207.76	551.60	1824.91
2	366816	Transcript	0	2.13	0.95	2.77	3.57	22.40	1.29	5.98	2.99	0.55	0.67	0.55	1.55	0.87	1.13	5.22	1.92	1.75	4.83	1.59	5.67	0.57	8.15	1.27	0.67	0.73	3.84	1.06	2.02	3.57
3	366815	Transcript	0	37.25	18.64	31.90	54.55	161.70	31.17	133.86	70.56	14.18	61.81	12.58	14.24	23.38	9.12	27.55	25.03	16.62	41.23	44.52	13.75	14.57	106.36	26.83	5.47	14.76	36.32	35.79	46.17	4.64
4	366814	Transcript	0	20.32	26.00	4.37	5.80	8.14	20.19	8.40	6.39	9.39	18.75	8.33	7.61	1.19	13.44	17.37	26.19	27.59	32.00	36.62	9.15	18.28	1.76	1.49	7.80	10.15	3.83	3.66	3.10	4.17
5	366813	Transcript	0	11.59	133.37	5.67	49.03	108.55	34.99	61.74	16.73	30.74	46.66	32.24	31.11	20.10	29.09	410.86	36.15	37.71	58.00	238.15	136.14	32.23	21.85	15.27	32.72	22.56	31.34	104.10	13.78	44.55
6	IG36_AR4	ActiveIntergenicRegion	0	3.72	3.50	1.04	3.10	4.71	2.80	4.16	2.15	1.64	7.42	0.85	1.51	0.27	5.24	10.08	9.03	17.27	4.13	0.65	4.26	1.78	1.65	0.18	3.07	3.02	3.23	0.19	0.17	4.96
7	IG36_SR3	SilentIntergenicRegion	0	2.70	4.84	0.81	2.91	2.33	2.32	1.80	1.56	1.29	4.95	1.38	1.63	0.41	2.62	5.37	3.35	10.78	4.87	1.67	2.77	2.82	0.50	0.07	2.69	2.61	2.84	0.41	0.79	3.23
8	IG36_AR5	ActiveIntergenicRegion	0	1.40	4.04	0.54	0.00	3.98	4.69	3.87	3.00	3.01	2.82	1.94	3.02	0.21	2.43	7.73	6.13	10.86	8.98	2.60	4.49	6.04	0.88	0.00	2.45	1.86	0.77	1.19	0.27	2.18
9	IG36_SR4	SilentIntergenicRegion	0	3.53	4.09	0.77	1.13	3.45	3.85	3.98	1.59	1.93	4.53	1.96	1.13	1.22	2.85	5.77	7.19	18.48	11.11	1.75	6.75	6.04	0.99	1.42	1.86	1.97	2.47	0.57	0.77	5.30
10	IG36_AR6	ActiveIntergenicRegion	0	4.70	0.00	0.13	0.00	0.00	1.02	1.13	1.01	0.00	1.58	0.00	0.24	0.00	1.68	4.76	0.33	1.30	7.81	0.00	3.17	0.78	0.00	0.00	0.00	0.35	2.59	1.00	0.00	0.00
11	ER1a	ExonRegion	0	4.25	1.90	2.83	7.13	15.92	2.59	9.04	3.95	1.11	1.34	1.10	1.48	1.74	2.26	10.44	3.84	3.51	9.66	3.17	7.29	1.13	9.21	2.55	1.35	1.45	6.00	2.12	1.94	3.93
12	E1_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	3.56	9.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E2c	KnownJunction	0	0.00	0.00	2.72	0.00	28.88	0.00	2.92	2.04	0.00	0.00	0.00	1.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.05	0.00	7.10	0.00	0.00	0.00	1.67	0.00	2.11	3.20
14	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	2.04	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	2.29	0.00
15	ER2a	ExonRegion	0	37.25	18.64	31.90	54.55	161.70	31.17	133.86	70.56	14.18	61.81	12.58	14.24	23.38	9.12	27.55	25.03	16.62	41.23	44.52	13.75	14.57	106.36	26.83	5.47	14.76	36.32	35.79	46.17	4.64
16	E2_Ab	KnownBoundary	0	57.51	39.07	4.21	92.96	315.08	47.42	198.02	81.86	18.52	79.05	12.69	16.20	25.22	12.72	72.55	42.38	4.95	104.80	105.20	22.25	17.97	168.70	23.94	6.04	11.21	49.65	63.17	82.49	3.00
