Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	VAPA	Gene	0	188.76	225.38	154.08	317.48	296.44	233.14	433.37	158.41	275.07	208.82	383.75	324.02	373.42	155.12	323.86	153.87	165.32	204.83	383.95	228.41	260.99	142.06	176.81	241.82	224.90	192.41	236.43	248.52	138.21
2	340541	Transcript	1	54.38	42.44	53.58	51.86	80.00	75.89	73.57	63.57	53.31	68.10	84.23	35.79	78.70	68.73	24.47	28.83	40.85	33.20	99.83	81.75	134.95	85.41	24.88	49.38	93.11	29.92	37.68	20.33	18.20
3	400000	Transcript	0	416.74	575.22	406.44	881.36	656.61	626.68	759.89	251.95	487.69	486.90	992.60	886.26	802.46	387.21	547.80	349.83	459.30	507.47	921.09	578.11	637.91	227.46	394.65	670.85	589.24	260.50	654.69	546.21	307.95
4	IG9_AR1	ActiveIntergenicRegion	0	0.46	0.00	0.39	1.66	0.00	0.00	0.00	0.00	0.65	0.00	0.55	2.01	0.00	0.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.42	0.50	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	391.99	116.65	450.20	677.82	712.36	306.36	1190.17	320.24	230.31	392.73	315.85	550.74	757.15	205.19	279.86	395.43	366.15	493.68	270.29	310.92	367.64	329.68	785.56	138.21	286.71	1641.00	238.97	1602.75	412.25
6	E1a_E2a	KnownJunction	1	587.08	476.03	875.98	440.87	837.66	441.46	478.03	481.39	305.01	543.14	800.64	874.56	868.62	478.69	245.16	331.24	558.34	403.01	501.51	536.97	405.56	333.17	807.20	437.25	522.85	644.40	722.40	858.15	455.49
7	E1a_E3a	NovelJunction	0	3.01	9.50	0.00	0.00	0.00	3.61	0.00	6.12	0.00	1.60	3.61	3.98	9.11	0.00	0.00	0.00	2.97	0.00	0.00	7.36	5.13	0.00	0.00	5.26	0.00	3.69	0.00	10.06	0.00
8	E1a_E4a	NovelJunction	0	0.00	0.00	2.74	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E6a	NovelJunction	0	3.01	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.20	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	4.58	0.00
10	I1_AR1	ActiveIntronRegion	0	8.22	1.45	11.51	1.62	3.86	2.02	5.92	2.49	0.82	2.44	1.34	5.68	2.26	2.30	9.94	2.00	2.53	6.67	2.88	6.75	2.90	3.66	1.02	2.91	2.74	7.31	2.11	4.96	1.43
11	I1_AR2	ActiveIntronRegion	0	0.00	2.79	0.00	0.00	0.00	0.00	0.00	0.00	0.64	0.00	0.00	0.65	0.00	0.00	1.46	0.00	0.00	0.65	1.57	0.00	1.80	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00
12	I1_SR3	SilentIntronRegion	0	1.08	0.90	0.00	0.00	0.00	0.17	0.00	0.00	1.03	0.18	0.00	0.70	0.00	0.11	0.58	0.31	1.37	0.45	1.63	0.35	2.97	0.00	0.00	0.80	0.00	0.20	0.92	0.62	0.00
13	I1_AR3	ActiveIntronRegion	0	0.75	1.56	0.38	0.00	0.00	0.65	0.04	0.00	1.45	0.91	0.00	0.67	0.26	0.33	0.00	0.00	0.31	0.00	2.52	0.00	2.25	0.00	0.00	0.52	0.00	0.00	0.00	0.94	0.00
14	I1_AR4	ActiveIntronRegion	0	0.00	1.27	0.48	0.00	0.00	0.60	0.00	0.00	2.07	0.73	0.23	1.49	0.38	0.26	1.96	0.00	0.57	0.00	2.29	0.79	2.44	0.00	0.35	0.55	0.10	0.00	1.78	0.53	0.00
