Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SKA2	Gene	0	89.31	177.49	77.91	281.53	87.70	178.92	165.69	66.27	173.09	154.22	171.31	166.18	92.04	115.42	215.55	128.48	86.34	81.44	342.01	298.06	272.59	107.22	127.83	139.30	125.55	89.50	181.09	146.40	105.93
2	330137	Transcript	0	306.69	306.86	306.33	741.60	175.28	297.92	298.31	278.49	344.16	365.78	336.60	317.67	258.03	220.69	377.21	294.36	189.49	167.09	453.40	438.06	458.98	423.98	421.98	240.77	357.14	329.58	448.43	524.01	298.43
3	437036	Transcript	1	36.10	28.06	24.42	54.86	23.57	30.69	17.22	15.95	39.83	27.25	27.96	22.87	34.97	30.58	39.00	24.06	9.66	32.29	31.69	57.70	51.45	40.93	26.85	25.91	19.48	43.37	40.89	40.47	32.25
4	IG4	Intergenic	0	5.10	8.30	0.85	36.56	18.27	8.41	7.88	4.38	4.20	12.52	3.44	4.63	3.97	2.39	2.50	20.09	1.27	21.07	14.12	3.62	7.76	6.74	17.83	1.46	5.59	18.70	9.65	18.84	8.08
5	IG4_AR1	ActiveIntergenicRegion	0	5.12	8.36	0.86	36.81	18.39	8.43	7.93	4.41	4.21	12.58	3.45	4.66	4.00	2.40	2.52	20.23	1.28	21.14	14.22	3.63	7.79	6.78	17.93	1.47	5.62	18.81	9.72	18.94	8.14
6	ER1a	ExonRegion	0	82.97	79.94	72.58	326.42	74.22	70.44	65.42	67.95	70.40	91.97	73.56	87.81	67.15	49.09	84.66	105.18	40.24	78.16	142.64	104.48	117.63	106.10	127.71	46.06	89.59	96.51	121.57	140.68	63.69
7	E1_Da	KnownBoundary	1	41.11	14.54	80.50	161.34	72.80	47.54	40.39	17.72	33.95	46.54	26.54	33.34	42.77	36.98	42.85	37.41	21.97	60.88	48.55	105.36	63.37	65.73	77.96	32.24	39.06	121.49	66.94	89.10	50.38
8	E1a_E2a	KnownJunction	1	698.68	626.78	821.07	2114.21	428.85	648.45	590.23	639.79	682.62	803.66	661.92	729.78	607.78	415.35	833.55	669.36	444.33	349.33	865.89	685.33	1031.32	1030.83	1040.55	404.65	789.98	904.07	1062.28	1196.35	622.27
9	E1a_E3a	NovelJunction	1	2.89	18.13	6.85	64.28	0.00	10.67	17.51	10.10	21.90	12.78	25.94	17.53	10.38	14.65	29.70	18.59	4.50	23.12	40.46	15.46	23.83	12.20	44.92	8.67	8.30	47.59	7.60	50.91	19.44
10	E1a_E4a	NovelJunction	0	34.33	8.92	56.48	137.40	103.16	66.80	104.93	5.08	70.65	37.83	12.15	43.58	39.74	15.27	52.62	100.90	17.06	55.48	105.20	4.13	87.84	16.09	66.34	25.18	26.71	197.58	112.32	105.45	64.71
11	ER1b	ExonRegion	0	21.41	11.77	26.79	36.02	19.13	7.06	10.52	10.02	9.14	12.35	4.97	10.38	15.47	13.27	13.35	11.58	5.45	13.66	22.24	31.17	13.36	22.63	16.97	10.09	11.25	21.45	17.84	20.15	15.28
12	E1_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.47	0.00	1.36	0.00	0.00	0.00	0.00	0.00	1.17	0.00	8.09	0.00	0.00	2.48	0.00	3.05	0.00	0.00	2.09	1.80	4.99
