Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RFNG	Gene	0	77.36	37.52	56.77	48.19	27.01	47.85	51.01	61.37	49.23	50.48	20.78	69.39	57.71	66.45	62.62	57.67	113.39	106.99	56.73	87.02	50.99	73.91	56.63	95.05	53.52	38.51	20.17	44.54	54.42
2	429557	Transcript	0	42.62	5.43	13.25	16.73	2.38	14.46	15.03	25.00	11.97	13.81	2.68	17.34	3.65	21.30	35.78	19.68	47.75	39.21	28.05	43.74	19.60	10.41	3.25	35.97	9.25	4.90	0.52	16.21	8.11
3	310496	Transcript	0	113.49	63.01	108.66	92.34	55.31	81.85	80.61	100.07	85.39	74.73	33.94	116.58	87.11	100.34	85.35	86.23	155.82	155.96	72.14	112.74	84.66	118.55	88.10	141.92	90.59	65.40	33.94	60.06	82.47
4	ER1a	ExonRegion	0	12.65	5.40	4.47	13.56	3.88	3.79	6.77	10.02	3.72	8.10	2.18	7.14	6.71	10.55	11.18	12.47	7.86	27.01	7.90	15.13	5.89	10.88	10.29	13.48	6.48	3.47	1.38	3.03	4.97
5	E1_Da	NovelBoundary	0	0.00	0.00	3.61	8.63	0.00	1.76	0.00	5.82	0.00	2.00	0.00	1.33	1.37	1.13	7.37	0.00	0.00	18.49	8.09	0.00	0.00	0.00	10.74	0.00	0.00	1.89	0.00	6.38	2.64
6	E1a_E2a	KnownJunction	0	33.50	28.21	14.53	42.71	6.63	23.52	35.64	47.97	15.44	39.43	13.95	40.24	42.51	38.55	0.00	38.86	47.34	55.48	8.09	37.79	17.41	32.77	45.31	44.26	32.88	11.89	10.09	13.34	27.10
7	E2_Aa	NovelBoundary	0	3.01	14.25	1.35	9.49	0.00	1.84	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.25	0.00	0.00	1.52	1.85	2.22	5.74	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	65.31	15.89	18.04	28.95	9.45	33.47	28.71	67.29	20.50	40.25	14.89	34.05	41.30	52.29	32.69	38.48	55.52	72.74	38.70	80.94	24.98	67.40	42.00	78.76	46.58	22.42	8.97	16.17	30.71
9	E2_Da	NovelBoundary	0	25.07	0.00	1.35	0.00	0.00	5.41	0.00	8.86	1.49	3.64	0.00	1.81	0.00	8.82	9.97	20.73	9.41	33.13	0.00	0.00	2.05	2.09	0.00	8.19	1.63	0.00	0.00	2.29	3.14
10	E2a_E3a	KnownJunction	0	78.21	19.68	22.32	56.30	37.87	27.13	35.47	93.91	41.51	29.40	13.57	42.17	38.40	70.48	34.88	35.50	69.06	85.02	24.28	104.95	30.68	106.33	30.88	71.30	62.81	25.06	10.14	27.59	27.90
11	Ix	Intron	0	17.82	2.07	4.13	7.25	1.10	5.25	4.30	10.14	4.47	6.16	1.87	7.35	2.77	8.59	15.89	11.19	33.88	20.96	3.95	12.05	4.01	4.25	2.23	9.67	5.78	3.53	0.82	5.49	7.07
12	Ix_AR1	ActiveIntronRegion	0	17.90	2.08	4.15	7.28	1.10	5.27	4.32	10.18	4.49	6.19	1.88	7.38	2.78	8.63	15.96	11.24	34.02	21.05	3.97	12.09	4.02	4.27	2.24	9.71	5.81	3.55	0.83	5.52	7.10
13	E3_Aa	NovelBoundary	0	30.38	0.00	11.61	0.00	0.00	5.49	8.98	17.12	14.71	5.67	0.00	12.08	6.85	16.75	16.54	10.79	78.33	36.86	8.09	17.12	5.90	7.29	0.00	30.80	3.52	2.06	0.00	10.06	12.25
14	ER3a	ExonRegion	0	110.77	46.21	51.39	50.83	36.85	52.65	38.03	66.12	50.74	56.17	19.63	80.47	48.76	90.68	66.34	58.08	133.67	123.10	43.94	106.31	44.72	110.02	68.54	123.91	68.77	38.47	15.03	39.26	57.70
