Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC010522.1	Gene	0	18.91	45.59	18.11	16.04	24.49	30.34	16.43	14.35	10.02	46.46	90.85	38.21	27.65	21.53	15.95	18.06	45.84	24.59	19.47	5.23	22.56	5.98	26.83	17.93	24.67	20.78	31.65	22.93	13.90
2	376209	Transcript	0	21.55	37.53	17.35	20.74	31.74	32.10	27.85	17.46	11.00	50.36	73.01	33.12	29.96	17.14	10.99	25.87	41.57	26.23	33.11	9.10	25.51	10.63	28.29	16.52	22.58	18.37	24.16	27.20	16.82
3	442832	Transcript	0	2.05	6.66	0.69	1.01	2.15	3.06	2.45	2.72	3.09	6.55	6.03	4.20	3.33	1.61	9.36	0.64	3.50	2.35	0.91	0.90	3.20	0.44	3.28	2.05	1.96	5.51	2.59	3.18	0.67
4	ER1a	ExonRegion	0	33.48	18.62	25.63	38.57	68.00	25.62	55.97	22.01	11.36	53.74	47.93	41.28	23.10	15.90	15.45	31.31	49.11	31.75	34.06	12.05	20.49	17.94	40.61	12.50	17.86	28.05	18.48	43.42	21.82
5	E1_Da	NovelBoundary	0	0.00	0.00	1.25	7.98	0.00	1.46	0.00	0.00	1.43	0.00	1.39	4.55	4.81	2.39	9.37	0.00	1.24	0.00	0.00	0.00	3.61	2.38	2.07	0.00	1.93	3.86	0.00	2.16	0.00
6	E1a_E3a	KnownJunction	0	5.49	30.44	3.96	10.14	6.19	24.44	12.99	18.41	4.99	27.44	24.17	10.54	17.77	7.89	0.00	27.23	16.88	18.49	32.37	7.44	18.09	6.86	11.48	4.73	10.72	4.38	4.82	10.15	4.13
7	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	1.99	0.00	0.00	1.58	0.00	0.00	0.00	0.00	0.00	0.00	13.87	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	Ix	Intron	0	1.61	2.78	1.35	1.91	1.42	1.91	0.69	1.84	5.76	7.67	2.38	4.58	1.36	2.15	3.92	1.02	5.02	1.31	2.10	1.23	3.16	0.66	1.77	1.36	2.79	1.34	2.17	3.84	1.24
9	Ix_SR1	SilentIntronRegion	0	2.38	1.19	0.00	0.00	0.00	0.00	0.00	0.00	1.25	3.73	1.32	0.68	1.94	1.00	0.00	0.00	1.10	0.71	1.18	1.02	1.58	0.67	0.00	0.79	0.00	0.00	0.00	1.20	0.50
10	Ix_SR2	SilentIntronRegion	0	1.94	3.64	1.86	1.70	1.99	2.04	0.58	2.29	5.55	7.85	2.21	5.15	1.66	2.52	3.83	1.02	5.41	1.57	2.37	1.18	3.87	0.82	2.46	1.91	3.14	2.02	3.23	4.65	1.62
11	Ix_AR2	ActiveIntronRegion	0	1.49	1.16	0.68	3.88	0.88	3.25	0.73	1.29	9.61	9.35	4.50	7.32	1.59	2.65	4.25	1.76	7.23	1.41	1.15	1.75	2.84	0.00	1.96	0.93	4.30	0.26	1.46	5.14	1.14
12	Ix_AR3	ActiveIntronRegion	0	0.00	5.34	1.12	2.44	0.00	2.98	0.00	0.00	1.92	1.14	2.18	3.66	0.49	1.21	6.07	0.00	5.38	0.00	0.00	2.69	2.02	0.00	1.13	0.00	0.95	0.52	1.60	0.00	0.00
