Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF160	Gene	0	12.33	7.68	14.41	8.82	10.91	11.17	4.77	5.94	4.98	16.92	18.84	9.52	3.25	21.59	5.09	15.85	18.04	15.19	9.33	8.11	13.69	4.82	9.55	13.69	10.58	6.26	7.21	11.69	6.15
2	355147	Transcript	0	3.66	3.04	6.77	2.20	7.57	4.52	4.43	5.12	6.68	5.24	7.76	2.07	0.48	5.28	8.76	0.73	6.17	1.54	0.47	0.00	2.50	1.90	3.31	6.76	4.49	0.69	1.89	3.87	0.98
3	418871	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	429604	Transcript	0	14.49	10.17	5.15	0.00	4.60	13.40	8.82	8.79	5.15	40.94	19.60	5.05	8.00	16.50	15.63	36.99	28.47	29.58	5.90	5.37	14.24	8.95	17.79	9.95	18.77	9.16	3.66	19.86	8.90
5	270457	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.28	0.00	0.00	0.00	4.62	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	391777	Transcript	0	0.36	1.09	0.19	0.00	0.00	0.23	0.00	0.00	0.00	0.12	0.00	0.00	0.00	0.76	0.00	0.00	0.17	0.68	0.00	1.64	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	27.80	11.69	41.89	52.74	60.57	15.91	10.28	15.71	8.60	28.88	23.22	24.21	9.86	34.94	8.99	42.84	51.46	35.19	8.55	11.87	24.63	14.87	25.59	10.14	16.36	20.51	17.03	33.87	11.72
8	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	1.96	0.00	0.00	0.00	1.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	0	35.10	0.00	10.71	70.53	55.26	5.72	0.00	2.54	6.24	12.90	4.43	11.66	2.48	27.94	8.37	20.04	9.21	23.12	16.18	3.89	13.24	24.41	5.02	21.83	6.44	6.14	0.00	10.74	4.92
10	Ix_AR4	ActiveIntronRegion	0	0.00	0.00	2.02	0.00	0.00	1.70	0.00	0.00	3.37	2.89	1.19	0.00	0.00	0.00	0.00	0.00	3.25	2.73	1.81	0.00	4.17	0.00	0.72	6.71	3.26	1.89	3.08	2.61	0.00
11	Ix_AR3	ActiveIntronRegion	0	5.07	1.88	1.65	0.00	0.00	1.70	0.47	0.00	1.77	3.12	1.69	4.11	0.30	0.73	7.22	1.65	10.09	3.63	3.36	0.00	2.47	0.63	2.07	4.81	2.43	2.31	1.74	3.30	1.03
12	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2_Aa	NovelBoundary	0	0.00	4.17	0.00	0.00	0.00	1.92	0.00	0.00	0.00	6.07	0.00	1.87	0.00	0.00	0.00	3.82	3.69	0.00	0.00	0.00	4.09	0.00	0.00	5.32	5.34	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	60.40	27.49	7.80	18.54	16.84	25.27	6.24	26.32	10.53	34.08	21.45	13.99	16.41	57.78	12.33	58.33	27.75	61.54	18.53	27.50	28.75	23.14	20.19	19.03	29.25	16.39	5.28	19.06	12.30
15	E2_Da	NovelBoundary	0	5.78	4.07	0.00	0.00	7.22	1.76	5.61	9.21	4.26	11.22	0.00	7.98	1.18	6.60	0.00	16.22	8.10	4.62	8.09	0.00	11.83	2.29	6.45	5.38	3.83	7.98	0.00	6.20	3.14
