Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ARL8A	Gene	0	192.43	312.28	340.90	79.88	159.20	205.35	75.97	153.38	248.72	249.99	142.16	177.21	239.87	390.29	161.93	219.49	208.44	212.35	140.30	158.78	135.76	279.84	155.84	279.47	253.79	313.47	164.38	147.77	202.48
2	272217	Transcript	0	267.33	396.19	364.98	98.86	199.12	243.82	106.25	217.49	309.25	338.06	246.98	356.69	332.18	636.66	198.33	291.17	351.70	286.45	191.15	226.40	167.15	380.69	252.26	393.97	397.78	525.92	261.16	266.86	273.85
3	486225	Transcript	0	25.29	1.79	10.82	0.07	2.67	8.96	3.40	2.16	4.26	7.70	2.30	3.00	1.64	13.86	13.29	22.57	25.70	10.39	8.09	12.09	4.88	1.69	0.46	10.89	5.50	12.51	0.67	3.46	1.69
4	491358	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	IG45_SR2	SilentIntergenicRegion	0	0.00	0.00	3.44	0.00	3.44	2.65	2.57	10.86	3.36	3.05	0.42	0.43	0.00	3.30	3.24	2.37	4.57	1.36	0.81	2.91	2.11	0.00	0.00	0.49	0.45	2.21	0.78	0.84	1.26
6	IG45_AR1	ActiveIntergenicRegion	0	0.00	0.00	3.37	0.00	0.00	2.75	4.03	7.36	0.00	0.00	0.00	0.21	0.00	2.72	0.00	0.00	1.17	0.00	9.05	0.00	2.85	0.00	0.00	2.15	1.19	0.00	1.83	3.26	4.03
7	ER1a	ExonRegion	0	84.59	101.29	126.66	27.02	92.48	106.71	50.73	85.06	87.86	104.09	50.34	120.29	97.90	192.53	80.04	135.52	108.60	87.98	51.02	63.99	69.52	131.03	62.74	102.14	108.68	236.51	42.64	105.07	109.12
8	E1a_E2a	KnownJunction	1	301.12	319.74	321.23	97.92	120.55	151.09	100.87	163.68	243.35	283.09	231.91	369.93	311.02	617.02	310.34	279.45	311.73	258.14	177.58	207.74	138.74	304.34	195.13	298.66	352.56	630.84	176.48	322.20	283.29
9	I1	Intron	0	7.75	3.00	7.78	2.81	1.75	5.91	1.03	3.11	3.71	5.29	1.28	1.97	1.10	5.08	7.84	4.42	9.82	6.85	2.61	2.80	2.85	0.77	0.80	3.37	3.73	4.77	1.03	3.20	2.32
10	I1_SR1	SilentIntronRegion	0	2.81	2.82	5.75	1.96	2.49	2.70	0.73	0.40	1.13	2.00	0.52	0.83	0.24	2.82	2.22	2.43	4.54	5.68	0.47	1.22	0.52	0.00	0.36	1.25	1.78	3.94	0.95	1.78	1.90
11	I1_AR1	ActiveIntronRegion	0	10.64	4.49	9.44	2.82	1.36	7.76	1.17	7.01	2.20	5.20	1.31	3.05	2.27	6.88	9.40	3.70	14.38	7.19	2.95	3.72	2.12	1.51	0.88	3.03	5.31	2.30	0.74	3.52	3.37
12	I1_AR2	ActiveIntronRegion	0	11.27	5.06	15.88	4.15	2.83	8.18	1.19	4.82	2.90	9.73	4.03	2.08	4.29	8.15	20.24	5.33	14.78	8.64	3.60	1.88	4.08	0.79	0.96	6.20	4.20	10.39	0.80	4.99	1.86
13	I1_SR2	SilentIntronRegion	0	8.56	2.33	7.21	3.04	1.43	6.44	1.10	2.76	5.49	6.31	1.30	2.08	0.72	5.12	8.42	5.47	10.04	7.05	3.35	3.29	4.01	0.85	0.95	4.13	4.00	5.38	1.20	3.52	2.19
