Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ANGPTL1	Gene	0	9.83	5.12	0.38	12.68	2.20	2.41	3.35	0.69	2.49	5.86	2.27	2.49	1.08	10.19	7.02	5.28	6.58	3.38	9.05	20.03	10.15	0.95	34.85	25.11	14.61	3.58	11.26	3.25	9.33
2	234816	Transcript	0	1.87	1.75	0.06	1.77	1.17	0.56	2.07	0.41	1.09	2.96	0.42	0.96	0.40	3.10	2.64	0.88	2.16	1.35	4.56	6.17	4.90	0.13	18.16	6.29	4.58	1.02	2.78	0.77	3.42
3	367629	Transcript	0	0.00	0.00	0.00	19.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.00	3.29	0.86	4.62	0.00	14.06	0.00	0.00	11.18	5.08	0.00	0.00	0.00	0.00	0.00
4	444255	Transcript	0	3.37	4.11	0.02	4.57	2.76	2.97	0.07	0.00	2.13	1.11	0.28	0.00	0.28	3.97	0.00	5.06	4.65	0.05	1.78	1.86	6.21	0.00	4.46	2.57	3.06	0.00	8.80	0.00	3.28
5	415564	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	1.63	1.58	0.00	0.08	0.00	1.73	0.00	0.49	0.00	2.55	9.05	2.54	2.62	0.00	23.16	2.22	1.48	0.00	0.00	0.05	0.17
7	ER1b	ExonRegion	0	1.21	2.34	0.00	1.93	0.00	0.25	1.38	0.00	1.14	2.82	0.23	1.33	0.19	2.61	2.59	2.76	2.56	1.23	3.37	11.69	6.59	0.00	29.54	8.95	2.21	0.00	0.00	0.90	2.88
8	E1_Da	NovelBoundary	0	5.43	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	3.04	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	4.93	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00
9	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	5.44	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	3.64	6.34	0.00	22.06	5.56	3.86	0.00	0.00	0.00	7.40
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	19.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.00	3.29	0.86	4.62	0.00	14.06	0.00	0.00	11.18	5.08	0.00	0.00	0.00	0.00	0.00
11	Ix_AR2	ActiveIntronRegion	0	3.83	4.22	0.00	0.00	0.00	0.49	0.69	0.00	2.87	2.09	0.28	0.29	1.11	5.14	6.79	0.59	3.39	0.23	0.76	3.54	1.72	0.64	0.00	1.54	1.17	0.87	0.00	0.78	0.00
12	E2_Aa	NovelBoundary	0	2.71	4.07	1.54	0.00	0.00	0.00	0.00	0.00	1.46	9.51	0.00	0.00	3.25	9.37	0.00	0.00	15.08	0.00	0.00	4.13	11.47	0.00	11.97	5.56	5.57	8.15	18.98	4.58	1.68
13	ER2a	ExonRegion	0	3.37	4.11	0.02	4.57	2.76	2.97	0.07	0.00	2.13	1.11	0.28	0.00	0.28	3.97	0.00	5.06	4.65	0.05	1.78	1.86	6.21	0.00	4.46	2.57	3.06	0.00	8.80	0.00	3.28
14	E2_Ab	KnownBoundary	0	4.72	4.85	0.00	10.35	7.37	1.88	0.00	0.00	4.81	1.64	1.33	0.00	1.34	10.64	0.00	3.44	10.60	0.00	8.09	3.80	6.86	0.00	9.01	5.20	6.78	0.00	9.59	0.00	7.40
15	ER2b	ExonRegion	0	9.93	10.91	1.55	14.42	0.87	2.56	2.07	0.88	0.74	3.54	2.04	1.43	0.46	8.64	4.68	7.29	7.54	3.68	12.17	14.83	11.01	0.84	22.16	15.93	15.22	4.30	4.10	0.00	8.11