13	E1b_E2a	KnownJunction	1	37.10	21.81	32.74	70.32	51.58	24.44	19.97	23.89	40.26	27.88	18.13	24.97	31.53	34.79	26.51	41.54	13.75	41.61	40.46	42.59	47.13	62.72	44.47	28.35	19.32	50.12	31.06	58.28	42.32
14	E1b_E3a	NovelJunction	0	8.73	9.60	1.00	0.00	0.00	0.00	0.00	0.00	0.00	3.91	1.30	1.87	1.21	0.89	16.74	3.14	1.08	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	1.85	7.60	1.80	2.51
15	E1b_E4a	NovelJunction	0	6.02	3.49	1.17	9.06	0.00	7.02	0.00	1.94	5.91	1.60	3.20	3.25	6.43	5.25	0.00	0.00	1.40	4.62	0.00	0.00	0.00	0.00	3.94	0.00	1.44	3.86	4.42	1.84	8.72
16	I1	Intron	0	1.46	3.23	0.26	1.59	0.23	1.93	0.61	0.29	2.83	2.24	1.20	1.33	0.77	1.52	6.15	2.37	2.85	2.14	10.35	2.37	5.77	0.20	0.29	1.16	0.88	0.72	1.16	1.52	0.69
17	I1_SR1	SilentIntronRegion	0	1.46	3.24	0.27	1.55	0.23	1.94	0.61	0.29	2.85	2.24	1.21	1.34	0.77	1.53	6.17	2.38	2.86	2.15	10.39	2.37	5.79	0.20	0.29	1.16	0.88	0.72	1.16	1.53	0.69
18	E2_Aa	NovelBoundary	0	0.00	9.70	0.00	0.00	0.00	1.69	0.00	0.00	4.29	0.00	1.23	0.00	0.00	1.13	8.37	0.00	3.85	0.00	8.09	0.00	10.63	0.00	0.00	0.00	0.00	1.59	0.00	2.29	0.00
19	I1_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	11.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.73	0.00	0.00	1.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER2a	ExonRegion	1	171.77	196.04	348.35	537.19	108.39	157.53	146.76	158.35	221.35	224.37	190.80	246.28	244.81	162.66	188.36	158.45	191.58	82.00	191.28	251.31	259.86	263.22	255.80	125.01	212.36	242.93	255.59	329.53	246.48
21	E2_Da	NovelBoundary	0	0.00	4.65	1.49	0.00	0.00	1.96	0.00	0.00	5.85	5.87	1.61	0.00	0.00	1.99	0.00	0.00	0.97	0.00	8.09	7.94	16.93	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00
22	E2a_E3a	KnownJunction	0	94.32	123.71	9.72	67.51	7.22	37.02	58.24	74.15	166.64	72.02	42.55	50.66	72.73	67.89	110.02	57.99	25.32	19.26	64.74	184.17	64.14	112.79	60.33	86.49	65.05	33.00	54.27	46.86	77.32
23	E2a_E4a	KnownJunction	1	49.78	50.61	13.73	58.24	0.00	60.58	21.17	13.93	70.10	41.50	60.77	33.25	57.92	43.69	77.14	19.05	9.79	41.61	32.37	99.32	93.86	37.44	19.11	39.30	27.88	58.53	73.75	43.00	39.15
24	I2	Intron	0	1.29	2.34	0.27	0.11	0.31	1.86	0.74	0.20	2.87	2.34	0.59	1.46	0.57	0.69	7.52	1.21	3.77	1.08	5.79	0.97	3.72	0.49	0.29	1.61	0.80	0.92	0.23	1.55	1.14
