Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PVR	Gene	0	13.64	25.07	20.87	3.42	4.61	13.14	2.56	2.08	12.90	16.16	7.20	7.19	7.62	19.98	3.33	6.89	10.84	19.10	6.22	3.14	17.86	18.81	11.59	35.18	18.90	10.00	16.89	4.54	12.19
2	344956	Transcript	0	1.59	2.93	3.88	1.61	0.89	2.71	0.17	0.17	2.38	2.31	1.50	0.49	1.45	2.62	0.97	0.95	1.58	2.50	1.02	0.20	3.84	6.92	1.26	8.27	2.28	1.44	3.65	1.15	3.45
3	425690	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	187830	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	406449	Transcript	0	5.66	3.54	1.66	0.00	0.00	1.52	0.00	1.22	0.01	2.33	0.00	1.12	0.38	3.72	0.00	3.03	3.26	4.31	2.07	1.43	1.67	0.88	2.53	4.56	3.10	1.30	4.27	0.84	1.00
6	403059	Transcript	0	11.44	0.00	6.80	0.00	0.00	3.72	0.00	2.54	4.75	1.88	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.40	2.17	2.51	5.53	2.19	2.53	2.16	0.00
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.10	0.00	0.00	0.00	0.00	0.00	0.99	0.00	0.00	0.00	0.00	0.00	0.83	1.06	1.58	0.26	1.55	0.15	0.00	0.83
8	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	1.22	0.00	0.00	0.00	0.00	2.09	0.00	9.15	1.74	2.06	0.00	0.00	3.10
9	E1_Ac	KnownBoundary	0	0.00	0.00	6.00	0.00	6.78	9.36	0.00	0.00	0.00	7.31	1.61	4.82	0.00	8.97	0.00	0.00	1.33	9.25	0.00	0.00	7.86	10.99	9.11	11.31	8.64	7.98	4.92	2.29	0.00
10	ER1b	ExonRegion	0	0.00	0.00	2.77	0.00	4.65	6.60	0.00	0.00	0.00	2.26	0.87	3.34	0.00	3.48	0.00	1.35	0.97	7.64	0.00	0.37	3.80	3.79	4.82	10.61	3.76	4.14	3.91	2.34	2.06
11	ER1c	ExonRegion	0	5.49	4.00	5.76	0.00	1.96	4.30	0.00	0.00	0.00	1.99	0.52	2.14	0.00	4.32	0.00	3.14	2.01	4.86	0.89	2.32	5.18	5.83	5.08	8.86	3.09	2.94	1.33	2.31	2.07
12	E1_Ad	KnownBoundary	0	2.36	4.85	6.45	0.00	0.00	8.52	0.00	0.00	0.00	3.91	0.00	1.87	0.00	6.18	0.00	3.82	3.74	32.36	0.00	4.05	7.74	6.95	2.46	11.36	3.18	0.00	0.00	0.00	0.00
13	ER1d	ExonRegion	0	4.70	7.79	10.56	0.00	0.00	5.82	0.00	0.00	0.62	6.05	0.95	4.22	0.33	8.49	0.00	3.83	5.84	17.95	2.90	2.41	9.05	6.12	10.15	7.06	2.90	8.85	2.40	3.57	1.27
14	E1a_E2a	KnownJunction	0	5.31	3.68	7.77	0.00	0.00	0.00	0.00	0.00	1.19	7.83	2.75	7.68	1.62	6.67	0.00	7.65	4.97	18.49	8.09	0.00	3.77	15.56	14.53	8.13	4.74	10.39	0.00	10.83	1.68
15	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	11.51	6.61	12.67	0.00	0.00	5.71	1.19	0.00	0.52	9.92	0.84	6.01	1.37	14.64	0.00	7.43	4.12	13.02	4.18	1.23	4.52	11.12	9.48	14.64	6.32	7.52	5.87	3.05	5.64
17	E2_Ab	KnownBoundary	0	11.50	12.51	20.90	0.00	0.00	10.17	5.84	0.00	2.71	8.59	1.42	9.31	0.00	16.22	0.00	6.43	5.67	19.26	8.09	3.97	11.51	11.13	5.02	22.31	8.75	3.56	8.75	0.00	5.71