17	E2_Ac	KnownBoundary	0	180.02	150.95	150.64	368.83	717.85	182.78	688.69	427.94	66.69	310.66	73.42	86.66	68.37	47.42	233.20	133.18	79.55	189.31	161.17	44.91	104.01	478.30	187.20	45.16	103.69	98.10	150.19	219.76	71.05
18	ER2b	ExonRegion	0	297.74	181.61	212.87	593.72	1275.04	198.02	923.41	625.00	85.07	349.94	95.32	111.03	142.71	110.57	609.13	246.08	125.36	348.16	280.60	170.38	135.44	766.16	310.59	79.80	155.05	282.97	245.77	236.12	184.07
19	ER2c	ExonRegion	0	3490.79	1689.09	2851.64	9654.53	15480.36	1516.54	7129.20	7437.17	1072.41	3219.33	1484.50	2120.80	2773.53	2273.47	9618.46	3890.46	1984.73	3327.04	2394.46	3437.90	1520.45	9040.05	4475.71	1529.07	2338.97	4342.12	3794.38	2533.47	5242.30
20	E2_Da	NovelBoundary	0	263.13	175.19	1141.45	1104.78	1213.01	111.73	542.17	637.15	69.52	247.34	130.30	469.66	633.89	406.64	1217.84	368.57	662.56	74.75	55.07	344.69	104.81	507.66	371.79	186.56	245.50	453.99	588.57	274.98	1235.10
21	E2a_E3b	KnownJunction	0	867.09	551.07	2616.99	2729.58	3335.16	517.85	4026.55	4818.63	518.48	926.74	680.17	2079.93	2020.33	1155.91	3491.08	978.34	1805.15	616.08	655.26	1026.13	469.05	1661.98	964.01	642.12	797.94	1489.51	1956.24	1246.58	3521.38
22	E2a_E5a	NovelJunction	0	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	I2	Intron	0	10.42	7.09	4.36	7.75	62.21	6.19	13.88	12.93	3.05	5.20	2.20	5.36	1.78	2.24	14.84	7.98	5.04	9.39	6.04	2.09	6.03	12.98	3.09	1.46	4.31	11.11	8.08	3.08	2.74
24	I2_AR1	ActiveIntronRegion	0	10.43	7.10	4.37	7.76	62.32	6.20	13.91	12.95	3.06	5.21	2.20	5.37	1.78	2.25	14.87	7.99	5.05	9.41	6.05	2.10	6.04	13.01	3.10	1.46	4.32	11.13	8.09	3.09	2.75
25	E3_Aa	NovelBoundary	0	13.92	0.00	1.45	0.00	28.30	9.32	5.03	11.69	2.89	0.00	0.00	6.36	0.00	3.17	0.00	10.33	2.36	9.25	0.00	0.00	10.83	1.85	2.46	0.00	1.52	6.27	12.08	4.54	0.00
26	ER3a	ExonRegion	0	14.62	10.52	10.21	13.96	30.28	10.18	18.66	19.65	5.88	14.63	5.56	10.88	7.07	8.74	23.62	16.63	12.32	10.92	16.92	5.26	7.41	11.25	6.13	4.13	7.95	10.81	14.97	6.37	11.93
27	E3_Ab	KnownBoundary	0	11.44	14.54	3.51	0.00	5.45	3.41	4.92	10.15	2.83	0.00	0.00	2.41	0.00	1.75	9.37	7.34	10.24	4.62	0.00	0.00	10.15	0.00	0.00	0.00	10.30	3.78	2.53	2.29	0.00
28	ER3b	ExonRegion	0	1974.07	1048.48	1094.49	1959.84	2469.45	1056.89	3639.99	5673.52	804.70	1474.09	552.61	1091.46	1513.71	1101.96	4011.42	1612.04	933.12	1406.50	1156.98	2059.02	987.95	5334.04	1134.13	949.32	1231.95	1737.38	912.85	984.73	2290.90
29	E3_Da	NovelBoundary	0	10.68	4.85	1.12	0.00	7.37	7.44	0.00	0.00	0.00	11.10	1.61	1.54	0.00	2.77	0.00	6.88	5.11	14.64	16.18	3.72	6.14	2.48	1.87	0.00	8.75	0.00	0.00	0.00	3.37
