Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CLPP	Gene	0	396.62	155.97	349.72	359.93	569.14	162.46	268.30	541.52	297.04	227.30	146.02	270.58	503.47	230.36	320.32	127.37	283.76	239.55	242.63	482.18	141.58	578.48	368.49	237.53	230.41	370.05	137.15	340.62	282.30
2	245816	Transcript	0	483.21	182.53	422.69	371.73	657.50	190.20	364.63	668.82	358.43	286.50	182.67	363.23	643.51	281.20	389.02	148.68	373.95	306.74	296.48	578.77	167.49	698.19	477.20	289.42	268.17	503.15	172.33	451.02	360.96
3	ER1a	ExonRegion	0	159.80	42.58	175.61	325.36	482.00	49.64	88.33	131.14	59.71	69.15	30.65	82.39	142.56	52.94	116.97	63.99	92.35	101.86	59.36	168.94	50.98	199.62	137.97	60.17	55.71	154.31	51.63	153.07	105.27
4	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.14	0.00	2.24	0.00	0.00	2.80	0.00	0.00	0.00	0.00
5	E1a_E2a	KnownJunction	0	488.69	147.17	96.97	318.36	651.38	178.41	229.77	468.00	266.67	237.12	87.53	217.83	383.34	178.89	318.91	212.28	264.69	397.11	291.10	598.91	188.64	531.82	334.70	247.70	211.97	386.66	91.74	305.13	235.45
6	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00
7	I1	Intron	1	25.81	11.39	14.90	108.78	184.42	14.43	45.44	34.73	27.71	13.60	4.96	5.84	54.55	5.23	13.59	9.09	0.78	20.47	11.88	32.35	9.00	67.88	17.01	8.99	8.26	76.65	6.73	30.72	7.05
8	I1_SR1	SilentIntronRegion	1	10.50	6.46	9.84	28.76	90.83	6.69	19.02	16.75	18.24	7.46	0.40	4.12	30.22	2.45	14.19	2.78	0.60	15.28	11.62	10.21	5.85	25.00	6.21	3.51	4.53	38.30	3.79	14.83	5.06
9	I1_AR1	ActiveIntronRegion	1	33.66	14.06	17.71	149.34	233.51	18.47	59.15	43.98	32.99	16.83	7.22	6.78	67.53	6.65	13.74	12.34	0.89	23.54	12.38	43.65	10.74	89.69	22.55	11.80	10.23	96.63	8.33	38.97	8.20
10	E2_Aa	NovelBoundary	0	47.13	26.56	121.16	172.99	229.90	9.55	93.26	68.48	75.70	62.39	29.96	45.33	115.50	12.19	8.37	10.86	25.93	19.26	8.09	28.94	12.92	150.32	24.23	27.34	14.28	77.72	22.17	63.49	26.74
11	ER2a	ExonRegion	0	375.76	132.40	254.57	278.49	472.69	167.52	335.43	504.46	228.67	238.66	118.85	306.85	536.96	186.94	322.42	175.46	359.65	310.78	216.23	474.85	155.34	536.52	447.49	170.03	174.99	492.62	99.67	430.60	305.47
12	E2_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	1.96	0.00	7.56	7.00	2.04	0.00	1.54	5.22	2.08	8.37	0.00	6.69	0.00	0.00	6.53	2.05	1.90	2.17	3.05	1.78	6.39	0.00	6.25	2.91
13	E2a_E3a	KnownJunction	0	375.15	124.00	405.12	238.34	452.87	135.17	437.06	491.44	198.95	248.42	138.84	415.32	569.73	251.41	436.91	84.15	439.09	273.04	169.49	445.83	122.22	514.91	460.78	202.65	174.76	639.68	136.82	530.28	326.73
14	I2	Intron	0	5.04	2.23	6.70	0.99	7.43	10.26	3.34	5.85	9.30	8.98	8.88	5.62	8.68	6.82	6.10	8.63	9.08	4.13	10.16	7.95	7.89	8.22	6.00	7.73	5.33	8.04	12.91	4.28	8.13
15	I2_AR1	ActiveIntronRegion	0	5.06	2.24	6.74	1.00	7.47	10.31	3.36	5.88	9.35	9.03	8.93	5.66	8.73	6.86	6.13	8.67	9.13	4.15	10.21	8.00	7.93	8.27	6.03	7.77	5.36	8.07	12.98	4.30	8.18
16	E3_Aa	NovelBoundary	0	5.54	4.46	29.35	0.00	0.00	8.21	0.00	7.22	5.39	13.62	6.96	13.70	5.89	6.29	0.00	0.00	13.28	0.00	16.18	14.39	7.82	7.44	15.86	8.37	0.00	15.45	17.15	0.00	15.48
17	ER3a	ExonRegion	0	683.04	174.85	661.81	344.15	924.05	240.54	399.26	954.88	535.14	274.58	200.99	470.21	809.93	343.50	420.68	124.89	485.41	320.92	287.46	745.06	210.24	1083.13	482.45	374.94	347.20	713.28	280.53	605.77	508.32
18	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	3.06	0.00	0.00	2.27	0.00	0.00	0.00	0.00	4.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E4a	KnownJunction	0	586.67	207.86	711.62	301.32	614.39	177.53	459.78	838.36	491.17	308.22	271.68	515.50	819.32	355.17	362.16	114.06	469.81	328.65	299.20	671.35	164.25	909.97	606.46	396.88	299.37	593.76	262.35	569.69	532.47