16	E2_Da	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	1.52	0.00	2.53	0.00	3.83	0.00	0.00	3.87	0.00	8.09	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.07	0.00
17	E2a_E3a	KnownJunction	0	10.44	4.85	0.00	0.00	0.00	3.22	0.00	0.00	0.00	5.67	0.00	0.00	0.00	3.04	7.97	5.74	6.44	0.00	8.09	28.04	9.95	0.00	12.31	17.17	6.67	0.00	0.00	0.00	1.75
18	Ix_AR1	ActiveIntronRegion	0	1.08	3.42	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00	0.00	0.77	0.00	1.70	1.38	1.48	0.45	0.00	0.08	0.00	0.43	0.00	0.00	0.00	0.00	0.00	0.55	2.31	0.00
19	E3_Aa	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.95	0.00	0.00	0.00	2.35	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
20	E3_Ab	NovelBoundary	0	7.96	4.46	0.00	17.69	0.00	3.07	0.00	0.00	2.56	1.40	0.00	0.00	3.25	15.62	0.00	14.15	8.62	0.00	24.28	14.31	22.30	0.00	39.20	11.19	21.71	1.76	7.45	2.29	3.14
21	ER3a	ExonRegion	0	9.45	6.08	0.00	14.63	0.00	2.95	0.00	0.00	1.00	3.58	0.00	0.14	2.69	8.37	2.70	10.40	8.87	4.04	14.92	25.71	19.92	0.00	30.74	17.77	15.56	1.11	5.49	1.63	4.18
22	ER3b	ExonRegion	0	15.10	9.24	1.16	7.77	0.00	3.75	4.23	0.00	3.68	6.01	1.14	4.79	1.94	10.74	1.59	8.78	9.93	5.10	19.95	16.94	10.25	0.81	56.23	41.79	20.92	2.64	23.02	2.64	15.92
23	E3_Da	KnownBoundary	0	28.20	0.00	2.42	0.00	0.00	7.10	4.58	0.00	1.34	9.35	3.76	1.42	1.43	15.69	8.37	6.43	6.51	0.00	24.28	27.21	15.64	0.00	41.12	48.45	29.21	5.45	19.88	2.07	24.76
24	E3a_E3c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER3c	ExonRegion	0	15.81	0.00	1.11	22.81	2.29	0.95	0.33	0.00	2.42	4.38	1.05	1.68	1.70	15.05	9.97	9.05	8.38	3.00	11.00	25.79	7.54	1.69	43.50	35.48	21.83	7.24	10.10	3.99	11.49
26	E3_Ac	KnownBoundary	0	8.55	0.00	0.00	62.12	0.00	0.00	0.00	0.00	6.30	6.87	0.00	4.76	1.82	14.16	0.00	3.44	12.00	4.62	16.18	27.87	3.65	0.00	52.84	20.04	26.67	1.59	0.00	3.95	22.55
27	ER3d	ExonRegion	0	21.72	0.00	0.03	20.11	3.15	2.34	6.80	0.00	4.13	7.46	1.35	3.22	1.08	14.30	1.96	3.42	7.99	5.23	19.08	26.68	11.85	1.46	56.64	36.46	23.63	4.10	12.73	5.73	17.62
28	E3_Db	KnownBoundary	0	8.14	0.00	0.00	10.78	7.37	0.00	2.23	0.00	5.12	7.51	1.36	1.33	0.00	16.88	0.00	3.14	5.15	9.89	0.00	20.10	6.90	0.00	42.16	25.90	11.06	0.00	6.66	3.50	2.91
29	ER3e	ExonRegion	0	13.87	3.00	0.71	20.83	3.36	2.81	7.40	0.00	3.46	8.85	6.47	1.67	0.97	13.89	3.62	5.21	8.99	5.71	13.18	30.03	13.30	1.32	68.18	37.96	25.53	3.69	13.51	5.38	13.65
30	E3_Dc	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	0.00	1.66	0.00	2.17	0.00	0.00	0.00	0.00	0.00	7.53	0.00	0.00	2.46	2.87	1.93	2.19	0.00	0.00	0.00