18	ER2b	ExonRegion	0	14.15	17.05	24.76	0.00	1.85	15.16	5.42	0.70	4.13	15.17	3.37	9.27	3.19	28.97	3.48	14.94	11.42	21.68	6.32	1.21	14.97	21.49	15.84	31.84	14.72	8.55	9.86	2.52	7.24
19	E2a_E3a	KnownJunction	0	21.47	17.06	29.40	0.00	0.00	13.81	5.09	0.00	4.90	24.37	3.23	5.09	1.85	33.59	0.00	17.75	11.86	37.76	0.00	0.00	28.52	10.84	24.77	29.13	15.95	9.53	35.53	12.45	13.21
20	I2_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	3.83	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	22.05	26.17	37.52	0.00	4.63	20.40	4.97	1.48	10.75	29.37	7.38	14.16	7.69	36.27	0.79	13.87	16.32	30.95	8.21	5.80	25.93	26.00	20.89	37.08	25.67	16.92	21.55	6.99	13.06
22	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	2.61	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.60
23	E3a_E4a	KnownJunction	0	22.18	47.21	38.54	0.00	7.37	23.98	7.95	2.29	20.98	31.96	4.33	15.30	4.78	41.99	0.00	22.26	18.89	61.13	0.00	4.13	38.14	47.45	29.06	73.57	35.08	19.35	37.47	11.55	16.44
24	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER4a	ExonRegion	0	26.81	43.43	37.62	0.06	6.04	20.71	2.61	1.05	11.11	27.46	9.92	20.57	8.81	39.62	1.38	10.25	16.83	37.47	5.94	4.79	31.28	43.77	26.05	48.49	31.63	19.66	20.49	9.45	9.79
26	E4a_E5a	KnownJunction	0	19.35	17.94	46.42	0.00	7.37	21.41	2.75	7.02	9.56	13.98	4.68	15.54	9.81	42.61	8.37	3.44	7.74	41.61	0.00	7.44	14.40	43.56	17.73	30.33	31.75	11.59	14.96	16.80	8.48
27	E5_Aa	NovelBoundary	0	2.42	14.45	3.09	0.00	0.00	0.00	0.00	0.00	2.80	1.80	0.00	1.87	0.00	1.75	0.00	11.32	1.28	4.62	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	0.00	0.00
28	ER5a	ExonRegion	0	30.53	35.30	44.89	2.40	9.39	23.19	2.42	1.41	16.07	22.66	11.13	16.10	12.83	42.03	0.49	13.23	18.15	38.14	8.60	4.13	36.79	47.85	20.22	57.32	35.94	23.00	16.04	5.90	19.28
29	E5_Da	NovelBoundary	0	0.00	8.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	2.98	2.23	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.36
30	E5a_E6a	KnownJunction	0	19.23	26.27	41.56	0.00	0.00	22.14	0.00	2.04	10.29	18.57	9.49	23.19	16.21	31.40	0.00	6.50	18.77	42.38	0.00	7.11	30.52	34.37	12.80	37.27	19.51	41.50	25.45	2.29	12.97
31	E5a_E7a	KnownJunction	0	0.00	0.00	7.18	0.00	0.00	1.69	0.00	0.00	1.40	1.76	1.61	0.00	1.62	2.97	0.00	0.00	2.34	0.00	0.00	0.00	5.50	16.24	0.00	9.15	0.00	0.00	4.62	2.29	4.89
32	E6_Aa	NovelBoundary	0	0.00	0.00	1.47	0.00	14.74	1.57	0.00	0.00	0.00	1.76	1.30	0.00	0.00	0.97	0.00	2.75	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
33	E6a_E7a	KnownJunction	0	11.44	0.00	6.80	0.00	0.00	3.72	0.00	2.54	4.75	1.88	0.00	1.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.40	2.17	2.51	5.53	2.19	2.53	2.16	0.00