16	E2a_E3a	KnownJunction	0	10.09	13.77	0.00	0.00	0.00	14.39	10.93	11.40	5.60	47.10	17.53	4.40	7.45	15.35	27.71	40.31	29.78	27.74	8.09	0.00	14.08	8.12	11.57	5.50	23.41	11.46	0.00	21.39	9.14
17	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.28	0.00	0.00	0.00	4.62	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2a_E4a	KnownJunction	0	8.02	4.85	8.12	32.35	0.00	8.52	13.27	11.69	9.47	34.75	27.02	20.72	12.32	27.92	8.37	49.80	25.91	23.12	16.18	27.46	9.55	0.00	33.00	12.44	11.67	3.95	2.53	30.60	17.43
19	Ix	Intron	0	3.06	1.54	1.59	0.00	6.98	1.97	0.96	0.88	0.80	2.06	1.13	1.18	0.00	2.16	7.43	3.55	9.24	8.26	6.09	2.63	5.44	0.00	2.59	2.05	1.36	0.75	3.49	9.32	0.95
20	Ix_AR1	ActiveIntronRegion	0	3.12	1.56	1.61	0.00	7.12	2.00	0.98	0.89	0.81	2.10	1.16	1.20	0.00	2.20	7.57	3.62	9.42	8.42	6.21	2.68	5.54	0.00	2.63	2.09	1.39	0.76	3.56	9.50	0.97
21	E3_Aa	NovelBoundary	0	8.26	3.97	5.93	10.78	6.78	1.69	2.63	2.54	0.00	11.06	1.61	9.40	0.00	16.79	14.95	10.86	19.38	9.25	0.00	8.27	5.41	0.00	1.97	10.53	0.00	5.36	0.00	6.16	1.65
22	ER3a	ExonRegion	0	18.90	6.57	10.30	0.00	9.21	12.41	6.72	6.19	4.70	34.78	21.67	5.70	8.54	17.65	3.56	33.67	27.17	31.43	3.70	10.73	14.39	9.78	24.00	14.41	14.12	6.86	7.33	18.33	8.66
23	E3_Ab	KnownBoundary	0	27.61	0.00	19.98	0.00	21.96	11.40	2.92	1.99	4.26	23.29	20.47	12.65	9.17	19.59	0.00	27.16	27.08	24.40	7.87	16.04	13.60	14.78	34.77	27.46	7.16	5.45	14.01	18.11	7.63
24	ER3b	ExonRegion	0	26.59	12.01	29.68	4.35	22.06	15.99	5.81	9.31	7.18	26.61	27.51	15.00	6.40	44.70	4.13	29.28	28.49	35.02	13.47	16.43	15.20	7.96	26.91	28.61	10.65	20.09	19.25	22.88	5.75
25	E3_Da	NovelBoundary	0	2.83	0.00	4.11	0.00	0.00	5.64	5.32	2.14	7.61	7.63	0.00	0.00	0.00	5.83	27.51	7.42	12.29	22.99	0.00	3.64	8.98	2.48	0.00	5.98	0.00	0.00	0.00	3.55	0.00
26	E3a_E4a	KnownJunction	0	40.05	21.52	44.52	0.00	20.04	13.70	10.01	29.66	15.56	29.52	35.05	18.22	1.69	49.94	8.17	13.16	32.37	41.61	24.28	19.43	29.00	20.76	39.50	30.80	24.40	22.44	0.00	22.87	7.66
27	Ix	Intron	0	8.81	3.43	2.10	2.16	2.08	3.17	1.11	1.85	2.48	5.93	1.97	2.42	0.60	4.73	3.34	6.24	11.97	9.16	4.40	1.43	7.04	0.59	0.82	6.85	3.26	1.97	0.32	3.23	2.06
28	Ix_AR6	ActiveIntronRegion	0	7.61	1.40	0.27	3.05	0.00	0.00	0.00	0.78	0.14	1.60	0.62	0.00	0.00	2.71	6.25	2.99	1.12	4.50	4.07	2.34	1.57	0.00	0.00	7.98	1.21	0.28	0.00	0.69	0.04