30	E3a_E4a	KnownJunction	0	1543.35	1854.08	773.56	2104.08	3083.01	1856.76	11167.24	6546.15	1520.28	4890.98	1358.74	1804.18	2816.09	1587.94	14589.99	5703.44	1640.95	4493.52	2767.17	2391.49	1891.16	3129.01	4075.07	1318.27	2947.32	4546.71	2097.78	1681.96	4606.47
31	I3	Intron	0	5.17	10.78	0.97	1.28	2.40	8.36	2.52	0.74	1.10	5.49	4.79	2.51	0.61	3.69	8.22	7.88	5.60	17.39	19.71	1.66	8.03	0.40	0.48	1.15	2.30	1.69	0.33	0.95	0.06
32	I3_AR1	ActiveIntronRegion	0	4.35	10.08	0.47	2.21	2.26	7.33	3.01	0.71	1.32	5.69	4.24	2.78	0.37	3.33	7.85	8.43	5.52	15.34	21.13	2.01	6.18	0.42	0.28	0.38	2.32	1.37	0.57	0.86	0.10
33	I3_SR1	SilentIntronRegion	0	6.39	11.91	1.69	0.00	2.63	9.92	1.88	0.79	0.83	5.29	5.63	2.17	0.95	4.25	8.84	7.23	5.80	20.48	18.01	1.19	10.70	0.39	0.78	2.26	2.31	2.15	0.00	1.08	0.00
34	E4_Aa	NovelBoundary	0	13.33	0.00	2.52	0.00	0.00	11.40	0.00	4.43	1.52	7.07	4.84	4.19	0.00	2.08	0.00	6.50	3.83	23.12	0.00	3.72	13.40	0.00	0.00	3.05	0.00	3.52	0.00	2.02	0.00
35	ER4a	ExonRegion	0	1482.07	2554.14	2830.44	3689.19	6329.99	2018.04	7858.18	5662.00	1242.66	5254.90	3913.60	4022.05	3369.43	1790.81	8911.37	2990.50	2973.03	2371.86	4103.37	2189.13	1673.58	2964.21	5019.66	1236.38	2755.13	5294.68	7247.32	3169.50	5929.74
36	E4_Da	KnownBoundary	0	23.36	35.87	7.45	0.00	13.85	17.04	0.00	20.80	2.62	14.34	4.24	5.90	0.00	10.64	16.34	53.78	24.42	23.12	32.15	13.15	11.27	1.94	1.97	7.60	12.69	9.70	0.00	2.20	5.88
37	E4a_E5a	KnownJunction	1	4123.44	5663.75	4341.80	5807.51	8491.69	2955.26	6649.50	11978.40	2304.16	5531.78	3596.00	3705.20	3351.84	3472.71	12596.60	3832.97	2850.89	3234.00	6957.05	5934.49	2564.18	9698.47	4447.44	3159.99	4069.36	4353.38	7787.80	2175.76	5126.93
38	ER4b	ExonRegion	0	20.32	26.00	4.37	5.80	8.14	20.19	8.40	6.39	9.39	18.75	8.33	7.61	1.19	13.44	17.37	26.19	27.59	32.00	36.62	9.15	18.28	1.76	1.49	7.80	10.15	3.83	3.66	3.10	4.17
39	E4_Db	NovelBoundary	0	7.73	3.78	0.00	9.49	25.79	23.17	4.46	0.00	4.66	14.70	6.42	1.72	0.00	12.32	33.29	6.50	26.09	23.12	16.18	0.00	12.84	0.00	2.07	5.68	1.67	0.00	0.00	4.22	4.95
40	I4	Intron	0	18.61	31.15	4.12	7.76	8.32	18.33	6.67	8.16	10.54	18.32	8.68	8.26	2.47	13.70	31.57	27.07	29.45	34.13	39.84	7.80	14.98	1.84	1.85	17.68	11.72	5.83	3.89	4.44	5.75
41	I4_SR1	SilentIntronRegion	0	14.99	23.78	2.53	6.85	8.39	16.79	6.02	5.52	8.77	16.27	5.62	6.45	0.89	8.80	21.47	18.40	20.38	33.28	35.58	6.50	14.10	1.51	0.97	10.99	6.70	3.83	1.63	2.17	2.63
42	I4_AR1	ActiveIntronRegion	0	18.49	29.23	4.78	10.34	6.51	16.72	6.59	9.91	8.10	16.59	10.15	6.53	2.04	9.08	28.64	20.18	30.39	34.75	41.62	9.30	13.80	1.11	2.23	13.33	11.36	6.43	5.29	4.99	5.47