34	ER6a	ExonRegion	0	31.88	17.52	45.21	1.52	0.00	16.15	0.50	3.53	12.17	16.66	10.46	21.90	16.51	31.90	3.97	10.23	19.32	28.88	4.15	6.21	28.11	38.38	18.23	36.39	25.55	32.22	21.37	8.42	15.32
35	ER6b	ExonRegion	0	26.50	36.99	28.17	0.00	5.31	21.31	1.61	1.19	13.95	17.27	9.34	8.12	11.49	33.60	1.04	8.83	19.77	25.39	8.28	5.85	25.27	33.00	20.79	47.13	29.11	12.31	14.45	6.13	17.72
36	E6_Db	KnownBoundary	0	2.36	4.17	4.48	0.00	0.00	1.73	0.00	2.54	0.00	1.60	0.00	0.00	3.60	3.06	0.00	0.00	2.21	9.25	0.00	0.00	3.45	0.00	2.51	2.39	1.59	5.45	0.00	0.00	2.05
37	E6b_E7a	KnownJunction	0	19.11	16.00	25.76	0.00	5.45	21.29	2.46	0.00	11.42	11.14	9.36	6.36	17.39	23.64	0.00	2.91	16.52	42.38	0.00	4.13	15.96	35.83	13.20	33.20	17.69	17.34	20.92	2.29	11.46
38	ER6c	ExonRegion	0	5.66	3.54	1.66	0.00	0.00	1.52	0.00	1.22	0.01	2.33	0.00	1.12	0.38	3.72	0.00	3.03	3.26	4.31	2.07	1.43	1.67	0.88	2.53	4.56	3.10	1.30	4.27	0.84	1.00
39	E6_Dc	NovelBoundary	0	5.31	13.77	7.70	0.00	0.00	7.44	0.00	0.00	0.00	0.00	0.00	0.00	1.50	5.38	0.00	3.82	8.80	9.25	0.00	0.00	5.62	0.00	4.19	6.10	4.89	0.00	0.00	0.00	0.00
40	I6_AR1	ActiveIntronRegion	0	2.85	0.71	1.85	3.18	0.00	3.66	1.79	0.00	1.37	0.64	0.53	0.00	0.00	3.81	0.00	0.40	1.99	0.85	0.71	0.61	1.27	0.00	0.00	5.25	1.90	1.05	0.00	0.00	0.74
41	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.92	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER7a	ExonRegion	0	37.18	21.66	50.74	7.31	0.93	20.49	3.40	2.01	17.70	16.20	8.67	17.12	14.74	38.55	0.00	6.64	25.58	33.52	2.83	2.99	26.25	34.25	14.86	53.85	24.88	16.50	24.95	7.74	24.20
43	E7_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	2.05	2.48	0.00	0.00	0.00	0.00	0.00	4.58	0.00
44	E7a_E8a	KnownJunction	0	32.97	34.03	37.77	9.49	0.00	11.09	4.81	0.00	13.19	18.06	8.16	20.33	4.24	38.86	0.00	10.94	18.57	41.61	8.09	3.14	27.56	10.84	10.00	54.01	18.60	5.84	16.65	6.60	19.61
45	E8_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
46	ER8a	ExonRegion	0	23.82	53.62	41.78	4.22	8.70	24.06	5.56	5.34	28.79	32.92	15.48	13.47	16.66	37.84	6.04	11.99	22.53	33.89	11.68	6.69	35.34	38.06	21.84	70.95	38.14	19.24	36.94	9.48	25.93
47	E8_Da	KnownBoundary	0	7.67	8.63	5.41	0.00	0.00	6.87	0.00	0.00	7.92	1.92	5.69	1.54	10.16	9.04	0.00	0.00	1.76	0.00	8.09	4.13	7.74	2.29	2.41	11.42	9.28	12.10	24.45	0.00	0.00
48	ER8b	ExonRegion	0	4.76	8.79	4.48	4.82	2.67	5.24	0.52	0.51	5.73	5.06	2.88	1.48	2.73	4.90	2.91	1.86	2.41	7.50	3.05	0.60	6.01	3.68	2.71	14.07	6.57	2.77	6.18	1.16	4.63
49	IG38_AR1	ActiveIntergenicRegion	0	0.74	0.00	2.03	2.47	1.68	0.47	0.00	0.63	0.39	3.40	0.41	1.27	0.00	0.39	0.00	0.00	0.51	2.66	0.00	0.00	1.47	0.00	0.62	5.93	0.99	0.00	0.00	0.56	0.00
50	IG38_AR2	ActiveIntergenicRegion	0	0.00	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00