Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	DYRK3	Gene	0	19.15	18.77	4.05	4.49	88.22	14.39	28.35	40.44	6.45	48.10	22.92	26.38	21.40	9.03	3.42	4.78	3.52	10.57	33.74	9.69	7.32	5.06	48.85	6.84	7.76	3.48	72.04	23.16	9.84
2	391931	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.17	0.00	0.00	0.08	0.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.11	0.13	0.00	0.00	0.00	0.00	0.00
3	367109	Transcript	0	14.29	3.83	2.70	0.00	66.32	2.65	19.17	16.84	0.75	24.95	8.68	15.15	16.99	4.48	0.00	10.32	2.45	16.75	18.04	4.45	5.24	2.29	41.02	3.25	1.57	4.34	24.36	14.15	8.94
4	367108	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	367107	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	489878	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	441486	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.04	0.00
8	367106	Transcript	0	0.12	0.49	0.00	0.00	1.04	0.29	0.12	1.49	0.00	0.08	0.00	0.00	0.55	0.14	0.00	0.14	0.00	0.55	1.36	0.16	0.30	0.10	0.38	0.00	0.00	0.00	0.00	0.80	0.08
9	367105	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.17	0.00	0.00	0.08	0.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.11	0.13	0.00	0.00	0.00	0.00	0.00
11	E2_Aa	NovelBoundary	0	8.85	0.00	0.00	0.00	0.00	3.84	2.52	2.34	0.00	0.00	0.00	4.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.85	0.00	0.00	2.19	5.02	1.80	1.35
12	ER2a	ExonRegion	0	12.13	3.88	5.41	0.00	67.36	1.84	13.97	10.80	0.00	19.82	9.90	11.69	13.34	4.45	0.00	2.82	1.14	5.77	12.03	2.94	2.63	4.59	40.97	0.93	1.20	6.93	26.06	17.75	13.12
13	E2_Ab	KnownBoundary	0	34.27	12.60	13.75	0.00	244.19	7.52	38.96	30.66	0.00	74.46	27.36	32.11	32.93	11.21	0.00	7.27	3.62	13.74	24.28	7.61	7.38	16.53	118.59	5.44	5.53	24.20	82.55	45.43	39.12
14	ER2b	ExonRegion	0	14.19	2.58	6.31	0.00	65.45	2.68	13.32	13.76	0.59	21.40	5.13	9.21	12.01	4.79	0.00	4.08	1.45	9.73	10.46	6.32	2.47	4.87	30.96	1.72	2.73	4.57	14.36	11.97	8.51
15	E2_Ac	KnownBoundary	0	16.46	4.85	0.00	0.00	0.00	1.96	5.55	2.54	0.00	9.67	0.00	0.00	0.00	0.00	0.00	0.00	2.43	4.62	0.00	0.00	0.00	14.68	4.78	2.99	1.93	0.00	0.00	1.98	1.58
16	E2_Ad	KnownBoundary	0	11.03	0.00	0.00	0.00	0.00	1.50	0.00	18.66	0.00	7.47	5.31	3.01	4.39	3.32	0.00	0.00	0.00	0.00	0.00	15.46	3.85	4.47	13.69	0.00	3.52	0.00	1.99	2.02	0.00
17	ER2c	ExonRegion	0	28.40	3.28	1.12	0.00	3.74	2.75	8.57	28.08	0.00	16.24	5.95	7.42	5.20	5.44	0.00	1.90	2.00	13.65	9.05	16.86	3.57	12.62	16.27	2.15	4.29	1.57	4.58	5.71	1.68
18	ER2d	ExonRegion	0	24.23	8.93	0.80	0.00	21.77	5.71	11.26	27.66	0.37	23.07	7.43	9.81	11.55	7.73	0.00	2.37	2.20	15.90	12.69	11.61	3.38	5.13	26.34	2.95	3.11	2.87	11.19	4.54	2.45
