Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HOMER3	Gene	0	21.16	8.33	36.38	9.63	1719.82	21.97	16.72	17.93	47.67	22.40	6.83	13.89	10.58	19.82	40.30	10.78	11.18	75.35	10.62	41.07	16.62	18.16	39.10	720.45	35.42	20.32	17.96	10.78	30.96
2	392351	Transcript	0	5.77	2.27	3.58	2.87	490.80	11.34	8.38	3.66	13.65	9.07	1.97	4.05	1.45	7.66	15.96	2.66	3.45	24.66	2.11	14.97	9.14	5.34	9.84	188.00	9.03	9.05	2.32	3.92	13.77
3	357832	Transcript	0	0.00	0.00	0.00	0.00	68.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.94	0.00	0.00	0.00	0.00	0.00
4	433218	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	221222	Transcript	0	0.00	0.00	0.00	0.00	14.15	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	2.98	0.00	0.00	0.00	7.90	1.63	0.00	0.00	0.00	0.00
6	355887	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	IG25_AR4	ActiveIntergenicRegion	0	0.78	0.00	0.63	0.00	30.58	1.36	0.73	0.67	1.93	1.10	0.65	0.56	0.83	0.66	1.68	0.00	0.39	1.05	0.00	0.86	0.35	0.98	0.00	10.80	1.79	0.57	0.00	0.00	0.00
8	ER1a	ExonRegion	0	2.96	2.28	4.67	0.00	799.58	3.30	7.41	1.74	8.63	4.06	0.49	2.13	1.64	4.01	5.10	0.73	1.24	13.60	3.94	4.81	2.24	2.50	3.21	77.35	2.61	4.25	0.75	3.77	12.43
9	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	6.04	0.00	0.00	2.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	2.02	3.05	0.00	0.00	0.00	0.00	0.00
10	E1a_E2a	KnownJunction	0	5.37	0.00	2.79	0.00	206.61	8.63	7.09	2.19	10.51	10.39	0.00	4.46	0.00	4.28	25.31	0.00	2.79	13.87	0.00	14.22	9.55	2.43	12.51	131.35	6.78	2.19	0.00	2.29	9.64
11	I1	Intron	0	1.47	0.30	0.94	0.22	38.88	1.15	0.69	0.63	1.95	0.81	0.15	0.36	0.04	0.89	2.29	0.73	1.25	2.81	0.50	1.00	0.62	0.11	0.39	33.11	1.11	0.44	0.23	0.10	0.44
12	I1_SR1	SilentIntronRegion	0	0.39	0.00	0.00	0.00	13.36	0.00	0.00	0.94	1.17	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.27	1.14	0.30	0.00	0.00	0.00	0.51	17.79	0.26	1.13	0.66	0.00	0.00
13	I1_AR1	ActiveIntronRegion	0	4.11	0.00	0.37	0.00	18.68	0.00	0.00	0.69	2.62	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	5.34	3.21	0.00	0.00	0.00	1.66	22.86	0.00	0.00	0.00	0.00	0.00
14	I1_AR2	ActiveIntronRegion	0	4.29	0.00	1.12	0.00	32.53	0.00	0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.41	6.26	0.00	0.00	0.00	0.00	0.00	21.13	0.00	0.00	0.11	0.00	0.00
15	I1_AR3	ActiveIntronRegion	0	1.31	0.00	0.97	0.00	67.35	1.08	1.32	0.54	2.78	0.76	0.62	0.16	0.00	0.93	1.21	0.23	1.35	3.20	0.84	0.36	0.47	0.00	0.47	33.06	0.94	0.00	0.47	0.21	0.61
16	I1_SR2	SilentIntronRegion	0	2.14	0.00	1.12	0.00	43.28	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.51	0.00	0.00	0.00	2.05	0.00	0.00	1.43	0.00	0.00	36.17	0.89	0.00	0.00	0.00	0.00
17	I1_AR4	ActiveIntronRegion	0	1.36	0.41	0.48	0.92	47.21	1.57	0.40	0.34	1.64	0.88	0.00	0.24	0.00	0.68	0.70	1.50	1.49	2.77	0.41	0.35	0.51	0.00	0.46	23.44	0.88	0.00	0.00	0.00	0.69
