Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BATF3	Gene	0	38.72	16.27	13.55	7.01	1.38	23.88	23.64	108.87	20.87	21.77	12.53	9.60	46.34	4.75	9.90	14.14	12.26	28.60	2.46	4.14	19.06	40.33	7.51	19.25	10.80	11.17	4.58	1.62	3.57
2	243440	Transcript	0	22.94	18.93	9.60	4.67	0.40	22.90	29.89	95.11	13.24	25.51	7.41	9.70	48.32	4.23	6.10	9.85	7.07	29.89	0.52	4.82	18.66	34.96	13.02	10.65	3.21	10.05	2.77	2.40	3.08
3	478275	Transcript	0	4.05	2.24	1.04	0.86	0.29	5.23	0.94	4.02	2.26	1.49	1.34	1.59	1.72	1.34	1.21	2.96	4.37	7.70	0.77	0.34	3.26	0.83	0.30	4.49	1.15	1.29	0.78	0.40	0.80
4	471382	Transcript	0	0.25	0.00	0.00	0.00	0.00	4.76	0.02	2.56	0.03	0.20	0.00	0.07	0.08	0.01	0.00	0.00	0.00	1.33	0.00	0.00	0.00	1.92	0.00	9.35	0.00	0.00	0.00	0.00	0.03
5	IG13_AR1	ActiveIntergenicRegion	0	0.07	2.77	0.00	0.00	0.00	0.44	0.33	0.59	2.45	1.17	0.00	0.00	1.67	0.73	0.00	1.71	0.96	0.62	0.00	0.00	2.22	0.00	0.29	1.39	1.06	0.00	0.00	1.05	0.86
6	ER1a	ExonRegion	0	12.38	8.48	7.55	9.35	0.80	11.50	13.67	36.10	3.65	8.55	3.14	2.26	12.32	1.66	4.63	5.55	3.04	12.77	1.04	1.71	9.53	18.54	3.33	2.46	1.23	4.01	0.72	0.26	1.24
7	E1a_E2b	KnownJunction	0	33.50	29.38	11.66	0.00	0.00	34.30	46.12	154.12	22.84	42.46	11.67	17.14	84.32	6.80	7.57	14.15	11.10	47.01	0.00	7.94	27.80	51.39	22.70	18.84	5.19	16.09	4.82	4.54	4.92
8	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	8.55	0.00	0.00	0.00	0.00	0.00	0.00	2.29	1.37	1.48	1.49	0.00	0.00	2.66	0.00	0.00	4.73	0.00	0.00	0.00	0.00	0.00	0.00	2.69	0.00	7.72	0.00	0.00	0.00
10	ER2a	ExonRegion	0	4.05	2.24	1.04	0.86	0.29	5.23	0.94	4.02	2.26	1.49	1.34	1.59	1.72	1.34	1.21	2.96	4.37	7.70	0.77	0.34	3.26	0.83	0.30	4.49	1.15	1.29	0.78	0.40	0.80
11	E2_Ab	KnownBoundary	0	7.73	4.27	0.00	0.00	0.00	11.13	5.49	17.82	11.36	11.38	0.00	0.00	1.37	3.19	0.00	0.00	5.38	14.00	0.00	0.00	4.01	9.33	4.83	0.00	1.74	0.00	0.00	0.00	2.97
12	ER2b	ExonRegion	0	129.31	56.19	33.09	24.89	4.79	72.99	83.46	475.02	78.08	76.09	39.16	40.97	175.10	15.72	28.43	57.48	27.40	91.93	4.40	11.43	59.33	154.74	27.23	55.70	40.52	46.29	17.61	6.83	10.91
13	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	2.00	6.20	1.20	0.00	1.35	0.00	0.00	3.33	0.00	0.00	0.00	3.61	0.00	0.00	3.05	4.81	0.00	0.00	0.00	0.00
14	E2a_E4a	KnownJunction	0	128.06	63.31	37.32	20.28	0.00	83.22	107.79	445.55	83.32	95.67	66.02	54.64	225.74	16.24	69.56	60.74	32.80	84.51	16.18	26.88	80.78	164.38	16.74	64.66	38.45	42.83	12.47	4.36	9.90
15	I2	Intron	0	6.04	2.39	1.25	0.43	0.20	2.90	0.24	4.89	1.68	2.93	0.65	1.18	1.33	0.57	0.83	2.44	3.18	7.43	0.71	0.28	3.82	0.22	0.29	1.95	1.52	0.19	0.00	0.16	0.40