19	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
20	E2a_E3a	KnownJunction	0	3.01	8.24	0.00	0.00	7.37	1.61	2.35	0.00	0.00	8.23	5.76	5.54	1.62	1.17	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	6.60	0.00	0.00	1.67	0.00	2.11	0.00
21	E2a_E4a	KnownJunction	0	16.46	3.78	0.00	0.00	65.29	3.45	24.37	22.89	1.49	30.08	7.47	18.61	20.64	4.50	0.00	17.82	3.76	27.74	24.05	5.95	7.86	0.00	41.07	5.56	1.93	1.76	22.66	10.56	4.75
22	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	4.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.93	0.00	0.00
23	ER2e	ExonRegion	0	16.79	13.14	0.00	0.00	56.46	6.42	24.52	23.32	1.12	39.22	13.69	21.23	19.05	9.22	0.00	10.12	3.01	24.56	30.93	5.62	4.28	0.00	44.00	6.09	2.38	6.02	24.42	14.13	8.28
24	ER2f	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.93	0.00
25	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00
26	ER2g	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
27	ER2h	ExonRegion	0	0.37	0.00	0.00	0.00	0.00	0.56	0.35	0.96	0.00	0.25	0.00	0.00	0.00	0.21	0.00	0.43	0.00	1.02	0.00	0.48	0.00	0.31	0.00	0.00	0.00	0.00	0.00	0.05	0.23
28	ER2i	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.85	0.00
29	ER2j	ExonRegion	0	0.00	1.48	0.00	0.00	3.11	0.31	0.00	3.52	0.00	0.00	0.00	0.00	1.66	0.22	0.00	0.00	0.00	0.65	4.07	0.00	0.91	0.00	1.15	0.00	0.00	0.00	0.00	2.36	0.00
30	E2_Dd	NovelBoundary	0	0.00	0.00	0.00	0.00	34.48	1.96	0.00	0.00	0.00	1.64	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	16.18	4.05	0.00	0.00	0.00	0.00	0.00	0.00	25.35	2.29	0.00
31	E2d_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I2	Intron	0	0.50	1.01	0.00	0.00	3.43	1.73	0.16	0.00	0.00	1.93	0.37	0.19	1.11	0.07	0.00	0.78	0.70	0.15	6.27	0.86	0.11	0.00	0.00	0.00	0.00	0.25	0.29	1.02	0.21
33	I2_SR1	SilentIntronRegion	0	0.51	1.02	0.00	0.00	3.44	1.73	0.16	0.00	0.00	1.93	0.38	0.20	1.12	0.07	0.00	0.78	0.70	0.15	6.30	0.86	0.11	0.00	0.00	0.00	0.00	0.25	0.29	1.03	0.21
34	E3_Aa	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.72	4.49	0.00
35	ER3a	ExonRegion	0	1.87	3.32	0.21	0.00	5.72	4.56	7.91	1.00	0.61	20.87	8.86	6.92	0.33	1.84	0.00	0.00	0.97	5.23	4.48	3.26	0.00	1.94	11.45	1.17	1.38	0.90	15.96	6.38	3.27
36	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
37	E3a_E4a	KnownJunction	0	0.00	0.00	1.22	0.00	7.37	0.00	9.67	0.00	0.00	16.98	7.85	11.42	0.00	2.15	0.00	0.00	2.41	0.00	0.00	3.31	0.00	0.00	16.10	0.00	1.44	0.00	23.21	3.77	0.00
38	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	14.74	0.00	0.00	2.29	1.13	3.99	0.00	2.62	4.78	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.26	0.00	0.00