15	E3_Da	NovelBoundary	0	7.85	0.00	5.26	29.55	7.07	6.87	0.00	6.97	9.23	7.55	0.00	5.21	0.00	11.99	0.00	6.43	43.71	27.74	8.09	0.00	1.60	0.00	0.00	8.43	3.18	0.00	0.00	1.89	5.35
16	E3a_E4a	KnownJunction	0	126.46	54.20	78.28	76.79	28.15	79.46	46.12	84.65	78.02	74.74	39.20	78.01	79.45	100.50	31.29	85.60	136.70	177.75	80.92	157.21	76.37	115.03	110.37	167.84	105.93	71.54	36.58	45.96	68.17
17	Ix	Intron	0	8.25	1.55	4.02	0.00	0.00	3.97	0.97	1.77	0.54	0.69	1.15	1.48	1.56	4.13	2.22	3.25	8.62	9.42	4.61	0.00	2.06	1.73	0.00	5.17	1.38	2.27	0.00	4.71	1.61
18	Ix_AR1	ActiveIntronRegion	0	8.41	1.58	4.10	0.00	0.00	4.04	0.99	1.81	0.55	0.71	1.17	1.51	1.57	4.20	2.26	3.31	8.78	9.60	4.70	0.00	2.10	1.77	0.00	5.27	1.39	2.31	0.00	4.80	1.64
19	E4_Aa	NovelBoundary	0	8.49	0.00	1.25	0.00	0.00	0.00	2.75	0.00	2.77	1.56	0.00	5.48	1.97	10.13	0.00	17.90	30.82	13.87	0.00	6.45	3.09	2.09	0.00	0.00	0.00	0.00	0.00	4.00	7.16
20	ER4a	ExonRegion	0	135.80	57.25	76.06	50.81	51.76	75.37	73.08	114.78	76.84	92.22	41.30	108.44	102.92	119.58	91.14	81.77	213.64	157.60	63.01	139.15	71.75	148.47	97.13	156.35	99.55	62.89	29.60	69.59	91.67
21	E4_Da	KnownBoundary	0	55.56	0.00	15.67	0.00	7.37	7.14	8.01	25.98	4.75	13.14	2.47	22.68	1.62	33.37	9.97	14.84	56.79	9.25	16.18	26.13	10.63	12.25	5.02	23.99	5.64	3.65	0.00	19.90	5.28
22	E4a_E4b	KnownJunction	1	88.12	67.38	83.22	79.81	63.81	101.87	88.63	99.43	85.72	74.98	23.57	125.06	97.06	95.61	84.11	81.01	164.72	182.88	24.28	77.08	78.54	132.77	94.36	135.00	77.59	65.27	17.15	27.54	91.58
23	E4a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER4b	ExonRegion	0	42.62	5.43	13.25	16.73	2.38	14.46	15.03	25.00	11.97	13.81	2.68	17.34	3.65	21.30	35.78	19.68	47.75	39.21	28.05	43.74	19.60	10.41	3.25	35.97	9.25	4.90	0.52	16.21	8.11
25	E4_Ab	NovelBoundary	0	20.47	3.78	8.82	0.00	0.00	3.41	0.00	9.56	1.67	4.07	1.61	11.17	0.00	3.50	8.97	3.82	19.00	23.12	0.00	23.40	0.00	2.43	0.00	11.07	0.00	0.00	0.00	5.89	0.00
26	E4_Db	NovelBoundary	0	16.63	4.85	2.14	0.00	0.00	7.10	2.29	4.68	2.38	7.11	0.00	6.51	3.18	10.79	0.00	20.81	32.84	4.62	0.00	16.21	3.57	1.90	2.12	8.31	3.07	6.05	0.00	2.20	1.29
27	ER4c	ExonRegion	0	86.45	60.22	87.90	73.13	64.76	83.86	87.35	108.01	78.65	83.74	29.36	116.68	93.10	98.87	78.41	85.20	168.96	160.11	55.82	92.75	67.99	132.80	92.82	145.56	95.29	67.58	19.54	42.38	74.27
28	ER4d	ExonRegion	0	128.73	78.72	127.67	63.06	41.96	79.94	77.86	101.19	74.50	82.48	35.27	109.84	92.18	103.02	60.49	81.22	144.87	164.01	77.84	122.64	86.82	137.98	100.50	149.34	107.91	69.41	30.38	58.11	80.02
29	E4_Dc	NovelBoundary	0	53.32	13.28	8.30	9.49	0.00	27.13	10.13	35.08	12.64	18.18	3.04	14.94	1.62	15.53	34.28	26.01	57.89	47.01	24.28	46.31	12.59	6.08	2.07	22.55	5.27	4.25	0.00	12.27	2.91