13	Ix_SR3	SilentIntronRegion	0	0.54	1.70	0.71	1.79	0.61	1.16	1.26	1.61	5.52	7.69	1.81	2.34	0.16	1.18	5.16	0.93	3.62	0.72	2.40	1.03	1.84	0.68	0.16	0.27	1.73	0.56	0.23	1.63	0.50
14	Ix	Intron	0	0.21	2.81	0.50	0.72	0.49	1.24	0.00	0.92	2.63	9.24	3.33	3.33	1.55	1.58	4.59	2.16	1.49	0.77	3.51	0.28	4.14	0.54	0.18	0.65	2.43	0.79	0.00	0.98	1.07
15	Ix_SR1	SilentIntronRegion	0	0.00	3.08	0.14	0.60	0.29	1.24	0.00	0.87	2.48	9.45	3.98	3.22	1.59	1.33	5.19	2.58	1.33	0.92	4.20	0.33	4.42	0.65	0.22	0.77	2.56	0.75	0.00	0.78	1.28
16	Ix_AR1	ActiveIntronRegion	0	1.33	1.40	2.41	1.34	1.52	1.26	0.00	1.21	3.49	8.28	0.00	3.95	1.36	2.93	1.50	0.00	2.33	0.00	0.00	0.00	2.70	0.00	0.00	0.00	1.78	0.98	0.00	2.03	0.00
17	E2_Aa	NovelBoundary	0	11.68	8.34	0.00	0.00	22.99	5.45	2.52	1.94	3.44	10.63	0.00	3.80	0.00	0.00	0.00	11.47	6.19	0.00	0.00	0.00	3.73	4.76	2.02	0.00	5.42	3.86	0.00	15.50	0.00
18	ER2a	ExonRegion	0	0.81	0.61	0.94	4.05	0.00	2.07	1.52	1.39	3.27	7.00	0.67	3.93	1.96	2.30	2.60	0.47	3.21	0.36	0.00	0.52	2.15	0.69	0.38	2.02	0.27	1.48	0.69	2.51	0.76
19	E2_Da	NovelBoundary	0	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	4.87	8.47	0.00	5.78	5.16	1.37	8.37	7.42	5.04	0.00	0.00	0.00	2.05	0.00	2.36	0.00	1.48	10.69	0.00	4.27	2.64
20	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	2.35	0.00	0.00	0.00	0.00	2.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.50	0.00
21	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	2.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER3a	ExonRegion	0	11.58	28.84	12.06	19.69	28.56	11.82	11.25	19.18	6.83	28.18	46.05	38.30	21.07	16.86	4.06	15.78	40.89	13.28	9.05	4.69	7.38	5.81	24.69	9.55	12.98	17.21	15.27	20.14	10.59
23	E3_Da	NovelBoundary	0	0.00	0.00	3.86	0.00	0.00	1.96	0.00	2.54	21.65	3.67	0.00	10.87	8.12	5.38	16.74	3.82	11.95	0.00	0.00	10.83	2.05	0.00	0.00	0.00	3.56	8.75	0.00	4.13	0.00
24	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	3.02	4.82	1.30	1.86	1.45	2.30	2.77	2.12	11.31	9.49	3.45	7.86	4.44	2.33	8.13	2.95	15.23	1.38	4.98	1.89	3.54	0.80	1.68	2.39	5.20	0.76	2.24	5.14	1.34
26	Ix_AR1	ActiveIntronRegion	0	2.27	5.39	0.75	0.00	2.04	0.00	0.97	3.47	10.31	6.46	3.48	2.73	5.60	1.92	8.22	3.86	10.68	2.26	2.63	2.70	2.68	0.25	1.38	2.87	4.05	0.00	0.00	4.37	0.00
27	Ix_SR1	SilentIntronRegion	0	3.10	4.77	1.36	2.05	1.39	2.52	2.95	1.99	11.43	9.80	3.45	8.37	4.34	2.38	8.13	2.86	15.70	1.30	5.22	1.81	3.63	0.86	1.71	2.35	5.32	0.83	2.47	5.23	1.47