25	I2_SR1	SilentIntronRegion	0	0.60	3.97	0.00	0.00	0.00	0.50	0.15	0.00	3.72	2.16	0.87	0.00	0.00	0.06	1.69	0.67	1.04	0.82	9.18	0.00	5.00	0.00	0.00	2.21	0.00	0.46	0.46	0.60	0.36
26	I2_AR1	ActiveIntronRegion	0	0.50	4.42	0.18	0.00	0.00	2.02	0.80	0.00	3.58	2.87	0.25	0.26	0.27	0.65	3.85	1.68	2.68	0.81	7.43	0.21	5.01	0.57	0.00	1.17	0.60	0.20	0.25	0.51	1.44
27	E3_Aa	NovelBoundary	0	0.00	3.88	1.17	0.00	0.00	1.96	0.00	0.00	10.35	1.76	0.00	1.87	0.00	2.06	0.00	0.00	8.89	4.62	0.00	0.00	7.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER3a	ExonRegion	0	244.72	277.90	89.86	249.54	68.02	261.42	243.37	241.00	264.47	308.17	317.06	287.59	221.93	215.17	259.72	269.26	151.00	155.69	478.36	446.09	379.94	374.94	323.66	245.55	312.44	221.91	307.28	362.91	268.96
29	E3_Da	NovelBoundary	0	2.18	9.70	2.54	0.00	0.00	11.36	5.21	2.44	1.67	6.95	6.39	3.07	12.58	6.69	8.37	13.85	4.37	0.00	0.00	0.00	17.53	2.04	2.41	10.35	3.18	0.00	0.00	10.38	3.17
30	E3a_E4a	KnownJunction	1	189.05	199.04	304.68	535.13	197.04	244.79	301.41	159.00	262.90	279.26	324.86	202.65	129.67	184.37	305.56	180.84	137.31	144.10	404.62	436.65	360.51	177.36	263.39	226.40	261.10	159.34	369.90	489.93	225.19
31	I3	Intron	0	0.92	2.98	0.36	2.04	0.70	2.15	1.87	0.00	4.07	2.67	3.14	1.27	2.21	0.87	9.42	1.59	3.93	1.23	5.92	1.12	3.76	0.51	0.52	3.22	1.12	1.34	0.39	1.86	0.33
32	I3_AR1	ActiveIntronRegion	0	0.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.18	0.00	1.25	0.00	0.07	0.00	0.00	0.00	0.42	0.00	9.05	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I3_SR1	SilentIntronRegion	0	0.93	3.07	0.37	2.10	0.72	2.22	1.92	0.00	4.18	2.75	3.19	1.31	2.27	0.90	9.69	1.64	4.04	1.27	5.84	1.15	3.83	0.53	0.53	3.31	1.15	1.38	0.40	1.91	0.34
34	Ix_SR2	SilentIntronRegion	0	1.43	3.13	0.45	1.91	1.30	2.84	0.67	1.47	4.85	2.98	0.79	1.64	1.51	1.66	11.52	1.28	6.76	2.33	7.23	1.00	2.37	0.60	0.36	2.58	1.71	1.67	1.46	3.26	1.15
35	Ix_SR1	SilentIntronRegion	0	1.28	4.82	0.25	2.14	0.00	3.91	2.11	0.55	3.61	1.08	0.71	1.47	1.65	1.62	10.97	1.48	4.91	1.15	6.20	0.41	4.69	0.00	0.27	2.90	0.00	0.94	0.00	0.73	0.90
36	E4_Aa	NovelBoundary	0	0.00	19.39	0.00	0.00	0.00	1.96	0.00	0.00	1.28	3.64	1.33	3.01	2.55	2.15	0.00	7.04	9.77	0.00	8.09	3.47	3.77	0.00	2.51	5.38	0.00	1.97	0.00	4.13	0.00
37	ER4a	ExonRegion	0	80.62	194.06	71.63	286.74	95.14	200.12	184.88	53.92	189.79	158.69	184.58	175.77	85.71	122.34	244.89	128.54	89.60	81.31	386.43	333.24	304.00	88.13	116.84	153.42	121.58	78.23	188.65	133.73	100.86