Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF224	Gene	0	62.28	68.91	37.49	62.12	55.25	71.42	41.35	43.07	51.21	88.33	69.68	62.14	30.07	107.98	53.44	106.20	169.98	42.44	65.54	53.66	52.16	19.98	19.04	66.92	52.35	27.83	49.36	48.04	29.26
2	336976	Transcript	0	41.24	47.77	28.59	51.40	34.68	41.62	33.91	29.15	32.61	56.82	51.99	48.08	19.99	79.44	27.26	84.99	126.33	29.59	41.62	39.49	34.68	13.62	15.70	38.14	31.42	24.91	14.67	37.90	18.00
3	ER1a	ExonRegion	0	24.88	13.71	21.46	35.30	44.08	23.32	21.27	10.89	11.23	23.07	21.88	20.53	12.67	34.97	6.72	56.37	74.50	18.09	12.27	20.43	16.82	13.18	8.90	9.17	16.92	26.23	8.25	37.11	20.70
4	E1_Da	NovelBoundary	0	17.05	12.41	19.68	30.20	6.19	12.62	2.46	11.05	8.28	22.85	24.04	23.95	12.32	19.48	7.97	47.35	46.77	9.25	0.00	10.09	13.68	2.48	6.25	5.44	16.37	15.71	6.26	8.09	2.71
5	E1a_E2a	KnownJunction	0	2.30	9.70	8.20	0.00	6.48	3.57	0.00	5.08	4.57	5.75	1.20	4.01	0.00	11.54	0.00	6.88	4.28	4.62	0.00	3.72	2.05	2.09	0.00	0.00	0.00	3.52	2.04	9.48	6.73
6	Ix	Intron	0	15.55	10.70	4.50	3.28	5.70	10.54	4.81	4.20	7.91	9.82	3.50	5.48	0.85	14.60	6.67	21.94	30.30	14.18	13.13	5.93	7.75	1.01	0.73	5.24	6.02	3.35	0.56	7.11	1.66
7	Ix_AR1	ActiveIntronRegion	0	18.06	11.49	4.95	4.16	5.65	8.67	4.80	5.09	8.51	10.03	3.37	5.87	1.08	17.32	6.20	22.78	33.79	14.70	11.51	6.46	7.16	1.28	0.93	5.81	6.62	4.14	0.35	8.60	1.76
8	Ix_SR1	SilentIntronRegion	0	12.15	5.21	0.00	0.00	3.95	3.34	8.16	1.49	3.64	3.51	2.89	2.00	0.00	4.41	0.00	8.03	0.00	4.68	18.10	4.46	8.08	0.00	0.00	1.74	4.63	0.00	4.45	1.32	1.09
9	Ix_AR2	ActiveIntronRegion	0	3.72	8.94	4.06	0.00	6.78	23.85	3.50	0.64	6.60	11.52	4.54	4.93	0.00	4.54	12.12	23.62	24.86	15.60	19.95	3.82	10.89	0.00	0.00	3.73	3.47	0.55	0.00	1.70	1.39
10	E2_Aa	NovelBoundary	0	24.30	31.31	10.12	32.14	0.00	22.52	5.38	2.19	25.88	18.34	14.24	18.79	0.00	34.12	8.17	38.25	89.56	27.74	32.37	17.28	10.27	11.52	2.27	8.02	16.56	0.00	0.00	14.11	6.83
11	ER2a	ExonRegion	0	43.57	28.01	9.54	8.87	4.53	59.11	22.04	30.76	25.56	39.26	29.74	32.62	11.08	64.93	26.43	69.38	76.99	27.38	36.56	42.48	42.15	14.32	6.54	30.26	23.19	39.26	5.08	26.45	15.89
12	E2_Da	NovelBoundary	0	13.57	0.00	0.00	0.00	0.00	0.00	2.86	0.00	4.48	0.00	3.23	1.20	0.00	8.09	0.00	0.00	11.21	4.62	8.09	7.11	9.31	0.00	0.00	3.05	1.93	0.00	0.00	1.93	0.00
13	E2a_E3a	KnownJunction	0	43.83	48.48	21.80	30.84	11.20	66.72	65.63	25.83	30.36	81.77	46.85	65.12	19.52	75.29	48.83	133.18	160.11	18.37	64.74	39.61	34.98	19.54	15.86	21.59	32.69	23.56	10.49	33.83	16.01
14	Ix	Intron	0	5.41	2.82	0.32	2.79	2.85	4.01	0.39	0.18	2.94	3.51	2.66	1.20	0.69	5.49	0.53	3.00	9.42	3.56	7.76	1.26	6.23	0.00	0.00	2.29	1.81	0.15	0.00	1.43	0.52