31	E3c_E4a	KnownJunction	0	8.79	9.70	0.00	19.84	0.00	3.68	4.98	0.00	0.00	2.00	1.42	1.54	0.00	13.80	0.00	0.00	4.55	4.62	0.00	25.97	6.06	2.04	71.26	54.73	20.34	0.00	17.49	5.98	5.02
32	Ix_AR4	ActiveIntronRegion	0	4.59	8.04	0.35	0.00	1.74	0.00	0.39	0.00	1.60	2.13	0.00	2.42	0.00	3.29	1.96	0.88	4.42	0.69	3.42	0.98	2.54	3.21	0.04	1.53	1.86	3.36	3.92	2.54	2.38
33	Ix_AR3	ActiveIntronRegion	0	3.50	6.22	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.81	0.00	0.00	1.86	5.75	0.00	1.53	0.00	0.00	0.00	1.73	0.00	0.33	1.70	0.00	0.00	7.71	0.43	1.66
34	Ix_AR2	ActiveIntronRegion	0	2.38	11.57	0.50	0.00	2.90	0.57	0.60	0.73	4.96	5.20	0.31	0.37	0.77	2.82	4.43	0.00	5.31	0.57	2.84	0.15	2.50	0.00	0.62	5.53	0.85	1.40	0.97	1.82	1.60
35	Ix_AR1	ActiveIntronRegion	0	0.75	3.00	0.00	0.00	0.00	0.37	0.54	0.00	1.14	2.61	0.67	1.71	1.75	2.60	5.53	0.97	6.31	0.99	0.91	1.12	0.96	0.00	0.98	2.99	0.39	0.44	0.25	1.62	0.99
36	Ix_SR1	SilentIntronRegion	0	1.83	3.06	0.06	0.58	0.67	0.14	1.07	0.34	4.45	1.60	0.30	1.16	0.78	3.69	7.65	0.85	5.02	0.47	2.65	2.98	1.72	0.23	0.12	1.20	2.25	1.30	0.21	1.34	0.67
37	E4_Aa	NovelBoundary	0	10.26	13.96	0.00	0.00	0.00	0.00	2.75	2.39	3.41	7.59	0.00	1.60	0.00	9.70	0.00	3.44	3.20	4.62	16.18	12.40	6.02	0.00	0.00	0.00	1.74	0.00	0.00	0.00	0.00
38	ER4a	ExonRegion	0	22.46	11.98	0.51	12.19	0.00	1.12	4.33	1.27	5.41	5.62	3.22	2.94	2.17	13.72	9.80	1.11	6.51	2.90	10.18	31.56	9.72	1.13	61.78	44.68	29.75	0.85	18.62	8.73	13.53
39	E4_Da	KnownBoundary	0	21.06	14.54	1.32	10.78	0.00	0.00	5.55	2.44	6.15	9.15	3.89	2.98	2.67	13.07	0.00	3.52	8.60	0.00	16.18	40.44	21.38	2.38	70.62	40.79	28.15	3.78	36.68	10.29	18.36
40	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER4b	ExonRegion	0	15.74	13.61	1.00	25.64	0.00	2.40	5.98	2.80	3.45	11.43	1.88	2.90	0.85	19.22	2.07	4.09	9.50	2.07	12.74	29.57	19.05	2.31	60.24	38.66	22.89	4.08	16.42	4.90	10.13
42	E4_Db	NovelBoundary	0	17.22	0.00	1.54	0.00	14.74	0.00	0.00	2.34	12.55	0.00	0.00	3.52	0.00	11.50	8.37	0.00	11.01	4.62	0.00	11.00	2.05	0.00	0.00	2.93	3.45	0.00	0.00	1.84	0.00
43	E4b_E5a	KnownJunction	0	0.00	22.78	0.00	18.12	0.00	0.00	0.00	0.00	6.21	5.79	5.88	0.00	2.90	5.34	15.75	0.00	3.15	0.00	8.09	22.16	16.81	0.00	50.09	39.30	25.72	0.00	25.10	2.29	8.62
44	Ix	Intron	0	5.83	5.50	0.00	0.59	2.41	0.57	1.83	0.46	1.43	3.45	0.10	1.57	0.64	6.47	1.74	3.27	6.76	2.38	3.42	2.72	1.53	0.45	0.15	1.42	1.88	0.91	0.00	1.21	0.11
45	Ix_SR1	SilentIntronRegion	0	5.85	5.52	0.00	0.59	2.42	0.57	1.83	0.46	1.43	3.45	0.10	1.58	0.64	6.49	1.74	3.28	6.79	2.39	3.43	2.73	1.53	0.45	0.15	1.42	1.89	0.91	0.00	1.21	0.11