43	I4_SR2	SilentIntronRegion	0	15.64	21.51	3.77	3.52	7.10	18.69	4.07	8.80	9.49	18.29	5.16	7.68	2.49	12.67	24.26	28.48	29.24	30.10	33.97	5.26	13.09	1.76	1.41	15.76	12.84	6.76	2.52	4.38	5.70
44	I4_AR3	ActiveIntronRegion	0	25.53	52.57	4.82	10.01	12.73	21.62	10.69	6.68	17.10	22.71	13.40	13.15	4.33	26.09	53.65	42.82	35.42	39.17	48.17	9.82	20.04	3.36	2.52	32.22	14.77	5.27	5.28	5.46	8.69
45	E5_Aa	NovelBoundary	0	622.18	1226.52	169.45	1425.94	2166.80	494.67	1276.52	1764.70	338.51	1041.66	716.59	357.13	263.73	305.69	2510.03	729.87	124.81	286.01	450.03	948.48	442.86	1550.31	735.69	563.40	627.49	741.99	1749.90	392.57	485.76
46	ER5a	ExonRegion	0	3923.07	7714.66	2433.38	6661.74	10335.44	5054.96	9857.55	10314.79	3101.64	7901.02	5110.32	4717.41	4910.13	4116.19	15785.37	4612.11	3560.92	3460.82	7842.29	6814.56	4386.24	8550.54	4850.51	4351.87	5340.00	5144.93	10549.17	2241.50	7372.13
47	E5_Da	KnownBoundary	0	3010.85	10597.26	1154.56	2175.04	5320.55	5813.72	11162.61	6532.52	4048.02	7869.72	4599.76	5140.27	5708.20	4444.90	18860.82	6136.58	4090.41	2103.94	12348.43	7775.71	5158.56	6084.70	4958.31	3825.26	3805.76	4199.97	8091.55	2131.10	8130.96
48	ER5b	ExonRegion	0	1908.14	9314.45	944.86	2986.04	4550.18	5154.83	9254.32	3135.24	4430.74	5730.56	3545.68	3170.64	3782.89	3192.96	20548.07	4308.95	2551.50	3389.38	11047.06	7224.67	4542.10	3328.86	2630.71	4059.60	2979.68	1977.95	7481.49	1061.45	5872.06
49	ER5c	ExonRegion	0	8.57	256.22	1.12	84.10	186.81	59.80	104.82	13.81	55.61	78.69	58.91	51.33	33.12	49.43	798.09	55.68	63.11	105.07	459.37	267.01	57.06	32.45	24.41	61.31	37.16	51.86	193.23	21.19	77.17
50	IG37_AR1	ActiveIntergenicRegion	0	0.00	2.92	0.00	0.00	0.00	0.00	1.46	1.13	0.69	0.00	0.66	0.00	0.00	0.00	5.91	0.00	1.06	0.00	2.26	1.25	1.43	1.00	0.00	0.00	0.00	0.00	0.71	0.00	1.34
51	IG37_SR1	SilentIntergenicRegion	0	0.90	3.61	0.40	6.23	2.04	2.10	0.64	2.82	0.60	0.60	1.89	0.00	0.81	0.73	8.13	1.35	4.79	0.83	5.23	6.91	2.14	1.36	0.00	3.60	1.20	0.66	7.15	0.07	2.86
52	IG37_SR2	SilentIntergenicRegion	0	0.58	1.15	0.16	2.94	0.00	2.34	1.50	5.21	0.00	0.60	0.32	2.43	1.37	1.30	6.16	2.34	2.06	2.14	7.45	3.76	1.92	1.02	1.06	2.93	0.77	0.42	2.32	0.79	2.86
53	IG37_AR2	ActiveIntergenicRegion	0	0.50	0.27	0.39	11.11	31.44	0.32	1.18	0.57	0.46	1.12	0.00	0.80	0.00	0.05	4.79	1.00	1.50	0.98	1.12	0.00	1.51	3.17	1.24	0.26	0.67	3.77	0.64	0.19	3.54
54	IG37_SR4	SilentIntergenicRegion	0	0.00	0.86	0.00	13.05	0.00	0.37	1.08	0.68	1.05	0.16	0.00	0.49	0.00	0.12	5.31	0.00	0.73	0.00	0.00	0.00	0.38	0.48	1.05	0.55	0.00	0.42	0.00	0.44	4.29