39	ER4a	ExonRegion	0	37.95	17.80	6.54	4.31	118.67	17.20	49.98	38.99	3.31	62.53	48.14	42.13	30.64	11.71	2.10	9.54	3.22	19.52	54.23	15.84	7.87	6.25	84.08	5.01	14.60	9.08	92.64	38.86	22.57
40	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
41	E4a_E5a	KnownJunction	0	24.13	35.39	6.70	20.71	207.06	26.05	43.77	52.45	5.36	70.18	54.00	35.81	20.09	10.75	0.00	14.38	4.43	23.12	48.55	17.61	14.60	4.33	65.90	2.75	22.77	0.00	125.93	28.94	19.81
42	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.58	0.00
43	E5_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER5a	ExonRegion	0	46.31	46.46	8.59	8.79	187.93	34.34	64.07	76.50	10.62	122.82	69.91	66.30	44.93	21.98	7.22	11.60	7.95	21.88	75.16	25.31	17.80	9.83	115.09	12.86	21.86	4.23	164.28	49.50	20.23
45	E5_Da	KnownBoundary	0	48.31	57.49	8.84	8.84	224.00	25.86	64.25	63.10	13.49	140.05	77.82	56.66	38.12	25.68	8.37	9.03	6.91	23.89	89.02	14.97	18.21	8.51	150.61	10.65	13.68	9.48	274.68	44.75	16.80
46	ER5b	ExonRegion	0	37.16	39.30	8.76	8.84	182.84	30.74	60.45	100.87	16.34	97.37	38.56	53.67	48.95	18.79	4.25	9.12	7.48	22.12	74.32	18.35	15.85	11.52	103.22	16.89	14.73	8.71	158.90	51.66	20.94
47	E5_Db	KnownBoundary	0	8.38	37.81	3.09	0.00	220.62	31.58	57.10	6.37	18.79	72.62	38.88	39.40	21.37	4.68	0.00	6.58	2.41	23.12	97.11	15.96	33.33	0.00	55.46	10.53	1.74	0.00	193.97	24.22	14.49
48	ER5c	ExonRegion	0	4.45	17.17	2.10	0.00	132.48	20.50	23.45	10.58	5.63	41.16	32.68	26.88	12.04	4.45	3.26	2.40	1.48	9.43	32.48	12.49	10.40	0.00	36.58	5.34	1.19	0.99	129.44	14.90	7.95
49	E5_Dc	NovelBoundary	0	2.48	4.56	0.92	0.00	19.90	8.59	12.93	11.30	3.05	12.70	17.34	6.81	5.45	2.75	0.00	7.19	2.48	0.00	0.00	0.00	3.57	0.00	20.49	0.00	0.00	4.29	27.83	3.91	0.00
50	E5_De	NovelBoundary	0	10.32	8.73	0.00	0.00	46.86	8.06	2.17	0.00	2.38	16.46	2.91	4.61	6.15	2.24	0.00	3.37	3.49	0.00	0.00	3.14	5.70	0.00	19.40	0.00	0.00	0.00	14.91	0.00	0.00
51	ER5d	ExonRegion	0	0.00	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.82	0.00	0.91	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.00
52	ER5e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	I5_AR1	ActiveIntronRegion	0	8.99	24.14	1.39	0.00	80.04	11.22	5.72	16.52	5.60	38.75	14.17	26.24	12.29	9.06	1.99	2.60	3.32	6.73	17.72	3.81	8.04	0.00	36.62	1.86	2.47	4.06	64.83	7.56	7.72
54	I5_SR1	SilentIntronRegion	0	11.70	20.29	3.36	0.00	53.66	10.84	10.91	21.80	6.61	52.93	30.94	33.15	18.33	10.70	0.00	3.79	7.95	4.44	21.68	3.23	5.68	1.86	58.03	3.63	3.21	4.41	74.88	15.86	6.11