15	I1_AR1	ActiveIntronRegion	0	3.37	1.77	0.89	0.00	0.00	0.00	1.11	0.00	0.00	2.38	1.31	0.00	0.00	0.50	0.00	0.00	2.05	0.00	3.50	0.00	3.13	1.98	0.00	0.00	0.00	0.00	0.00	0.82	0.00
16	I1_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.49	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.47	3.68	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00
18	E2_Aa	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	3.38	0.00	0.00	2.44	1.72	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.66	0.00
19	ER2a	ExonRegion	0	966.50	547.91	1055.48	1079.69	1211.92	724.29	1152.06	953.38	443.06	704.45	1124.17	1114.65	1588.97	537.75	532.39	525.60	585.79	716.11	799.06	779.95	697.36	710.29	746.88	550.27	882.11	697.60	711.41	943.76	637.70
20	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.07	0.00	8.09	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E2a_E3a	KnownJunction	0	1525.13	1155.84	535.67	1429.82	1261.20	1202.29	1795.00	1197.57	807.72	981.26	1714.63	1418.38	1864.45	677.50	880.20	728.65	769.21	984.03	1067.76	1177.88	1093.85	1061.61	972.29	1099.35	1281.28	946.86	877.66	1056.43	946.00
22	I2	Intron	0	0.96	0.95	0.24	0.39	0.09	1.08	0.54	0.10	3.18	1.01	0.47	1.21	0.71	0.28	2.19	0.36	0.64	1.62	3.61	0.96	2.04	0.42	0.29	1.08	0.31	0.53	0.20	1.17	0.28
23	I2_SR1	SilentIntronRegion	0	1.09	1.15	0.23	0.60	0.14	1.35	0.62	0.06	2.96	1.09	0.63	1.49	0.82	0.23	2.26	0.42	0.76	1.71	3.54	0.31	1.76	0.40	0.16	1.09	0.39	0.53	0.16	1.20	0.23
24	I2_AR1	ActiveIntronRegion	0	1.69	0.00	0.00	0.00	0.00	1.27	0.00	1.45	1.71	0.36	0.00	0.36	0.62	0.26	1.29	0.00	1.14	1.78	1.65	2.54	1.87	0.00	2.57	1.12	0.49	0.00	0.00	2.82	0.00
25	I2_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.96	0.00	0.00	5.51	1.44	0.00	0.00	3.90	0.91	0.00	0.00	0.00	0.27	4.53	0.56	4.14	0.00	1.81	4.30	0.00	0.00	0.00	0.00	0.00
26	I2_AR3	ActiveIntronRegion	0	1.16	0.00	0.66	0.00	0.00	0.00	1.10	0.25	4.10	2.04	0.00	1.01	0.94	0.06	1.38	0.68	0.20	0.79	6.41	3.93	2.73	0.66	0.70	1.75	0.20	0.80	0.00	1.78	0.24
27	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	2.92	2.35	0.00	4.11	5.39	0.00	1.48	0.00	1.13	16.74	3.21	0.00	0.00	8.09	3.72	0.00	2.48	0.00	3.05	0.00	0.00	0.00	0.00	0.00
28	ER3a	ExonRegion	0	1083.75	878.56	711.52	1251.59	1149.92	938.82	1413.87	756.17	543.32	933.07	2009.04	1517.34	1463.04	709.14	696.79	563.11	734.63	855.25	1355.88	962.14	925.98	716.80	769.35	939.93	1149.97	663.36	1101.32	1020.34	572.58
29	E3_Da	NovelBoundary	0	2.71	4.75	0.00	0.00	7.37	1.96	0.00	0.00	0.00	2.04	0.00	0.00	0.00	2.13	0.00	7.65	0.00	0.00	0.00	2.98	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