16	I2_SR1	SilentIntronRegion	0	6.04	2.39	1.25	0.43	0.20	2.90	0.24	4.89	1.68	2.93	0.65	1.18	1.33	0.57	0.83	2.44	3.18	7.43	0.71	0.28	3.82	0.22	0.29	1.95	1.52	0.19	0.00	0.16	0.40
17	I2	Intron	0	5.84	2.73	1.44	0.00	0.66	3.53	1.16	5.17	1.95	3.44	1.47	1.60	1.34	0.85	0.48	3.20	4.12	7.41	0.49	0.23	3.72	0.52	0.18	2.58	1.98	0.85	0.53	0.00	0.31
18	I2_SR1	SilentIntronRegion	0	6.20	2.06	1.40	0.00	0.53	3.42	0.98	4.92	1.32	3.20	1.13	1.40	1.00	0.82	0.15	3.51	3.99	7.44	0.52	0.07	4.01	0.54	0.05	1.34	2.12	0.68	0.05	0.00	0.42
19	I2_AR1	ActiveIntronRegion	0	4.78	6.88	1.55	0.00	0.00	1.37	1.53	7.09	2.18	2.95	1.19	0.69	1.35	0.70	0.00	2.98	3.96	8.70	1.02	0.44	1.58	0.58	0.58	3.46	1.82	0.76	0.00	0.00	0.16
20	I2_SR2	SilentIntronRegion	0	5.06	2.00	1.30	0.00	1.64	5.52	1.74	5.26	3.99	4.16	2.78	2.69	2.12	1.04	1.94	2.55	5.32	7.18	0.00	0.46	4.32	0.00	0.30	4.70	1.81	1.72	2.46	0.00	0.03
21	I2_AR2	ActiveIntronRegion	0	1.76	10.60	0.00	0.00	0.00	0.00	0.00	1.51	0.00	1.19	0.98	0.00	2.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00	0.00	0.00	0.00	0.00
22	I2_AR4	ActiveIntronRegion	0	8.71	2.05	3.09	0.00	0.00	3.05	0.74	5.44	2.08	5.87	1.32	2.28	2.16	1.17	0.00	3.67	2.76	8.54	1.18	1.02	3.69	2.66	0.67	8.74	2.11	0.00	0.00	0.00	0.50
23	E3_Aa	NovelBoundary	0	10.20	0.00	2.17	0.00	0.00	11.16	2.80	21.45	4.42	3.48	0.00	1.51	1.31	1.11	0.00	3.67	7.50	9.25	0.00	0.00	2.05	0.00	0.00	6.88	1.44	6.91	0.00	0.00	0.00
24	ER3a	ExonRegion	0	0.50	0.00	0.00	0.00	0.00	3.23	0.05	0.98	0.05	0.40	0.00	0.14	0.15	0.02	0.00	0.00	0.00	2.67	0.00	0.00	0.00	1.55	0.00	7.15	0.00	0.00	0.00	0.00	0.06
25	E3_Da	NovelBoundary	0	19.76	4.85	0.00	0.00	0.00	6.56	0.00	4.28	10.72	5.19	0.00	1.27	7.10	0.00	0.00	0.00	6.05	10.02	0.00	0.00	3.77	0.00	0.00	7.78	1.55	5.28	0.00	0.00	3.07
26	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	6.29	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	11.54	0.00	0.00	0.00	0.00	0.00
27	I3	Intron	0	3.57	3.83	1.74	0.00	0.00	4.29	2.52	6.90	3.62	3.01	2.48	1.16	2.29	0.76	1.14	3.62	1.55	7.42	0.00	0.57	2.08	1.88	0.38	6.27	1.79	0.33	1.15	0.34	0.98
28	I3_AR1	ActiveIntronRegion	0	3.59	3.87	1.75	0.00	0.00	4.33	2.54	6.95	3.65	3.03	2.50	1.17	2.31	0.76	1.15	3.65	1.57	7.48	0.00	0.58	2.09	1.89	0.38	6.32	1.80	0.33	1.16	0.34	0.98
29	E4_Aa	NovelBoundary	0	14.69	3.49	4.19	0.00	0.00	1.96	2.80	16.17	10.08	1.72	1.58	4.61	1.88	0.00	9.37	9.33	6.10	19.26	0.00	0.00	0.00	8.80	2.51	8.49	1.70	2.19	0.00	0.00	0.00
30	ER4a	ExonRegion	0	143.88	56.67	51.96	21.42	4.43	79.38	88.25	405.40	77.43	81.71	47.46	32.70	179.25	15.09	36.31	45.63	39.29	90.59	8.17	15.89	65.93	153.09	28.48	67.18	40.51	39.22	16.11	5.24	12.13