14	E2_Aa	NovelBoundary	0	9.97	4.85	8.77	8.41	0.00	10.13	7.72	0.00	2.56	11.22	1.17	7.95	0.00	9.39	0.00	10.56	23.75	0.00	8.09	0.00	3.53	0.00	0.00	2.69	3.75	5.28	0.00	8.31	1.45
15	ER2a	ExonRegion	0	346.24	369.53	407.28	141.74	213.28	251.36	95.91	259.87	307.23	355.76	235.32	383.33	331.17	685.84	190.97	291.50	370.23	320.93	189.75	272.36	164.83	451.98	267.47	389.92	460.95	531.19	228.56	254.53	288.24
16	E2_Da	NovelBoundary	0	0.00	4.07	1.02	0.00	0.00	0.00	0.00	0.00	3.01	7.67	0.00	0.00	0.00	4.34	0.00	6.27	3.98	0.00	16.18	0.00	2.01	0.00	4.04	8.43	4.93	0.00	0.00	4.58	0.00
17	E2a_E3a	KnownJunction	0	313.98	533.42	515.24	148.40	328.34	315.46	136.34	282.42	425.82	400.93	287.02	430.68	414.71	815.96	198.12	340.11	433.46	406.74	283.24	301.93	204.96	502.12	315.54	516.15	514.37	512.91	310.16	261.46	292.40
18	E2a_E4a	NovelJunction	0	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3_Aa	NovelBoundary	0	2.83	0.00	5.71	0.00	0.00	1.80	0.00	2.34	0.00	3.36	0.00	0.00	0.00	0.84	0.00	2.75	2.79	0.00	0.00	0.00	3.81	0.00	0.00	2.27	0.00	2.19	0.00	4.58	1.45
20	E3_Ab	NovelBoundary	0	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	1.34	0.00	0.00	3.37	0.00	0.00	0.00	0.00	4.91	0.00	0.00	3.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	342.96	484.20	563.50	122.85	274.98	311.23	137.88	336.92	400.42	432.27	272.77	416.34	407.63	843.19	175.86	345.19	426.73	354.25	238.06	304.11	200.26	537.58	322.23	533.91	529.71	516.44	283.16	270.59	290.71
22	ER3b	ExonRegion	0	334.69	457.55	889.75	144.77	263.52	268.20	128.07	291.69	367.51	374.90	238.95	418.48	436.92	780.77	201.22	318.03	442.96	373.46	222.22	290.64	178.88	476.47	269.56	473.84	418.36	477.48	223.37	251.03	294.91
23	E3_Da	NovelBoundary	0	2.77	9.31	3.91	0.00	0.00	3.53	0.00	1.99	2.38	7.11	0.00	3.04	2.99	4.65	7.77	13.77	9.88	4.62	0.00	3.39	1.68	0.00	0.00	0.00	1.48	0.00	0.00	3.95	3.37
24	E3a_E4a	KnownJunction	0	418.15	576.37	1200.97	199.30	384.64	283.15	151.85	324.67	420.24	430.17	289.80	455.23	500.43	965.63	307.55	357.33	521.40	424.33	250.19	325.09	219.93	589.83	288.21	584.70	536.42	671.74	263.35	297.94	310.76
25	I3	Intron	0	17.71	1.84	5.00	1.02	0.00	5.09	3.45	5.25	7.03	5.55	1.19	3.07	0.92	10.56	13.08	5.30	12.76	11.16	8.65	3.03	4.67	3.08	1.03	7.97	3.26	6.27	1.04	4.41	2.29
26	I3_SR2	SilentIntronRegion	0	17.76	1.84	5.02	1.02	0.00	5.11	3.46	5.26	7.05	5.57	1.19	3.08	0.92	10.59	13.12	5.32	12.79	11.19	8.67	3.04	4.69	3.09	1.03	7.99	3.27	6.27	1.05	4.42	2.29
