Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BBC3	Gene	0	53.12	25.38	104.77	11.87	9.99	43.64	17.62	33.75	33.33	14.76	7.97	12.65	49.97	18.85	19.83	49.89	16.42	147.76	9.25	56.17	18.54	27.83	51.77	27.65	16.98	40.10	21.63	4.56	24.01
2	449228	Transcript	0	0.00	4.85	0.00	0.00	0.00	4.99	2.92	0.00	2.86	0.00	0.00	0.00	0.00	3.26	0.00	0.00	2.09	0.00	0.00	0.00	2.05	6.86	1.97	2.87	3.41	5.92	2.39	0.00	1.45
3	300880	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	341983	Transcript	0	0.00	0.00	3.74	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	2.39	9.25	0.00	0.00	0.00	2.19	0.00	0.00	0.00	4.03	2.24	0.00	0.00
5	359924	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	439096	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	1.30	0.91	0.00	0.00	1.00	5.46	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	1.83	0.00	2.01
7	IG21_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
8	IG21_AR1	ActiveIntergenicRegion	0	10.01	0.00	1.20	0.00	0.88	1.97	0.36	0.00	1.31	0.00	0.43	0.88	0.00	0.00	1.66	6.18	3.75	2.48	0.57	1.35	0.26	0.32	0.00	0.39	0.00	0.85	0.00	0.00	2.28
9	ER1a	ExonRegion	0	1.70	8.21	11.32	0.00	0.00	8.01	1.02	0.00	6.30	1.77	1.93	1.02	2.28	4.18	1.11	4.02	2.63	8.97	0.65	0.56	1.58	3.84	1.41	3.65	1.89	10.92	3.95	0.00	2.92
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05
11	E1a_E3a	KnownJunction	0	0.00	4.85	0.00	0.00	0.00	4.99	2.92	0.00	2.86	0.00	0.00	0.00	0.00	3.26	0.00	0.00	2.09	0.00	0.00	0.00	2.05	6.86	1.97	2.87	3.41	5.92	2.39	0.00	1.45
12	E1a_E4a	KnownJunction	0	0.00	0.00	3.74	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	2.39	9.25	0.00	0.00	0.00	2.19	0.00	0.00	0.00	4.03	2.24	0.00	0.00
13	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2_Aa	NovelBoundary	0	3.01	0.00	2.94	0.00	0.00	5.29	5.38	7.42	8.80	0.00	0.00	1.48	1.56	5.41	27.11	14.99	1.17	9.25	0.00	2.98	2.05	9.53	0.00	0.00	0.00	10.73	0.00	6.34	3.47
15	ER2a	ExonRegion	0	17.28	2.74	2.54	1.37	1.01	9.22	6.83	5.56	2.95	0.81	0.00	0.64	3.82	4.38	4.76	29.85	4.44	46.12	4.61	5.75	1.93	9.63	10.63	4.08	0.69	7.74	1.05	0.31	3.63
16	E2_Da	NovelBoundary	0	2.71	0.00	2.22	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	0	14.10	12.80	0.00	0.00	5.89	7.40	2.75	6.97	2.68	0.00	0.00	1.39	4.84	3.77	7.57	24.63	4.03	13.87	8.09	0.00	1.48	12.06	8.37	5.62	1.93	18.75	0.00	0.00	4.82
18	E2a_E4a	NovelJunction	0	5.07	3.88	16.05	0.00	0.00	7.52	7.95	7.12	12.36	3.99	1.27	5.42	15.16	3.28	0.00	12.47	6.01	70.12	0.00	26.71	10.95	0.00	29.75	2.99	5.04	28.45	11.48	3.86	12.15
19	E2a_E5a	NovelJunction	0	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.26	0.00	0.00	0.92	9.25	0.00	0.00	0.00	0.00	2.51	2.69	0.00	0.00	0.00	0.00	0.00
20	I2	Intron	0	9.65	0.96	5.25	1.69	0.00	4.64	0.26	1.88	2.03	0.34	0.28	1.29	1.61	1.66	1.40	4.82	3.40	14.62	1.17	1.83	0.97	0.24	1.75	0.90	1.05	3.25	1.06	0.60	0.96
21	I2_AR1	ActiveIntronRegion	0	10.04	1.97	6.99	3.96	0.00	5.33	0.00	3.70	3.23	0.63	0.66	0.71	0.93	2.61	1.27	2.50	4.22	16.76	3.53	3.02	1.09	0.56	2.31	1.78	1.07	6.95	1.05	1.56	1.67
22	I2_SR2	SilentIntronRegion	0	15.95	1.33	7.39	2.94	0.00	7.45	0.33	2.57	3.50	0.69	0.49	2.96	3.23	2.72	3.17	8.17	6.53	20.79	0.79	1.31	1.64	0.26	3.11	0.88	1.60	2.71	2.09	0.67	1.27