20	E3a_E5a	NovelJunction	0	0.00	0.00	1.54	0.00	6.48	0.00	2.40	10.00	4.11	0.00	0.00	5.81	3.95	0.00	0.00	0.00	2.03	0.00	0.00	0.00	0.00	1.85	4.43	0.00	0.00	0.00	0.00	8.04	2.05
21	E4_Aa	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.58	13.49	0.00	0.00	0.00	2.43	2.31	0.00	0.00	0.00	9.44	0.00	1.52
22	ER4a	ExonRegion	0	612.55	234.40	491.87	638.85	842.65	248.75	467.60	839.60	425.20	360.30	231.22	456.68	791.69	359.16	466.28	179.37	478.95	404.51	392.69	708.21	206.28	801.37	583.21	382.29	358.95	620.89	176.93	527.65	448.85
23	E4_Da	NovelBoundary	0	0.00	0.00	2.74	0.00	0.00	0.00	0.00	4.38	1.19	0.00	0.00	0.00	1.40	1.93	8.17	0.00	4.37	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E4a_E5a	KnownJunction	0	359.46	252.65	397.77	368.62	607.61	173.92	364.74	716.98	320.60	297.99	186.96	339.06	538.77	271.37	271.47	176.94	314.88	260.97	355.84	479.41	151.30	654.19	422.37	276.35	195.87	403.35	194.07	368.71	271.54
25	E4a_E6a	NovelJunction	0	2.24	8.24	10.17	30.63	12.23	0.00	2.80	7.51	1.28	3.75	1.61	2.71	3.47	6.78	0.00	0.00	1.40	0.00	8.09	18.36	0.00	6.95	0.00	5.86	1.93	3.86	0.00	4.45	1.58
26	I4	Intron	0	4.37	0.71	3.62	0.91	3.11	1.75	1.29	4.46	3.86	2.39	0.91	2.29	1.74	1.85	1.76	1.90	7.61	1.96	2.04	2.81	2.36	0.69	0.23	3.02	0.91	2.40	0.47	2.50	3.33
27	I4_SR1	SilentIntronRegion	0	2.90	0.45	3.20	0.00	3.10	1.99	1.51	3.75	4.14	1.72	0.93	2.58	1.59	1.84	1.80	1.93	7.43	1.88	2.49	2.20	2.01	0.35	0.35	2.33	0.93	1.87	0.71	2.56	3.39
28	I4_AR2	ActiveIntronRegion	0	4.07	0.00	7.85	2.93	13.95	6.32	1.61	1.84	2.36	7.94	0.71	4.95	2.60	3.72	0.00	0.00	17.43	1.36	0.00	10.96	8.56	0.00	0.00	5.59	1.43	6.13	0.00	2.93	7.38
29	I4_SR2	SilentIntronRegion	0	10.00	1.73	5.47	3.54	3.09	1.03	1.08	8.26	4.54	4.50	1.00	1.95	2.67	2.31	2.48	2.45	9.51	2.53	1.72	4.53	3.51	1.59	0.00	5.68	1.11	4.27	0.00	3.14	3.87
30	E5_Aa	NovelBoundary	0	5.31	0.00	4.58	0.00	0.00	0.00	0.00	1.94	1.86	3.91	1.61	1.54	0.00	3.63	25.11	0.00	5.58	9.25	8.09	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33
31	I4_AR3	ActiveIntronRegion	0	0.00	0.00	0.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.15	0.00	0.00	0.00	1.19	1.00	2.41	0.00	0.50	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER5a	ExonRegion	0	731.41	307.98	706.99	595.36	1126.44	328.03	509.59	1117.19	631.10	465.59	342.32	546.39	1073.48	475.40	587.27	226.57	552.34	440.71	533.83	912.43	269.95	1072.46	791.30	490.83	521.53	634.67	317.84	633.81	584.58
33	E5_Da	NovelBoundary	0	9.02	3.68	2.62	8.63	11.20	1.69	2.29	11.69	1.19	9.35	0.00	0.00	1.40	4.36	0.00	0.00	10.83	4.62	0.00	0.00	1.60	0.00	2.02	0.00	3.07	5.24	0.00	9.03	1.45
34	E5a_E6a	KnownJunction	0	617.99	213.19	485.12	480.78	789.03	245.21	513.22	815.41	492.57	437.52	262.98	445.02	993.54	390.95	656.76	159.04	450.84	353.70	420.81	713.36	193.45	848.27	690.04	359.55	396.24	656.33	175.23	600.10	451.69
35	I5_SR1	SilentIntronRegion	0	4.76	0.12	0.54	0.00	9.41	0.00	1.31	4.40	0.00	0.19	0.00	0.00	1.68	1.85	6.64	1.36	1.43	1.82	0.17	1.35	1.35	0.00	0.00	0.48	0.00	0.00	0.00	1.51	0.55
36	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	3.72	1.05	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	3.51	0.00	0.00	2.93	2.43	0.00	1.09	1.37	0.00	6.55	0.00	0.00	0.00	0.00	1.02
37	E6_Aa	NovelBoundary	0	2.18	0.00	0.00	0.00	0.00	0.00	2.40	0.00	1.86	7.59	0.00	1.48	0.00	2.50	15.35	0.00	8.46	0.00	16.18	14.64	2.05	0.00	0.00	14.54	1.63	5.62	0.00	0.00	1.91
38	ER6a	ExonRegion	0	324.84	170.70	262.17	199.43	269.40	147.48	206.16	479.53	292.97	213.96	137.39	200.31	419.29	227.42	319.37	118.74	205.44	181.89	235.27	448.06	129.74	527.85	292.39	222.28	213.29	239.07	108.84	236.45	200.22
39	IG50_SR1	SilentIntergenicRegion	0	8.14	1.68	6.21	0.00	5.30	5.92	0.00	2.00	1.80	3.90	1.29	1.34	3.59	4.36	7.98	0.00	2.32	3.14	4.29	15.19	1.55	4.89	0.00	6.32	0.00	7.52	6.96	4.42	9.50