18	I1_SR3	SilentIntronRegion	0	2.79	0.76	2.12	0.00	29.73	1.80	1.64	0.44	1.64	1.65	0.00	1.29	0.00	1.43	4.35	1.06	1.12	3.85	0.00	2.34	1.33	0.43	0.00	48.34	1.26	0.00	0.00	0.00	0.64
19	I1_AR5	ActiveIntronRegion	0	1.46	0.56	1.59	0.00	23.21	1.56	0.35	0.96	2.32	1.11	0.00	0.56	0.23	1.15	7.07	0.95	2.09	2.79	0.56	2.94	1.10	0.31	0.31	51.64	2.56	1.37	0.00	0.28	0.23
20	E2_Aa	NovelBoundary	0	5.54	0.00	6.20	0.00	33.75	5.37	0.00	2.34	4.29	2.04	0.00	1.39	1.85	6.54	0.00	0.00	4.64	4.62	0.00	0.00	0.00	0.00	2.51	45.64	5.38	1.80	0.00	2.29	0.00
21	ER2a	ExonRegion	0	8.98	4.54	3.27	8.60	466.21	22.10	10.64	7.07	21.81	12.76	5.41	5.55	2.69	14.70	17.46	7.26	6.30	46.52	2.40	25.87	15.63	11.08	13.80	355.29	17.70	20.71	6.19	5.68	19.24
22	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	5.14	0.00	0.00	0.00	0.00	1.35
23	E2a_E3a	KnownJunction	0	16.52	3.88	6.05	8.20	829.70	37.49	31.81	15.33	52.47	24.49	8.00	19.76	13.37	23.15	26.51	7.50	17.17	55.48	0.00	45.73	9.71	22.70	18.22	697.51	44.40	23.09	14.36	11.01	44.21
24	ER2b	ExonRegion	1	18.14	8.09	6.91	7.31	750.30	31.62	27.14	14.59	43.90	22.43	7.42	17.98	11.59	23.44	24.99	10.32	14.49	62.35	0.00	43.67	14.81	18.72	17.67	633.26	38.70	25.99	12.68	3.39	44.70
25	E3_Aa	NovelBoundary	0	5.72	0.00	0.00	0.00	6.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
26	ER3a	ExonRegion	0	24.02	9.31	31.58	15.23	2086.32	36.30	29.62	22.42	68.98	25.56	11.11	24.27	16.35	36.50	37.78	15.89	23.86	100.68	10.84	58.40	21.36	21.89	31.03	1143.94	67.42	33.93	25.70	17.85	53.29
27	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	0.00	2.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	29.79	0.00	0.00	0.00	0.00	0.00
28	E3a_E4a	KnownJunction	0	22.24	12.80	48.36	39.69	3350.19	40.48	21.74	24.68	62.70	31.28	30.81	20.27	8.50	27.98	67.77	20.96	18.35	118.41	16.18	59.87	23.79	24.16	47.87	1420.62	63.08	31.84	47.31	25.88	53.35
29	E4_Aa	NovelBoundary	0	2.60	4.36	1.02	0.00	6.04	0.00	2.92	0.00	1.13	0.00	0.00	0.00	0.00	1.13	0.00	0.00	1.33	0.00	0.00	0.00	0.00	2.43	2.07	30.63	3.64	0.00	0.00	0.00	0.00
30	ER4a	ExonRegion	0	36.20	11.32	42.55	12.52	2317.25	41.56	23.94	32.94	87.88	34.27	17.38	27.60	17.62	38.32	47.35	18.50	21.99	113.24	16.94	65.97	20.30	25.88	48.41	1347.06	62.30	30.35	36.49	17.77	57.93
31	E4a_E5a	KnownJunction	0	47.42	24.43	25.81	0.00	2342.17	31.73	17.68	39.81	98.70	24.45	8.64	22.80	22.86	36.49	49.23	20.35	15.08	114.43	24.28	60.45	23.99	46.38	57.52	1597.31	85.77	19.91	44.28	12.18	31.49
32	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	14.15	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	2.98	0.00	0.00	0.00	7.90	1.63	0.00	0.00	0.00	0.00
33	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.02	0.00	0.00	0.00	0.00	0.00
34	ER5a	ExonRegion	0	42.60	13.71	33.75	12.54	1642.01	26.36	15.58	29.98	70.01	31.79	11.01	18.81	17.77	38.96	62.50	13.18	16.98	112.42	20.69	56.21	31.38	36.43	47.76	1385.03	71.19	25.50	37.74	19.66	32.87