15	Ix_SR1	SilentIntronRegion	0	5.97	3.23	0.37	3.19	3.26	4.59	0.45	0.21	3.37	3.70	3.05	1.37	0.79	6.19	0.61	3.16	10.80	3.65	8.89	1.45	7.14	0.00	0.00	2.63	2.07	0.18	0.00	1.45	0.59
16	Ix_AR1	ActiveIntronRegion	0	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.71	0.00	1.95	0.00	3.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00
17	E3_Aa	NovelBoundary	0	0.00	3.59	5.53	0.00	6.78	8.79	7.21	0.00	2.86	3.75	4.02	8.73	1.97	13.94	0.00	3.37	16.07	4.62	16.18	0.00	8.98	0.00	0.00	8.85	0.00	6.05	2.04	0.00	1.65
18	ER3a	ExonRegion	0	38.58	48.40	22.59	33.74	21.85	36.49	57.22	35.14	30.24	73.32	74.23	59.47	27.06	77.25	21.59	98.55	158.83	26.80	72.85	37.93	46.78	14.05	25.49	23.56	36.85	35.48	33.78	47.00	22.38
19	E3_Da	NovelBoundary	0	2.60	8.34	1.15	0.00	0.00	0.00	2.57	0.00	0.00	0.00	4.21	1.42	0.00	4.30	23.92	3.37	1.40	0.00	8.09	0.00	9.31	0.00	4.43	5.74	0.00	0.00	0.00	2.20	0.00
20	E3a_E4a	KnownJunction	0	32.74	64.86	42.26	27.82	28.74	35.45	38.39	30.85	48.57	29.64	54.76	58.67	12.07	73.72	8.37	81.09	159.77	41.61	32.37	33.58	34.33	8.61	18.57	39.60	29.82	17.08	20.53	70.32	11.36
21	Ix	Intron	0	4.20	4.87	1.01	3.12	2.13	3.66	1.12	0.53	4.76	4.26	2.94	2.64	0.31	5.33	3.51	4.82	7.33	3.19	5.64	1.67	3.90	0.26	0.52	2.03	1.21	1.14	0.31	2.80	0.86
22	Ix_SR1	SilentIntronRegion	0	3.45	6.74	0.98	2.62	2.14	2.01	0.00	0.40	4.43	2.01	3.92	2.30	0.00	4.23	2.83	3.89	6.22	3.03	6.08	1.01	4.28	0.00	0.53	2.20	0.21	1.03	0.40	2.27	0.39
23	Ix_AR1	ActiveIntronRegion	0	3.63	3.55	0.79	2.02	1.84	3.10	1.71	0.17	3.48	3.13	1.34	2.32	0.67	4.64	2.42	2.80	4.07	1.81	4.81	3.11	2.28	0.17	0.85	1.42	1.61	2.07	0.69	3.37	0.38
24	Ix_SR2	SilentIntronRegion	0	3.50	1.14	0.00	3.55	1.73	4.30	0.97	0.65	4.43	2.61	3.02	0.98	0.00	2.54	3.89	3.41	4.29	2.18	2.51	3.01	3.86	0.64	0.64	0.76	1.30	0.00	0.00	0.58	0.00
25	Ix_AR2	ActiveIntronRegion	0	4.67	5.44	1.11	3.05	2.15	4.82	2.16	0.24	5.13	6.60	3.35	3.68	0.17	6.53	3.41	8.11	7.71	4.04	8.10	1.07	5.46	0.24	0.06	2.52	1.60	0.75	0.00	1.23	0.58
26	Ix_SR3	SilentIntronRegion	0	6.47	4.10	1.77	5.84	2.71	6.39	1.39	1.67	7.26	8.82	2.99	3.40	0.68	8.56	6.66	6.87	15.76	5.23	4.67	0.83	3.98	0.82	0.48	2.65	2.16	0.81	0.00	5.74	3.27
27	E4_Aa	NovelBoundary	0	5.60	0.00	1.07	20.71	6.93	5.49	0.00	4.03	12.58	2.00	0.00	0.00	1.56	6.40	36.48	11.09	11.25	0.00	0.00	0.00	5.50	0.00	0.00	2.81	2.88	0.00	0.00	0.00	1.68
28	ER4a	ExonRegion	0	47.95	32.38	48.81	62.01	58.95	32.07	32.89	37.68	33.46	48.62	61.06	50.33	22.51	80.06	28.80	63.21	142.58	31.98	25.09	44.17	29.47	8.96	13.94	38.20	25.30	21.58	6.78	44.19	10.82