30	E3a_E4a	KnownJunction	0	1200.65	1249.11	1776.08	1367.06	990.93	1143.70	1300.32	903.75	891.59	1078.77	1963.84	1769.52	2350.81	1000.28	831.76	694.99	1140.18	994.05	1529.03	1131.24	1227.70	684.00	829.86	1428.87	1462.18	738.38	1399.18	807.06	987.33
31	I3	Intron	0	1.35	0.00	1.89	10.81	4.29	0.52	3.29	0.93	3.31	1.27	0.15	2.79	1.30	0.34	8.19	0.31	1.69	2.50	5.62	1.29	2.87	0.91	0.91	1.08	0.54	0.79	0.46	2.25	0.00
32	I3_AR1	ActiveIntronRegion	0	0.00	0.00	1.98	31.42	9.73	0.55	4.02	0.73	1.74	2.29	0.00	3.76	0.97	0.36	12.43	0.99	0.00	1.54	2.55	0.79	0.57	2.87	1.41	0.86	0.00	0.00	0.00	1.95	0.00
33	I3_SR1	SilentIntronRegion	0	0.00	0.00	3.37	0.00	0.00	0.00	0.00	0.00	1.34	0.00	0.00	3.23	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.00
34	I3_SR2	SilentIntronRegion	0	2.19	0.00	1.71	1.46	1.99	0.56	3.29	1.13	4.34	0.88	0.24	2.27	1.45	0.37	6.94	0.00	2.74	3.27	7.82	1.69	4.36	0.00	0.74	1.32	0.87	1.28	0.75	2.66	0.00
35	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	0.00	3.95	0.00	0.91	0.00	0.00	1.33	0.00	16.18	0.00	5.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER4a	ExonRegion	0	1628.88	1389.03	1438.30	2244.08	2464.45	1380.32	2321.05	1110.17	1576.45	1374.29	2685.90	2055.11	2974.44	1001.35	1670.09	756.69	987.69	1168.15	1777.03	1531.57	1453.75	1096.91	1156.66	1452.66	1841.83	970.37	1704.89	1582.67	1085.17
37	E4_Da	NovelBoundary	0	0.00	0.00	1.12	16.39	0.00	0.00	2.12	0.00	4.84	1.84	0.00	1.87	0.00	0.00	9.97	0.00	2.41	0.00	0.00	4.13	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E4a_E5a	KnownJunction	1	79.16	57.20	53.72	63.63	132.49	102.52	88.28	60.17	57.04	90.24	77.63	39.61	82.00	76.42	23.72	38.02	36.53	27.74	128.81	110.24	158.68	100.25	32.80	54.79	118.81	34.25	33.60	10.33	16.24
39	E4a_E6a	KnownJunction	0	815.71	1105.04	798.20	1684.12	1270.78	1194.73	1381.68	464.02	898.96	928.02	1894.47	1688.82	1546.87	742.36	1001.98	658.96	876.53	977.61	1698.29	1116.19	1205.32	438.97	763.22	1264.92	1143.03	495.23	1267.88	1065.19	594.71
40	E4a_E7a	NovelJunction	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	3.64	1.61	2.89	0.00	0.00	0.00	0.00	1.40	0.00	8.09	0.00	1.60	0.00	2.27	0.00	0.00	2.19	0.00	0.00	0.00
41	I4	Intron	0	0.66	2.05	0.25	0.99	0.17	1.45	0.55	0.21	2.79	1.66	0.63	1.29	1.52	1.01	2.12	0.89	2.11	1.53	5.06	0.74	3.39	0.25	0.29	1.11	0.48	0.34	0.15	1.03	0.17
42	I4_SR1	SilentIntronRegion	0	0.70	1.70	0.12	0.50	0.00	1.62	0.47	0.26	2.34	1.24	0.78	1.31	1.13	0.82	1.40	1.07	1.83	1.58	4.39	0.86	3.44	0.33	0.29	0.64	0.47	0.27	0.21	0.76	0.22