35	E5_Da	KnownBoundary	0	49.55	4.85	45.47	29.98	1601.04	25.40	26.60	29.91	61.00	33.99	16.89	17.56	14.52	26.61	43.25	17.82	19.16	130.87	32.37	67.32	34.62	37.87	52.01	1101.38	67.89	28.58	29.77	7.91	46.78
36	E5a_E10c	KnownJunction	0	0.00	0.00	0.00	0.00	68.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.94	0.00	0.00	0.00	0.00	0.00
37	ER5b	ExonRegion	0	33.49	4.23	31.19	23.40	1169.89	23.92	19.80	23.97	57.70	27.34	11.35	16.08	7.59	21.29	43.19	10.18	15.63	93.52	15.19	50.22	16.23	34.37	47.14	889.76	43.45	25.25	16.61	13.44	38.48
38	E5_Db	NovelBoundary	0	2.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E5b_E6a	KnownJunction	0	31.26	7.76	27.18	39.04	1281.25	21.60	12.76	16.67	62.98	25.13	7.72	17.35	5.45	21.43	43.45	6.81	13.44	36.99	8.09	38.79	3.53	27.32	22.75	725.08	27.20	35.28	31.91	13.34	26.01
40	I5_SR1	SilentIntronRegion	0	0.13	0.00	0.00	0.00	3.28	0.17	0.12	0.00	0.00	0.09	0.00	0.00	0.00	0.00	0.57	0.00	0.09	0.95	0.00	0.51	0.09	0.00	0.00	2.91	0.00	0.00	0.00	0.00	0.33
41	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
42	ER6a	ExonRegion	0	29.31	4.50	68.36	17.02	2410.70	26.21	18.70	22.92	50.05	30.92	10.27	18.43	10.18	32.13	43.79	13.28	17.51	96.59	11.54	41.31	17.15	21.66	54.07	830.22	44.73	29.19	33.10	18.95	38.93
43	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	13.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E6a_E7a	KnownJunction	0	25.60	8.73	89.79	21.14	2265.98	23.56	14.36	28.71	63.25	48.17	5.63	14.40	11.78	24.02	69.16	24.25	15.10	95.42	0.00	50.12	9.15	23.43	49.69	876.30	51.45	35.83	23.46	21.70	27.30
45	I6	Intron	0	1.07	0.00	0.21	0.90	5.51	0.17	0.00	0.23	0.14	0.18	0.00	0.15	0.00	0.00	0.69	0.00	0.19	0.48	0.40	0.00	0.00	0.00	0.00	4.85	0.18	0.98	0.00	0.00	0.17
46	I6_SR1	SilentIntronRegion	0	1.08	0.00	0.21	0.90	5.52	0.17	0.00	0.23	0.14	0.18	0.00	0.16	0.00	0.00	0.69	0.00	0.19	0.48	0.40	0.00	0.00	0.00	0.00	4.86	0.18	0.99	0.00	0.00	0.17
47	E7_Aa	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	1.80	0.00	0.00	0.00	1.20	0.00	0.00	0.92	4.62	0.00	0.00	0.00	0.00	0.00	5.56	0.00	0.00	0.00	0.00	0.00
48	ER7a	ExonRegion	0	24.22	5.59	53.18	13.27	1404.35	16.20	18.27	20.03	40.58	27.03	4.62	13.69	11.05	17.09	35.89	15.85	8.96	77.55	11.24	42.82	15.15	14.78	39.45	603.58	24.47	16.96	22.52	9.44	24.80
49	E7a_E8a	KnownJunction	0	21.82	8.82	43.60	26.31	1010.08	19.80	11.96	13.09	44.70	29.48	2.97	14.46	7.52	18.26	25.11	22.03	13.96	69.22	0.00	40.85	12.59	13.32	43.19	478.11	18.45	22.27	4.27	6.92	29.48
50	E8_Aa	NovelBoundary	0	5.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER8a	ExonRegion	0	27.72	14.40	47.38	8.31	1477.52	18.13	22.91	22.68	57.13	25.98	4.78	11.96	12.07	19.24	52.94	16.29	13.78	78.31	15.67	61.02	20.20	16.19	57.32	704.27	21.18	22.16	13.13	12.40	38.13
52	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
53	E8a_E9a	KnownJunction	0	22.18	9.21	43.92	0.00	2181.69	16.19	17.28	27.27	62.15	16.50	3.23	8.37	13.57	15.60	58.00	3.75	10.76	60.11	16.18	55.24	30.52	11.28	46.10	925.35	30.19	33.95	30.22	21.84	37.40