29	Ix_SR3	SilentIntronRegion	0	11.17	2.02	2.27	2.74	4.29	4.86	1.99	2.89	2.45	7.37	2.19	2.10	0.29	6.43	4.01	5.90	13.65	12.06	3.51	1.25	6.47	1.19	1.08	8.48	3.79	1.27	0.24	4.06	1.45
30	Ix_AR5	ActiveIntronRegion	0	9.19	2.69	2.77	6.72	1.55	3.44	1.14	3.87	3.53	7.60	0.00	3.00	0.77	5.10	2.44	7.72	12.03	14.78	3.04	0.51	5.06	1.71	0.34	5.71	5.60	1.67	1.06	2.81	3.28
31	Ix_AR4	ActiveIntronRegion	0	6.15	5.24	1.87	4.09	1.83	3.56	0.15	2.80	1.61	6.09	0.88	2.18	0.78	3.71	1.73	6.08	11.39	9.01	7.19	0.00	8.50	0.00	0.68	4.82	2.93	5.82	0.69	2.95	7.67
32	Ix_AR3	ActiveIntronRegion	0	0.00	12.44	0.00	0.00	0.00	0.29	0.00	0.00	0.00	3.09	0.00	2.65	2.60	2.85	0.00	0.00	5.22	2.73	0.00	0.00	4.79	0.00	0.00	3.23	0.00	3.03	0.00	0.00	0.00
33	Ix_SR2	SilentIntronRegion	0	7.64	6.79	1.94	2.17	1.48	2.48	1.22	1.39	1.53	5.81	2.95	1.96	1.32	3.11	3.57	4.67	14.92	4.88	3.14	0.83	8.90	0.00	0.99	6.76	2.78	2.87	0.00	3.78	2.81
34	Ix_AR2	ActiveIntronRegion	0	6.85	2.20	2.36	0.00	2.66	3.37	0.27	0.75	3.51	7.65	3.19	3.51	0.65	4.80	2.28	11.90	18.32	11.39	6.75	3.76	11.84	0.00	1.33	7.28	4.12	2.02	0.00	5.04	1.30
35	Ix_AR1	ActiveIntronRegion	0	14.31	2.82	3.41	0.00	0.91	3.82	1.87	1.02	4.47	5.09	1.77	3.66	0.48	7.05	4.44	4.34	8.31	7.62	4.15	1.02	5.56	1.34	0.34	6.78	3.18	0.58	1.02	1.81	1.86
36	Ix	Intron	0	5.41	6.05	1.69	0.00	0.00	2.78	3.05	1.86	2.27	3.65	1.20	4.67	0.00	2.75	9.76	12.73	6.03	5.03	4.84	0.00	7.92	0.91	0.00	9.78	5.77	0.00	0.00	3.29	1.69
37	Ix_AR1	ActiveIntronRegion	0	5.52	6.17	1.72	0.00	0.00	2.83	3.12	1.90	2.32	3.72	1.23	4.76	0.00	2.80	9.90	12.99	6.14	5.13	4.94	0.00	8.07	0.93	0.00	9.95	5.89	0.00	0.00	3.34	1.72
38	E4_Aa	NovelBoundary	0	32.09	9.70	5.86	0.00	13.56	3.38	5.26	2.54	4.08	7.47	8.16	6.84	2.90	13.03	0.00	10.56	24.83	13.87	0.00	3.89	17.45	4.04	2.02	13.88	13.94	5.88	0.00	7.95	0.00
39	ER4a	ExonRegion	0	52.52	30.22	67.49	35.95	48.99	36.86	21.90	32.19	20.82	78.61	79.88	45.66	14.05	111.40	24.64	72.63	73.39	73.05	49.18	46.10	45.05	33.32	67.54	67.51	41.43	30.07	28.94	66.89	20.62
40	E4_Da	NovelBoundary	0	15.93	8.63	3.69	0.00	0.00	3.76	2.63	0.00	0.00	4.87	1.39	13.67	1.62	1.09	0.00	3.82	13.33	13.87	16.18	7.11	13.40	2.38	2.51	2.75	5.11	0.00	0.00	10.74	0.00
41	E4a_E6a	KnownJunction	0	37.69	52.93	74.37	34.94	48.34	30.46	26.89	41.21	16.23	65.47	83.23	50.00	5.80	118.96	44.45	65.41	91.30	70.12	24.28	35.48	54.27	29.85	46.00	73.33	52.21	17.51	60.73	73.19	16.47
42	Ix	Intron	0	12.42	5.06	2.81	0.68	1.48	4.77	1.71	2.19	3.65	6.10	4.29	4.80	1.25	5.98	3.86	5.22	12.29	9.56	7.30	2.35	9.29	1.53	0.44	10.39	4.56	2.28	0.90	4.12	2.85