43	I4_AR1	ActiveIntronRegion	0	0.31	4.56	0.00	1.04	1.02	2.59	1.73	0.00	2.42	2.35	1.04	2.48	1.17	0.75	2.88	0.72	3.15	1.37	5.90	0.40	5.72	0.32	0.00	1.01	0.62	0.62	0.27	0.24	0.00
44	I4_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	3.54	2.64	2.86	0.00	4.52	0.30	0.00	4.23	1.30	1.77	0.00	3.33	2.37	2.87	5.48	0.00	1.95	0.00	0.00	2.15	0.00	2.40	0.00	0.00	0.00
45	I4_SR2	SilentIntronRegion	0	0.70	2.04	0.46	1.57	0.13	1.01	0.38	0.20	3.36	2.05	0.39	0.99	2.05	1.25	2.86	0.68	2.23	1.47	5.67	0.68	2.92	0.15	0.35	1.66	0.47	0.34	0.05	1.51	0.15
46	E5_Aa	NovelBoundary	0	5.19	4.85	1.05	0.00	6.78	3.64	2.92	0.00	0.00	1.52	0.00	3.01	3.34	2.50	0.00	0.00	2.39	4.62	16.18	0.00	0.00	0.00	0.00	4.90	0.00	0.00	0.00	12.99	0.00
47	ER5a	ExonRegion	0	55.86	52.19	67.25	36.51	66.68	73.37	74.70	75.42	51.54	64.66	99.16	42.06	84.22	67.75	25.18	26.38	42.04	30.24	97.86	67.69	129.22	97.78	25.77	54.35	91.61	34.95	36.35	22.27	20.32
48	E5_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.20	0.00	0.00	3.22	1.37	0.00	0.00	1.19	4.62	16.18	4.13	14.12	0.00	0.00	3.05	0.00	0.00	0.00	4.58	0.00
49	E5a_E6a	KnownJunction	0	28.14	17.94	39.76	55.43	40.82	51.80	57.73	55.14	51.34	49.41	75.89	25.69	69.87	62.02	24.52	22.11	43.98	41.61	72.83	67.32	116.96	58.19	16.06	39.00	68.91	20.56	43.09	28.40	18.03
50	I5	Intron	0	2.18	3.37	0.85	1.34	2.07	4.15	1.16	0.97	4.20	3.57	3.23	2.53	2.15	3.15	3.18	2.43	5.21	4.54	5.58	1.87	6.77	0.43	0.37	3.65	2.52	0.72	0.87	1.77	0.83
51	I5_SR1	SilentIntronRegion	0	1.32	2.66	0.80	0.00	1.10	3.30	0.71	0.21	3.06	2.44	2.20	2.61	1.61	1.28	4.02	1.66	3.36	3.72	6.69	2.03	5.90	0.30	0.30	3.04	1.44	0.81	0.62	1.77	0.64
52	I5_AR1	ActiveIntronRegion	0	1.95	3.56	0.81	0.93	1.27	2.08	1.67	1.67	4.03	2.90	2.95	2.34	1.24	2.76	0.60	2.50	5.42	3.89	5.75	1.82	4.94	0.59	0.94	2.63	1.95	1.10	0.95	1.65	0.56
53	I5_AR2	ActiveIntronRegion	0	1.51	2.49	1.21	1.15	0.78	1.47	1.61	0.59	4.07	2.13	3.62	2.00	0.42	3.55	1.40	3.51	3.06	4.73	2.41	1.32	1.85	0.29	0.00	2.77	1.83	0.25	0.72	1.04	1.28
54	I5_AR3	ActiveIntronRegion	0	4.29	3.28	2.24	0.00	0.00	5.04	0.00	0.00	1.69	1.44	0.00	2.47	0.00	1.81	5.60	2.53	2.00	2.73	6.03	0.00	9.98	0.00	0.00	4.30	0.24	0.00	9.16	0.00	0.00
55	I5_SR3	SilentIntronRegion	0	3.72	5.09	1.05	2.27	3.60	7.36	1.27	0.83	5.20	4.04	3.19	2.52	2.05	4.04	4.35	1.43	5.25	5.90	4.39	1.47	9.68	0.19	0.00	4.91	4.87	0.31	2.10	1.32	0.42
56	I5_AR4	ActiveIntronRegion	0	3.00	3.27	0.56	3.63	4.46	7.53	0.82	1.63	5.68	7.18	5.38	3.03	5.77	6.06	5.67	4.03	9.63	5.64	6.47	2.42	11.51	0.73	0.18	5.67	3.57	0.65	0.00	2.86	1.69
57	E6_Aa	NovelBoundary	0	0.00	4.46	0.95	0.00	19.75	5.10	0.00	0.00	6.36	3.75	0.00	7.14	1.24	3.63	0.00	3.37	2.79	13.87	0.00	0.00	2.05	0.00	2.46	5.14	3.52	2.02	0.00	0.00	3.17