54	I8_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	I8_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	13.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00
57	ER9a	ExonRegion	0	19.09	11.70	44.19	8.07	2293.40	13.38	13.51	20.51	52.95	12.86	3.98	15.40	13.69	19.61	71.07	14.84	6.64	79.24	8.64	39.93	17.38	12.60	52.77	679.74	29.75	26.54	16.74	12.31	31.24
58	E9_Da	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	1.13	0.00	0.00	0.00	0.00	0.00	3.47	0.00	0.00	0.00	5.08	0.00	0.00	0.00	0.00	1.55
59	E9a_E10a	KnownJunction	0	24.54	8.92	44.67	0.00	3235.69	28.39	14.19	18.71	67.91	28.64	2.94	15.06	12.90	18.74	78.33	14.53	6.51	84.76	16.18	48.38	10.19	13.61	46.54	792.67	23.75	14.46	9.09	9.12	32.95
60	E9a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	I9	Intron	0	1.23	0.00	0.00	0.00	15.19	1.42	1.86	0.85	0.00	0.50	0.00	0.00	0.30	0.68	0.00	0.29	0.17	2.51	0.00	0.32	0.00	0.00	0.00	3.22	0.00	0.00	0.00	0.00	0.23
62	I9_AR1	ActiveIntronRegion	0	1.30	0.00	0.00	0.00	36.23	3.34	2.62	0.83	0.00	0.31	0.00	0.00	0.00	0.55	0.00	0.18	0.73	2.92	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	0.00	0.00
63	I9_SR1	SilentIntronRegion	0	1.24	0.00	0.00	0.00	10.41	0.99	1.70	0.86	0.00	0.55	0.00	0.00	0.37	0.72	0.00	0.31	0.04	2.45	0.00	0.40	0.00	0.00	0.00	3.81	0.00	0.00	0.00	0.00	0.29
64	E10_Ab	NovelBoundary	0	17.11	15.32	35.25	0.00	1318.53	9.86	6.52	14.03	26.37	11.50	2.50	8.95	5.29	8.49	15.95	3.37	6.69	41.61	16.18	24.15	9.95	8.07	20.04	400.70	9.43	5.06	2.19	3.15	25.09
65	ER10a	ExonRegion	0	22.94	17.41	59.58	2.93	2847.45	23.92	13.10	22.28	56.51	29.02	2.74	17.07	12.21	18.87	67.21	11.39	9.82	93.06	19.01	50.03	10.13	11.18	44.30	747.52	23.16	15.40	7.69	6.52	37.58
66	ER10b	ExonRegion	0	13.93	9.59	29.11	4.79	1263.69	18.55	10.25	12.57	35.89	20.36	3.09	9.04	8.91	9.29	43.97	6.08	5.43	67.43	9.62	33.74	13.72	17.52	36.86	531.59	24.91	11.74	6.85	5.34	20.07
67	E10_Ac	KnownBoundary	0	8.20	8.53	4.16	0.00	219.14	1.96	0.00	1.99	2.80	3.52	0.00	0.00	1.62	3.08	0.00	0.00	3.53	18.49	8.09	11.58	0.00	5.93	2.27	96.90	1.93	0.00	2.44	0.00	2.01
68	ER10c	ExonRegion	0	14.10	5.83	48.38	5.97	3496.91	19.38	12.52	9.34	41.22	15.90	7.43	6.71	7.01	4.94	28.48	0.64	3.16	39.75	3.51	17.97	20.47	21.86	50.58	510.37	35.03	15.52	18.60	3.24	12.12
69	E10_Da	KnownBoundary	0	21.53	13.86	64.65	9.92	10664.68	48.80	38.62	24.88	101.59	39.83	11.99	13.07	10.70	6.94	80.72	9.26	2.23	113.28	0.00	54.99	58.44	44.53	131.40	1491.80	106.91	25.92	54.12	10.83	24.50
70	ER10d	ExonRegion	0	7.78	5.82	27.44	7.31	3403.11	17.87	12.79	7.73	35.89	16.09	5.61	6.15	4.82	2.18	30.56	1.30	0.37	48.03	9.05	27.62	20.87	12.26	47.58	524.88	44.64	12.03	14.02	5.40	10.81
71	ER10e	ExonRegion	0	0.00	0.00	0.00	0.00	52.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.53	0.00	0.00	0.00	0.00	0.00