28	ER4a	ExonRegion	0	20.48	62.28	22.08	16.20	23.74	38.29	13.84	16.90	9.89	53.10	119.06	46.56	31.07	28.36	19.16	21.46	56.83	31.44	19.98	4.43	26.69	4.89	30.78	20.94	31.29	24.45	41.60	24.23	13.78
29	E4_Da	KnownBoundary	0	37.87	95.11	26.11	0.00	7.37	42.63	16.13	28.62	18.85	69.31	179.59	56.23	42.23	32.06	15.95	7.65	69.80	51.63	64.74	4.13	59.88	0.00	34.28	36.91	45.31	22.10	59.34	41.47	26.87
30	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER4b	ExonRegion	0	25.68	63.52	22.46	13.52	21.02	46.25	14.58	11.95	16.64	69.90	146.92	47.54	49.02	27.64	17.53	19.07	58.72	28.46	32.91	7.79	37.95	7.11	32.78	32.35	39.15	22.69	49.17	28.04	24.51
32	E4_Db	NovelBoundary	1	66.77	141.06	44.22	93.83	52.61	80.50	23.57	41.85	95.65	142.09	196.26	105.72	88.11	53.62	82.72	54.70	144.67	27.74	129.48	37.30	62.77	10.74	56.98	156.36	102.74	82.61	37.82	108.19	63.52
33	Ix	Intron	0	13.89	65.72	15.43	8.92	22.78	28.00	11.49	13.74	14.58	49.17	88.34	31.20	40.26	18.59	17.58	9.98	47.04	25.89	27.15	5.53	31.86	6.36	25.96	41.93	31.05	20.30	43.38	26.03	17.43
34	Ix_AR1	ActiveIntronRegion	0	5.14	32.85	5.02	0.00	0.00	11.53	10.89	25.41	3.01	22.52	44.99	11.48	18.26	7.89	0.00	5.95	8.96	11.94	15.33	4.96	9.40	3.24	15.19	23.23	8.58	12.20	25.28	7.84	6.38
35	Ix_SR1	SilentIntronRegion	0	13.89	70.95	16.88	10.00	19.70	36.45	12.64	8.05	11.84	56.40	115.45	38.14	43.34	24.95	14.03	12.23	59.34	28.90	27.56	3.83	36.64	7.20	27.91	50.38	37.11	12.20	54.88	27.53	12.08
36	Ix_AR2	ActiveIntronRegion	0	15.88	72.14	18.57	10.14	18.75	24.31	10.91	15.56	17.92	46.10	84.15	35.82	42.98	15.50	19.29	9.41	50.98	26.82	28.96	6.84	34.75	7.49	26.00	43.50	31.73	27.43	42.17	30.58	20.68
37	Ix_SR2	SilentIntronRegion	0	13.98	57.72	10.89	8.50	49.24	26.91	10.77	15.83	18.78	54.38	63.53	16.84	39.17	17.58	29.96	8.62	32.31	24.75	28.42	6.54	27.07	3.74	27.34	30.63	28.40	25.63	31.50	22.23	26.94
38	E5_Aa	NovelBoundary	1	573.40	467.59	545.34	700.35	579.46	623.01	358.74	477.25	888.88	852.68	453.07	565.38	386.94	598.43	615.30	667.07	1473.82	89.13	56.20	397.37	735.95	319.12	538.10	629.32	556.76	981.75	613.12	978.25	529.64
39	ER5a	ExonRegion	0	7.39	26.01	1.83	0.00	8.59	10.16	8.27	9.48	9.10	17.44	23.43	10.51	11.35	4.14	34.83	2.09	8.68	9.03	3.64	3.07	10.64	1.06	12.72	6.16	7.56	20.56	9.66	6.69	1.93