58	ER6a	ExonRegion	0	1108.11	1177.26	942.67	1647.83	1556.19	1156.29	1925.62	691.69	1227.54	1133.50	2452.70	1815.11	1889.17	890.12	1542.87	628.14	865.66	1039.67	1660.10	1294.85	1263.83	775.80	871.96	1214.27	1449.04	713.30	1498.18	1231.49	654.19
59	E6_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	3.49	0.00	0.00	1.49	1.52	0.00	5.36	0.00	0.00	0.00	3.82	4.05	18.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00	1.84	0.00
60	E6a_E7a	KnownJunction	0	1289.42	1425.95	988.00	1469.73	1434.96	1438.36	2010.07	876.08	1345.94	1382.52	2587.74	1903.40	2324.48	1033.38	1792.88	844.09	982.78	1194.40	1924.66	1180.45	1693.50	923.34	977.80	1503.10	1580.27	894.93	1551.51	1475.91	842.97
61	I6	Intron	0	4.10	2.19	1.62	0.63	0.72	2.34	0.83	0.65	1.63	1.99	2.03	2.59	0.46	2.23	3.78	1.44	2.10	6.79	4.41	0.65	2.39	0.26	0.27	2.40	0.97	0.83	0.75	1.53	0.27
62	I6_AR1	ActiveIntronRegion	0	2.79	1.63	1.56	0.72	1.47	2.89	0.40	0.74	1.69	2.34	1.36	3.71	0.52	2.46	4.88	1.77	1.93	5.69	2.24	0.00	2.00	0.00	0.36	2.37	0.14	0.79	0.18	1.79	0.53
63	I6_AR2	ActiveIntronRegion	0	2.14	3.28	3.37	0.00	0.00	1.37	0.00	0.00	2.25	1.44	8.33	2.47	1.30	0.91	0.00	2.53	0.00	2.73	9.05	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	6.52	0.00
64	I6_SR1	SilentIntronRegion	0	4.75	1.80	1.50	0.57	0.00	2.46	0.96	0.73	1.78	1.67	2.54	3.11	0.49	2.16	3.73	1.21	2.55	6.86	5.76	1.48	2.98	0.57	0.17	2.02	2.16	0.75	1.16	1.59	0.00
65	I6_SR2	SilentIntronRegion	0	4.56	3.13	1.78	0.65	0.88	1.72	1.09	0.50	1.41	2.09	1.88	1.01	0.33	2.14	2.93	1.38	1.80	7.82	4.65	0.28	2.06	0.16	0.29	2.90	0.37	0.99	0.83	1.10	0.36
66	E7_Aa	NovelBoundary	0	0.00	4.85	1.22	18.12	0.00	3.18	2.86	2.54	4.66	3.40	0.00	0.00	3.34	1.37	9.17	0.00	2.32	0.00	32.37	0.00	5.33	0.00	0.00	10.29	0.00	0.00	0.00	1.80	3.27
67	ER7a	ExonRegion	0	662.14	1057.15	426.11	1070.83	1091.32	909.80	1386.29	455.72	1287.77	747.24	1402.68	1089.16	1421.20	589.58	1480.67	550.45	541.09	782.99	1494.30	931.52	1022.52	499.63	517.52	956.36	820.91	362.92	962.13	606.62	468.72
68	E7_Da	KnownBoundary	1	229.75	412.23	40.46	553.47	611.89	474.72	823.15	125.71	582.16	269.75	367.59	370.32	373.66	187.78	1030.08	265.83	155.11	236.83	743.61	366.61	585.41	139.14	148.24	396.34	251.71	137.15	260.37	182.33	138.95
69	ER7b	ExonRegion	1	17.78	45.41	14.69	78.59	42.44	58.63	138.09	39.87	76.42	45.79	90.73	83.69	58.05	32.06	93.62	40.70	42.06	37.32	143.88	40.02	70.50	15.95	26.09	76.78	35.44	25.76	41.50	27.23	21.20
70	IG10_SR8	SilentIntergenicRegion	0	1.48	0.00	0.00	0.00	0.00	0.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.51	3.30	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.00	0.00