27	E4_Aa	NovelBoundary	0	24.77	4.27	10.31	18.77	13.56	5.52	0.00	2.54	2.62	3.44	7.50	1.81	4.84	13.80	8.37	6.27	23.07	10.79	16.18	3.56	1.56	0.00	0.00	16.09	3.83	1.67	0.00	2.20	0.00
28	ER4a	ExonRegion	0	489.94	672.46	710.50	135.13	299.32	401.52	156.31	379.63	462.82	522.63	396.09	581.45	543.25	1143.26	304.82	452.17	682.10	465.64	321.14	393.58	271.71	682.41	395.84	653.70	705.63	766.94	600.31	398.87	392.71
29	E4_Da	KnownBoundary	0	22.83	3.78	6.68	0.00	0.00	13.62	2.52	4.53	4.02	3.71	4.08	0.00	3.22	9.13	0.00	18.36	24.17	13.87	0.00	2.89	3.25	2.48	1.82	11.66	1.52	1.80	0.00	6.83	1.29
30	E4a_E4c	KnownJunction	1	380.46	716.95	350.65	79.37	218.40	420.39	173.42	312.73	517.72	612.05	558.45	703.51	613.77	1105.22	288.02	475.82	724.96	416.37	291.33	327.41	290.72	583.26	503.68	722.09	675.99	1094.70	671.61	583.48	517.85
31	E4a_E5a	NovelJunction	0	23.00	4.36	10.86	0.00	12.53	5.72	2.12	9.46	26.01	10.75	5.73	11.39	23.37	23.31	0.00	11.02	11.05	22.99	0.00	0.00	7.58	23.09	4.28	16.27	33.34	26.01	0.00	0.00	5.51
32	ER4b	ExonRegion	0	25.29	1.79	10.82	0.07	2.67	8.96	3.40	2.16	4.26	7.70	2.30	3.00	1.64	13.86	13.29	22.57	25.70	10.39	8.09	12.09	4.88	1.69	0.46	10.89	5.50	12.51	0.67	3.46	1.69
33	E4_Ab	KnownBoundary	0	19.64	8.92	16.57	0.00	0.00	8.71	8.30	1.99	7.37	5.47	6.26	1.27	1.66	19.34	9.97	14.69	29.24	14.38	32.37	3.23	3.53	0.00	0.00	14.18	3.37	6.01	0.00	4.40	1.39
34	ER4c	ExonRegion	0	33.72	13.02	14.79	1.25	5.95	18.44	4.47	6.22	13.39	16.74	13.76	12.10	11.63	28.86	26.77	22.75	40.59	16.47	19.54	6.38	7.32	9.56	7.63	21.30	15.90	14.99	8.76	16.48	8.72
35	E4_Ac	KnownBoundary	1	26.84	0.00	4.61	0.00	0.00	15.27	0.00	2.44	9.56	3.79	4.59	5.84	0.00	19.48	26.31	6.43	20.51	4.62	32.15	0.00	2.05	1.80	2.07	7.12	5.53	3.69	0.00	15.32	0.00
36	ER4d	ExonRegion	0	552.57	923.60	493.08	121.80	237.85	743.10	345.81	537.57	908.76	1017.17	548.30	636.79	940.45	1340.77	425.40	664.71	736.60	641.48	435.02	459.48	466.39	854.44	586.58	855.39	1008.64	1283.79	415.32	591.85	772.69
37	E4_Db	NovelBoundary	0	2.65	0.00	2.79	0.00	0.00	8.59	0.00	2.29	3.29	3.36	0.00	0.00	0.00	10.32	16.94	6.81	8.35	4.62	8.09	0.00	3.77	0.00	0.00	2.69	6.25	2.19	0.00	2.29	0.00
38	E4b_E5a	KnownJunction	0	1003.76	1166.51	535.15	93.39	240.66	1018.16	244.42	887.62	1335.68	708.31	340.86	479.51	992.33	1463.24	414.19	612.30	617.81	699.17	477.46	707.82	663.14	1417.34	439.26	1107.66	1166.83	1166.41	307.83	344.00	728.77
39	E4b_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	I4	Intron	0	5.05	1.38	3.22	1.54	0.00	2.36	0.00	0.79	1.56	2.78	0.00	0.93	0.56	2.42	4.52	2.51	4.16	2.48	4.79	1.18	1.53	2.32	0.39	2.30	0.00	1.35	0.00	1.75	0.86