55	I5_AR2	ActiveIntronRegion	0	6.38	32.90	2.55	0.00	91.25	18.16	10.44	14.84	8.08	53.45	27.00	30.02	18.05	8.92	0.00	2.56	7.11	6.85	31.06	3.42	9.45	1.66	54.12	5.55	4.28	4.02	101.23	30.35	11.42
56	I5_AR3	ActiveIntronRegion	0	6.40	19.76	0.27	0.00	44.26	9.01	2.94	10.18	0.82	27.56	8.13	15.62	7.24	5.35	0.00	0.90	0.67	7.29	14.16	3.37	9.23	0.00	29.01	3.10	3.12	0.00	33.20	19.12	1.96
57	I5_AR4	ActiveIntronRegion	0	3.59	27.18	0.64	0.00	102.78	12.47	4.07	10.63	1.33	32.59	13.95	22.62	15.18	7.52	0.00	2.09	1.24	3.23	36.90	2.52	5.81	0.94	43.01	4.08	3.33	0.32	66.93	14.75	5.12
58	I5_SR3	SilentIntronRegion	0	2.49	59.13	0.00	0.00	122.45	15.39	8.45	12.17	0.40	45.83	17.01	22.54	13.95	7.70	0.00	5.06	5.62	9.42	19.86	5.71	6.26	0.00	46.72	1.25	5.58	6.08	91.34	18.30	10.48
59	I5_AR5	ActiveIntronRegion	0	7.87	30.67	1.70	0.66	128.37	20.74	10.76	9.03	6.26	51.35	27.72	30.43	19.36	7.16	1.01	3.42	6.90	6.71	36.74	1.23	9.28	2.36	47.05	4.55	7.56	2.93	119.16	24.40	9.84
60	I5_SR4	SilentIntronRegion	0	9.44	30.88	3.10	1.31	95.44	15.43	7.90	10.12	6.14	50.33	31.08	40.11	19.25	9.61	0.00	3.20	5.36	8.55	32.78	4.33	8.30	3.12	48.12	9.53	9.06	4.43	122.42	28.95	5.10
61	I5_AR6	ActiveIntronRegion	0	9.14	32.91	3.95	0.00	91.39	10.81	9.82	22.57	9.38	47.00	19.64	30.91	18.76	9.75	0.88	2.04	5.82	7.40	32.45	4.91	7.85	1.88	55.35	6.37	9.18	4.93	89.79	31.16	8.97
62	I5_SR5	SilentIntronRegion	0	9.78	33.61	3.01	0.00	67.26	13.26	12.25	11.75	15.20	37.19	16.22	21.23	22.07	7.65	0.00	2.38	7.48	7.72	29.07	5.44	8.12	2.00	43.64	8.78	9.04	1.60	50.46	24.18	5.53
63	I5_AR7	ActiveIntronRegion	0	5.39	31.07	1.63	0.82	102.80	10.18	9.77	13.84	16.00	36.90	15.52	22.04	18.87	5.81	1.85	3.09	2.66	5.47	29.47	4.45	7.20	1.76	32.39	6.79	7.90	1.94	98.06	20.75	9.88
64	I5_SR6	SilentIntronRegion	0	3.87	8.72	0.55	0.00	25.49	6.25	6.13	3.79	8.97	26.87	14.40	12.05	11.85	3.84	0.00	1.76	1.37	3.00	9.74	0.00	3.76	0.84	24.80	7.51	3.63	0.32	67.59	9.14	6.37
65	I5_AR8	ActiveIntronRegion	0	5.21	11.12	0.81	0.00	22.03	4.86	4.18	5.79	8.57	23.45	6.84	11.54	17.88	3.02	1.37	1.09	3.10	2.92	15.67	0.27	2.97	0.71	15.87	6.50	4.86	0.80	38.94	9.04	4.90
66	I5_SR7	SilentIntronRegion	0	0.00	0.00	0.00	0.00	4.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	I5_AR9	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	3.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.55	3.83	0.00	0.00	0.00	1.33	9.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45
69	ER6a	ExonRegion	0	1.74	1.63	0.00	2.18	10.91	0.47	1.30	1.25	1.04	1.71	0.77	0.94	0.66	0.40	3.23	0.48	0.51	0.20	1.19	0.19	0.00	0.24	0.12	0.44	0.44	0.05	0.93	0.51	0.29
70	ER6b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00