46	E5_Aa	NovelBoundary	0	10.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.66	4.95	0.00	0.00	0.00	16.37	0.00	0.00	8.91	4.62	0.00	0.00	0.00	0.00	0.00	0.00	7.35	0.00	0.00	0.00	1.91
47	ER5a	ExonRegion	0	17.92	3.85	0.31	19.43	3.68	2.15	3.59	0.90	5.82	10.84	3.51	2.52	0.87	19.23	7.21	11.90	8.36	3.95	13.74	27.77	16.51	1.89	52.55	40.53	23.08	8.71	20.24	5.84	14.31
48	E5_Da	NovelBoundary	0	10.44	4.56	0.00	0.00	6.04	0.00	2.12	0.00	5.48	3.79	0.00	0.00	0.00	10.88	0.00	3.52	8.58	0.00	0.00	0.00	1.76	0.00	2.36	0.00	6.86	3.86	0.00	0.00	0.00
49	E5a_E6a	KnownJunction	0	5.19	0.00	0.00	20.49	0.00	1.76	2.92	2.54	4.26	1.56	2.85	1.84	0.00	6.20	8.37	11.25	0.83	4.62	16.18	14.56	11.59	2.33	49.15	35.23	11.02	7.98	8.25	4.22	6.47
50	Ix	Intron	0	6.05	4.26	0.28	0.40	2.76	0.16	1.25	0.10	0.66	3.59	0.07	0.87	0.84	3.68	2.49	1.04	3.28	0.80	4.15	3.64	3.14	0.10	0.10	1.21	1.77	1.77	0.21	1.56	0.15
51	Ix_SR1	SilentIntronRegion	0	6.07	4.27	0.28	0.40	2.76	0.16	1.26	0.10	0.67	3.60	0.07	0.87	0.84	3.69	2.50	1.04	3.29	0.80	4.16	3.66	3.15	0.10	0.10	1.22	1.78	1.78	0.21	1.57	0.15
52	E6_Aa	NovelBoundary	0	10.85	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	1.39	1.40	5.72	0.00	0.00	8.15	0.00	0.00	0.00	0.00	0.00	0.00	2.57	1.93	0.00	0.00	6.47	0.00
53	ER6a	ExonRegion	0	18.54	5.85	0.78	6.91	0.00	3.59	3.59	2.63	1.85	5.22	4.47	2.11	1.44	9.66	5.81	12.51	8.34	7.51	7.06	22.64	12.59	1.64	66.74	47.48	19.30	5.62	17.29	5.01	19.46
54	E6_Ab	KnownBoundary	0	20.17	3.68	0.00	0.00	0.00	8.59	10.24	2.44	0.00	13.78	4.84	1.63	1.56	10.83	24.72	17.29	13.96	14.64	16.18	26.46	13.80	1.99	70.33	50.48	18.07	6.18	26.09	0.00	15.12
55	ER6b	ExonRegion	0	10.45	4.57	0.00	24.44	0.76	3.03	7.25	0.40	3.11	5.06	4.52	2.58	0.53	12.99	6.24	9.67	8.67	6.05	6.47	22.06	9.75	3.06	49.28	41.91	17.03	10.74	17.43	4.77	13.35
56	E6_Da	KnownBoundary	0	7.49	9.11	0.00	41.41	0.00	3.64	5.78	0.00	1.16	5.23	8.07	1.17	0.00	8.82	0.00	10.10	8.42	4.62	16.18	20.59	7.62	1.94	49.35	36.79	13.15	3.18	22.21	12.00	11.13
57	ER6c	ExonRegion	0	5.25	6.52	0.00	16.39	1.36	4.54	4.31	0.19	1.49	3.15	1.03	3.51	1.39	7.03	16.21	5.83	7.14	4.19	8.02	22.04	11.08	0.70	19.39	23.56	9.45	2.12	11.48	2.05	12.60
58	E6_Db	KnownBoundary	0	5.54	4.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	1.50	4.50	32.29	0.00	6.30	0.00	8.09	16.21	12.11	0.00	5.02	5.26	3.52	0.00	9.84	0.00	0.00
59	ER6d	ExonRegion	0	5.62	5.24	0.19	4.38	3.52	1.68	0.78	1.23	1.65	5.26	1.25	2.80	1.21	7.57	7.93	2.16	4.21	1.50	4.64	12.33	5.75	0.40	9.25	11.08	8.40	3.05	8.34	2.26	2.70