23	E3_Aa	NovelBoundary	0	11.50	0.00	0.00	0.00	0.00	4.60	0.00	0.00	1.46	0.00	0.00	1.54	1.37	1.95	0.00	6.88	1.28	0.00	0.00	0.00	0.00	7.44	0.00	0.00	1.74	0.00	2.34	0.00	0.00
24	ER3a	ExonRegion	0	12.34	10.34	20.82	5.06	1.91	13.25	5.57	5.82	4.58	4.27	1.01	2.97	7.45	5.89	5.02	28.99	6.91	38.97	3.66	10.11	6.11	9.88	15.88	4.54	3.84	16.49	3.07	1.75	9.21
25	E3a_E4a	KnownJunction	0	27.37	12.31	52.47	0.00	6.78	28.89	10.24	2.54	5.73	6.87	1.27	4.76	29.71	10.06	16.94	24.48	2.16	69.35	0.00	42.76	3.77	8.75	23.34	5.32	6.86	26.26	7.01	6.78	17.76
26	I3	Intron	0	9.37	0.13	4.21	0.89	1.21	4.87	0.33	1.67	2.82	1.01	0.20	0.71	1.92	1.38	1.40	3.47	3.08	11.60	0.79	1.02	1.88	0.89	0.67	2.48	1.59	1.04	0.38	0.74	1.08
27	I3_SR1	SilentIntronRegion	0	8.73	0.00	3.55	1.20	0.82	3.91	0.00	1.23	2.38	0.89	0.13	0.69	1.12	0.91	0.77	3.07	2.50	10.10	0.89	0.31	1.11	0.20	0.40	2.52	1.20	0.70	0.10	0.55	1.12
28	I3_AR1	ActiveIntronRegion	0	11.20	0.51	6.09	0.00	2.32	7.62	1.28	2.92	4.09	1.37	0.38	0.78	4.21	2.72	3.18	4.61	4.73	15.86	0.51	3.06	4.07	2.86	1.43	2.38	2.72	1.99	1.16	1.29	0.95
29	E4_Aa	NovelBoundary	0	23.24	0.00	9.04	0.00	6.78	5.06	5.72	9.31	2.80	0.00	0.00	0.00	8.79	3.46	8.37	3.82	1.13	23.12	0.00	4.13	2.05	0.00	0.00	5.92	5.53	1.93	2.53	8.58	1.95
30	ER4a	ExonRegion	0	58.08	16.41	146.37	9.23	7.17	40.69	17.97	29.27	16.55	15.08	6.85	14.46	57.16	22.56	17.33	42.12	18.99	170.95	5.83	67.41	17.82	27.23	49.96	20.79	15.80	39.26	16.62	3.82	23.11
31	E4_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	3.45	0.00	5.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00
32	E4a_E5a	KnownJunction	0	85.23	36.16	202.86	9.06	18.57	69.83	18.82	47.63	49.27	24.65	14.77	30.30	121.90	38.88	15.35	111.46	38.36	276.90	0.00	126.78	33.17	34.96	94.41	40.32	34.66	67.16	28.58	11.91	48.63
33	I4	Intron	0	7.99	2.09	4.16	0.41	0.41	5.75	0.68	1.25	2.28	0.78	0.91	0.68	0.60	2.65	1.43	3.87	3.80	9.67	0.72	2.16	1.81	0.66	0.51	1.82	1.41	1.33	0.41	0.41	0.72
34	I4_SR1	SilentIntronRegion	0	7.18	1.89	3.99	0.30	0.20	6.68	0.68	0.85	2.27	0.66	1.10	0.77	0.73	2.58	1.92	4.59	3.13	9.52	0.67	2.39	1.97	0.83	0.53	1.80	1.62	1.25	0.38	0.07	0.92
35	I4_AR1	ActiveIntronRegion	0	9.72	2.53	4.52	0.63	0.85	3.84	0.70	2.09	2.30	1.01	0.52	0.48	0.34	2.80	0.40	2.38	5.21	10.02	0.84	1.68	1.49	0.31	0.47	1.88	1.00	1.51	0.48	1.14	0.29
36	E5_Aa	NovelBoundary	0	13.92	9.31	7.08	0.00	0.00	3.49	0.00	2.54	4.51	0.00	0.00	0.00	0.00	5.36	0.00	3.14	3.71	13.87	0.00	0.00	2.05	0.00	0.00	2.99	3.56	1.59	0.00	0.00	0.00
37	ER5a	ExonRegion	0	83.89	40.53	166.65	19.45	17.15	69.00	27.28	56.73	57.66	23.93	13.37	20.56	82.44	28.62	32.26	72.48	24.67	229.92	14.48	91.75	30.01	42.77	83.44	46.37	28.19	61.29	36.56	7.54	38.01
38	ER5b	ExonRegion	0	1.43	0.00	1.50	12.19	0.00	3.21	0.00	1.84	4.12	4.33	0.00	2.47	1.73	3.33	0.00	0.00	1.00	9.10	4.53	5.62	0.00	1.20	7.84	4.30	0.00	0.00	12.21	3.26	2.68
39	ER5c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	1.30	0.91	0.00	0.00	1.00	5.46	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	1.83	0.00	2.01
40	IG20_AR1	ActiveIntergenicRegion	0	19.73	35.38	7.68	32.93	5.62	29.50	20.87	19.06	59.52	33.77	24.23	48.00	52.99	17.09	15.50	14.75	12.87	27.30	49.61	10.11	38.47	13.13	35.00	23.08	16.18	22.00	60.01	17.56	21.41