30	E4c_E5a	KnownJunction	0	108.65	56.23	112.47	76.14	54.23	58.40	64.31	81.37	70.53	74.42	57.86	100.09	65.66	77.88	24.91	58.14	117.50	102.74	40.24	55.74	70.07	94.90	117.17	104.32	93.16	86.51	64.36	70.41	84.38
31	Ix	Intron	0	21.86	0.00	0.00	0.00	0.00	4.67	2.74	8.76	3.06	5.89	0.00	0.84	0.00	3.70	10.01	3.37	0.00	15.72	26.07	14.47	1.94	4.90	0.00	8.78	1.94	1.07	0.00	2.22	5.48
32	Ix_AR1	ActiveIntronRegion	0	22.46	0.00	0.00	0.00	0.00	4.80	2.82	9.00	3.14	6.05	0.00	0.86	0.00	3.80	10.28	3.47	0.00	16.11	26.78	14.86	1.99	5.04	0.00	8.96	1.98	1.10	0.00	2.28	5.63
33	E5_Aa	NovelBoundary	0	46.13	0.00	16.44	9.71	0.00	19.76	13.96	45.69	10.51	2.04	0.00	21.20	3.28	23.93	35.28	39.17	55.53	47.78	16.18	18.61	9.06	9.29	0.00	38.40	5.19	7.30	0.00	17.66	2.97
34	ER5a	ExonRegion	0	119.53	67.86	95.02	113.74	43.33	77.16	93.91	95.54	69.92	77.23	27.19	106.80	86.78	101.31	85.80	100.68	168.92	175.34	81.52	111.00	77.02	109.27	96.43	119.62	83.37	69.09	29.92	61.89	93.07
35	E5_Da	NovelBoundary	0	0.00	4.85	1.35	0.00	0.00	5.52	2.80	6.97	3.99	0.00	0.00	1.87	1.18	5.69	9.57	3.82	9.68	0.00	8.09	0.00	4.01	0.00	0.00	5.14	1.55	0.00	0.00	4.27	0.00
36	E5a_E6a	KnownJunction	0	140.33	47.99	85.93	96.85	73.54	102.10	74.32	124.61	92.00	57.00	21.23	94.76	81.59	107.88	104.84	94.86	147.91	134.08	89.02	154.73	117.04	100.83	78.60	142.00	95.74	49.09	15.31	37.07	60.58
37	Ix	Intron	0	8.39	2.19	0.46	0.00	0.00	3.51	2.02	11.07	1.53	0.66	0.11	2.53	0.47	4.57	6.28	3.62	13.59	6.96	8.15	2.51	1.82	0.82	1.15	6.66	1.43	1.15	0.00	1.04	1.64
38	Ix_SR1	SilentIntronRegion	0	8.42	2.20	0.46	0.00	0.00	3.52	2.03	11.11	1.54	0.66	0.11	2.54	0.47	4.59	6.30	3.63	13.64	6.98	8.18	2.52	1.83	0.82	1.16	6.68	1.44	1.15	0.00	1.04	1.65
39	E6_Aa	NovelBoundary	0	11.15	0.00	1.25	9.92	6.78	0.00	0.00	11.74	10.81	0.00	0.00	0.00	0.00	3.68	15.95	18.28	8.40	0.00	16.18	0.00	0.00	0.00	0.00	11.25	7.24	0.00	0.00	2.20	1.68
40	ER6a	ExonRegion	0	132.05	57.83	125.07	91.58	65.57	82.11	89.68	110.21	96.90	82.40	33.52	143.58	97.35	116.12	82.25	90.66	173.83	163.08	83.04	126.81	83.61	137.91	72.37	149.55	87.47	70.05	29.50	80.82	84.34
41	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	1.00	0.00	3.67	5.92	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	2.25	0.00
42	E6a_E7a	KnownJunction	0	109.18	81.34	169.05	162.42	67.79	93.62	91.26	120.09	128.30	88.16	45.33	165.30	97.63	123.41	160.05	111.69	189.93	196.63	104.75	148.44	98.51	149.11	71.81	217.61	115.44	64.80	54.52	85.10	93.89
43	E7_Aa	NovelBoundary	0	0.00	0.00	1.40	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	3.12	0.00	0.00	1.22	0.00	16.18	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	3.17
44	ER7a	ExonRegion	0	81.33	46.71	70.86	55.14	32.23	59.61	64.92	68.14	65.23	61.14	27.52	87.20	78.59	77.50	80.34	71.57	138.85	128.94	76.43	105.50	65.70	85.61	73.56	117.88	64.03	48.97	30.42	59.51	71.86