41	I4_SR1	SilentIntronRegion	0	5.10	1.39	3.25	1.55	0.00	2.38	0.00	0.80	1.58	2.81	0.00	0.93	0.56	2.44	4.56	2.53	4.19	2.50	4.83	1.19	1.54	2.34	0.39	2.32	0.00	1.36	0.00	1.76	0.87
42	E5_Aa	NovelBoundary	0	7.43	0.00	1.35	0.00	0.00	1.42	0.00	0.00	1.16	7.03	1.61	1.84	0.00	8.15	17.54	3.06	10.11	4.62	8.09	0.00	0.00	2.48	0.00	2.21	3.56	0.00	0.00	3.82	1.29
43	ER5a	ExonRegion	0	984.87	981.32	599.25	96.99	206.08	783.56	178.45	784.11	971.37	583.66	312.75	418.98	841.90	1474.10	336.63	497.35	582.84	515.09	350.16	645.42	529.19	1417.71	381.64	1081.80	1027.69	909.23	305.96	317.69	595.15
44	ER5b	ExonRegion	0	609.49	698.74	649.85	146.39	279.16	368.99	97.53	432.76	505.26	436.41	313.30	363.03	523.25	1100.37	333.45	378.00	434.27	433.36	317.24	416.25	265.34	941.76	305.04	832.04	639.27	610.73	357.71	243.85	371.14
45	E5_Db	NovelBoundary	0	9.02	0.00	4.43	0.00	12.67	9.71	0.00	0.00	3.87	0.00	0.00	3.07	0.00	3.30	7.57	17.59	9.30	0.00	0.00	3.64	1.64	0.00	2.51	13.64	3.60	6.05	0.00	5.89	0.00
46	E5b_E6a	KnownJunction	0	298.76	666.34	698.99	168.02	302.85	307.21	111.45	226.68	380.20	430.01	320.14	348.94	387.83	758.55	310.74	378.13	419.73	415.99	363.94	279.28	209.54	432.01	274.17	518.36	452.77	581.87	316.42	199.68	313.53
47	I5	Intron	0	4.43	0.00	0.86	7.41	1.68	3.79	1.04	0.63	1.74	1.00	1.23	0.74	0.56	4.21	4.12	3.42	3.34	6.09	2.75	2.58	1.72	0.93	0.31	4.08	1.97	1.90	0.95	2.53	0.58
48	I5_AR1	ActiveIntronRegion	0	4.61	0.00	0.90	7.75	1.76	3.90	1.09	0.66	1.82	1.04	1.29	0.77	0.58	4.38	4.31	3.58	3.50	6.36	2.88	2.70	1.80	0.97	0.33	4.26	2.06	1.98	0.99	2.57	0.60
49	E6_Aa	NovelBoundary	0	2.54	3.59	7.95	0.00	0.00	8.40	0.00	2.19	2.71	3.64	0.00	3.49	0.00	4.30	24.12	0.00	4.14	0.00	8.09	4.13	4.73	2.48	0.00	3.05	1.78	0.00	0.00	2.20	0.00
50	ER6a	ExonRegion	0	473.93	733.98	944.00	179.76	330.60	464.10	173.05	336.00	624.27	584.43	299.89	416.62	606.80	904.33	295.20	439.87	593.07	454.55	301.04	317.12	300.45	687.83	373.53	585.05	540.14	788.88	402.92	408.95	521.06
51	E6_Da	KnownBoundary	0	126.70	262.54	237.89	42.92	128.51	117.52	40.22	71.21	97.20	215.91	75.89	61.60	142.85	264.64	179.79	149.10	109.17	305.54	137.35	105.94	72.04	142.59	131.64	235.91	141.05	142.95	60.33	86.90	109.14
52	ER6b	ExonRegion	0	101.99	248.17	270.31	74.68	145.76	150.54	48.59	81.80	182.36	178.22	93.08	72.76	149.08	196.87	144.97	170.59	86.20	160.76	107.05	107.29	101.00	154.51	99.01	194.92	142.22	158.88	115.50	70.70	135.31