43	Ix_AR2	ActiveIntronRegion	0	18.38	6.51	4.38	0.96	2.17	6.41	1.97	3.19	4.06	7.83	5.82	5.26	2.07	7.80	5.60	6.98	16.71	10.94	8.94	3.43	8.94	2.80	0.64	12.71	6.10	3.70	0.65	4.34	3.21
44	Ix_SR2	SilentIntronRegion	0	6.45	3.77	1.64	0.00	0.34	3.65	1.83	1.29	1.45	4.24	2.66	3.62	0.91	3.29	1.80	1.86	5.01	5.53	7.82	0.96	8.78	0.76	0.38	6.47	2.59	0.77	1.28	2.28	2.48
45	Ix_AR1	ActiveIntronRegion	0	8.06	3.73	1.58	0.92	1.89	3.23	0.78	2.33	5.25	3.72	3.61	4.65	0.58	6.23	4.00	5.12	13.68	13.12	3.29	2.74	7.34	0.70	0.23	9.16	3.80	0.69	0.00	6.17	2.01
46	Ix_SR1	SilentIntronRegion	0	10.68	4.61	1.73	0.85	1.16	3.73	1.68	0.91	4.83	6.88	3.61	5.70	0.23	5.44	2.55	6.33	11.54	9.44	5.71	1.46	12.93	0.21	0.22	12.03	4.49	2.54	1.75	4.78	3.31
47	ER5a	ExonRegion	0	0.36	1.09	0.19	0.00	0.00	0.23	0.00	0.00	0.00	0.12	0.00	0.00	0.00	0.76	0.00	0.00	0.17	0.68	0.00	1.64	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00
48	Ix	Intron	0	11.37	5.26	1.36	5.85	0.00	5.61	1.64	2.25	5.49	7.07	5.83	7.55	0.79	5.35	0.00	6.07	10.35	8.65	6.52	5.31	5.82	0.00	0.00	14.92	6.41	0.64	2.99	3.99	2.73
49	Ix_SR1	SilentIntronRegion	0	11.55	5.34	1.39	5.95	0.00	5.70	1.64	2.29	5.58	7.18	5.92	7.65	0.80	5.42	0.00	6.17	10.49	8.79	6.62	5.37	5.91	0.00	0.00	15.15	6.51	0.65	3.04	4.06	2.76
50	E6_Aa	NovelBoundary	0	25.95	7.37	2.42	0.00	5.75	0.00	2.92	0.00	21.56	7.99	1.61	3.67	0.00	9.64	8.37	10.33	20.33	18.49	16.18	2.98	18.01	0.00	0.00	8.79	17.24	0.00	3.68	4.58	3.53
51	ER6a	ExonRegion	0	82.45	46.87	88.33	44.34	79.51	51.08	25.55	38.72	27.24	90.56	98.09	57.71	12.90	162.48	28.80	99.10	112.42	87.40	58.62	66.06	66.44	32.18	50.56	108.86	67.30	31.80	39.20	65.15	34.59
52	E6a_E7a	KnownJunction	0	98.80	81.63	73.05	71.18	49.96	71.40	33.99	26.23	59.14	120.56	157.13	81.56	16.75	176.54	33.69	111.76	142.53	110.96	48.55	53.75	96.06	40.64	76.04	134.70	63.12	36.65	31.36	57.56	41.56
53	E6a_E9a	NovelJunction	0	3.01	0.00	1.27	0.00	0.00	3.15	0.00	0.00	0.00	0.00	0.00	1.39	0.00	1.06	0.00	0.00	1.01	4.62	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	2.20	0.00
54	Ix_AR1	ActiveIntronRegion	0	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.59	0.00	0.23	0.00	2.72	0.48	0.00	0.00	2.07	0.00	0.00	0.00	0.00	0.00	0.00	3.44	0.00	0.00	2.89	0.00	0.00