29	E4_Da	NovelBoundary	0	2.54	0.00	1.35	10.78	0.00	1.96	2.35	0.00	2.95	3.67	1.58	4.46	0.00	5.83	0.00	14.38	6.46	0.00	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E4a_E5a	KnownJunction	0	43.06	24.63	37.77	95.77	41.71	32.11	30.27	44.24	30.79	72.10	64.03	60.72	25.76	90.58	28.30	108.09	119.66	27.74	32.37	37.21	40.15	20.32	20.44	53.77	24.89	28.11	0.00	19.64	12.78
31	Ix	Intron	0	8.53	2.40	0.00	3.57	3.65	6.84	0.50	0.00	2.65	3.95	0.89	3.99	0.80	4.27	3.88	4.77	9.66	2.96	8.74	0.69	2.48	0.00	0.45	1.07	0.36	0.39	0.00	1.62	0.00
32	Ix_AR1	ActiveIntronRegion	0	9.53	2.75	0.00	4.57	4.64	7.96	0.64	0.00	2.86	4.20	0.94	4.58	1.03	4.65	4.97	6.04	10.66	3.14	10.07	0.88	2.97	0.00	0.58	1.37	0.29	0.50	0.00	1.26	0.00
33	Ix_SR1	SilentIntronRegion	0	5.23	1.22	0.00	0.00	0.00	3.01	0.00	0.00	1.99	3.19	0.75	1.96	0.00	3.02	0.00	0.24	6.36	2.41	4.21	0.00	0.80	0.00	0.00	0.00	0.63	0.00	0.00	3.03	0.00
34	E5_Aa	NovelBoundary	0	5.37	0.00	4.98	0.00	12.08	10.24	0.00	4.43	3.81	7.07	1.61	6.08	1.21	9.11	0.00	0.00	25.21	0.00	16.18	4.13	7.26	0.00	2.12	3.05	0.00	0.00	0.00	9.80	2.05
35	ER5a	ExonRegion	0	59.00	89.22	28.37	90.90	46.60	46.43	39.51	34.41	35.69	70.71	70.24	59.81	28.63	116.88	27.52	112.96	149.12	38.41	68.03	50.14	41.70	15.22	30.06	66.15	57.62	28.73	9.81	46.01	20.90
36	E5_Da	NovelBoundary	0	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.65	3.28	0.00	1.66	1.31	6.14	8.37	0.00	6.73	0.00	0.00	0.00	1.80	0.00	0.00	0.00	3.56	0.00	0.00	1.80	0.00
37	E5a_E6a	KnownJunction	0	49.67	88.81	33.41	113.67	57.33	41.59	22.08	18.56	50.00	81.13	72.47	49.94	27.64	130.39	40.86	90.73	159.12	43.92	40.46	66.99	35.58	11.57	13.00	60.47	39.82	23.00	4.72	32.58	28.03
38	Ix	Intron	0	2.56	2.26	0.51	2.65	1.38	3.34	4.64	0.56	3.72	2.92	4.01	1.74	0.87	2.17	0.94	1.14	4.22	1.30	2.99	1.14	2.42	0.47	0.43	2.01	0.47	0.68	1.51	1.56	0.63
39	Ix_SR1	SilentIntronRegion	0	2.65	2.34	0.53	2.58	1.43	3.37	4.81	0.53	3.78	2.87	4.10	1.77	0.90	2.17	0.97	1.15	4.26	1.30	3.05	1.09	2.41	0.49	0.45	2.06	0.47	0.68	1.57	1.49	0.62
40	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	4.69	0.00	2.56	0.00	1.51	1.90	4.39	1.56	0.90	0.00	2.28	0.00	0.97	2.93	1.26	1.22	2.41	2.72	0.00	0.00	0.74	0.24	0.69	0.00	3.59	0.88
41	E6_Aa	NovelBoundary	0	2.30	0.00	1.10	0.00	0.00	5.03	2.35	0.00	1.89	7.55	0.00	4.34	0.00	1.99	8.37	2.83	10.13	4.62	0.00	3.47	1.72	2.38	2.51	11.36	3.86	0.00	0.00	2.20	1.78
42	ER6a	ExonRegion	0	68.08	77.25	40.32	66.44	60.04	80.90	43.72	47.16	58.22	99.60	75.46	67.63	32.95	118.19	62.45	114.48	184.74	46.52	73.11	58.14	57.51	21.97	19.90	76.74	58.56	27.46	59.87	50.26	32.44