55	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.73	0.00	0.00	0.00	0.00	0.00	2.92	0.63	1.56	0.00	0.00	0.00	2.39	0.00	0.00	0.84	0.00	0.00	0.62	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00
56	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	5.49	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER7a	ExonRegion	0	102.31	61.06	80.38	60.43	47.58	97.71	39.00	51.89	43.20	141.48	156.31	72.37	18.90	198.33	42.59	116.90	132.93	114.31	75.22	68.76	125.05	37.87	72.50	140.79	95.21	43.52	45.29	73.29	51.12
58	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	4.23	2.04	7.72	0.00	0.00	0.00	0.00	3.75	7.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
59	E7a_E8a	KnownJunction	0	4.54	4.46	7.80	0.00	14.30	5.68	5.15	4.58	6.85	4.95	11.01	1.81	0.00	7.02	8.17	0.00	7.68	0.00	0.00	0.00	1.76	2.09	4.63	10.53	6.86	0.00	0.00	5.39	1.78
60	E7a_E9a	KnownJunction	0	88.83	57.98	95.32	19.41	47.45	60.20	46.06	23.09	33.47	111.29	110.82	61.72	21.62	148.36	33.09	129.28	157.32	65.37	96.44	49.70	128.91	21.15	59.35	112.81	58.76	60.59	47.76	67.22	53.55
61	Ix_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	Ix_AR1	ActiveIntronRegion	0	1.52	1.45	0.00	0.00	0.00	0.61	0.00	1.66	1.14	3.33	0.43	2.04	0.29	0.61	7.29	1.18	2.54	0.43	2.36	0.00	1.34	0.00	0.41	1.64	0.32	0.35	0.41	1.12	0.00
63	Ix_SR1	SilentIntronRegion	0	2.01	0.00	0.00	0.00	0.00	0.06	0.00	0.00	0.62	1.20	0.51	0.89	0.00	0.00	3.81	2.42	2.39	0.00	5.97	0.00	2.82	0.00	0.00	1.46	0.00	0.00	0.00	3.47	0.00
64	E8_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	1.60	1.33	3.31	0.00	3.21	0.00	7.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.10	3.60	1.80	0.00	0.00	0.00
65	ER8a	ExonRegion	0	2.78	1.61	5.74	4.40	0.84	3.35	3.72	5.66	6.51	5.53	4.51	2.33	0.95	3.54	9.36	1.46	4.66	3.08	0.94	0.00	3.23	1.72	2.00	2.98	2.13	1.39	3.78	2.35	0.18
66	E8_Da	NovelBoundary	0	5.37	4.46	1.22	0.00	7.37	11.32	2.35	8.01	3.50	11.66	1.20	4.85	1.78	2.75	24.52	3.82	5.74	0.00	0.00	0.00	1.97	2.29	0.00	0.00	5.27	2.19	0.00	17.61	1.98
67	Ix_AR1	ActiveIntronRegion	0	1.22	3.69	0.48	4.11	1.40	0.00	1.44	2.11	0.80	0.22	2.24	1.67	0.00	1.26	7.61	0.00	1.11	1.10	1.22	0.00	0.00	0.52	0.52	1.51	0.71	0.90	0.00	0.00	0.41
68	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	1.02	0.00	3.82	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER9a	ExonRegion	0	4.33	3.63	7.65	3.46	4.42	6.04	2.29	1.77	2.19	8.20	10.47	4.52	1.57	7.93	2.12	6.47	8.37	6.25	4.84	2.90	7.05	1.39	3.81	5.24	4.81	2.69	3.89	5.71	3.22