Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRIM25	Gene	0	17.70	53.53	62.58	72.63	48.96	56.49	12.56	42.57	16.26	71.65	87.40	54.66	51.54	67.41	16.12	63.22	45.62	33.77	49.67	33.98	63.27	56.70	62.89	31.00	21.12	55.39	32.46	60.31	51.17
2	316881	Transcript	0	45.95	162.32	186.71	244.01	141.87	177.27	41.21	110.79	33.41	231.10	349.12	162.08	161.50	206.24	40.74	199.61	123.21	106.21	140.53	91.27	200.24	153.97	181.81	72.66	59.12	181.14	96.09	176.69	171.49
3	IG21_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG21_AR1	ActiveIntergenicRegion	0	5.53	0.98	0.04	6.57	5.09	1.67	21.18	10.94	4.06	1.87	2.68	2.25	2.71	0.96	15.18	3.81	1.77	1.76	3.35	13.86	2.82	3.57	0.00	1.96	0.41	0.00	1.01	3.95	0.81
5	IG21_SR2	SilentIntergenicRegion	0	0.19	0.00	1.12	0.00	3.52	0.00	2.96	3.74	0.33	1.10	0.39	0.00	0.53	0.03	2.31	1.27	2.65	0.00	0.53	1.82	0.04	0.00	0.00	0.00	0.25	0.00	1.08	0.19	0.00
6	ER1a	ExonRegion	0	19.61	30.49	64.17	87.97	50.58	40.79	8.66	36.05	7.23	52.72	56.78	65.37	42.76	72.97	10.79	96.03	54.44	48.34	37.28	41.73	40.88	76.41	75.25	15.72	15.33	51.49	14.56	72.38	44.86
7	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	1.40	0.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	41.23	33.45	105.94	133.51	56.44	79.50	20.31	46.63	18.73	103.46	175.51	101.02	70.47	111.62	26.11	125.15	79.86	52.01	56.65	40.85	96.67	103.46	112.68	37.98	32.20	58.62	29.07	76.74	77.98
9	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	5.72	0.00	0.00	0.00	1.88	1.36	2.95	0.00	2.04	0.00	0.00	2.75	0.00	0.00	0.00	3.61	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00
10	I1_AR1	ActiveIntronRegion	0	3.94	2.37	0.00	0.00	0.00	1.62	0.40	1.21	1.81	1.85	2.79	0.87	4.34	3.39	0.00	6.55	2.18	3.58	4.82	4.56	6.48	0.00	2.10	1.94	3.07	0.00	0.72	5.42	1.52
11	I1_SR2	SilentIntronRegion	0	1.83	2.05	0.00	0.00	0.00	1.69	0.00	0.42	0.68	2.05	0.62	0.85	0.11	0.96	0.00	0.63	0.96	1.59	0.00	1.17	3.63	0.00	0.87	1.84	0.00	0.00	1.03	1.77	0.00
12	I1_AR2	ActiveIntronRegion	0	2.29	1.97	0.77	0.20	0.00	0.62	0.92	0.90	1.69	2.68	2.73	0.85	0.46	1.55	3.09	2.76	2.75	2.44	2.97	5.07	3.03	1.10	0.00	1.38	0.44	1.43	0.29	3.51	1.22
13	I1_AR3	ActiveIntronRegion	0	1.54	0.00	0.00	0.00	0.00	1.80	1.32	0.00	0.53	0.00	0.00	0.62	0.00	0.00	7.00	0.00	0.00	0.00	0.00	2.72	0.71	0.00	0.00	0.00	0.00	3.54	0.00	1.07	0.00
14	I1_SR4	SilentIntronRegion	0	1.24	2.93	0.00	0.00	0.00	1.63	1.19	0.00	0.30	0.54	0.44	0.32	0.72	0.68	5.23	0.00	0.00	0.72	0.00	3.47	1.43	0.00	0.00	0.00	0.00	0.93	0.00	3.39	0.00
15	E2_Aa	NovelBoundary	0	2.89	0.00	1.25	9.92	0.00	5.45	0.00	0.00	0.00	5.35	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	1.92	2.27	0.00	3.35	0.00	10.20	0.00
16	ER2a	ExonRegion	0	53.03	85.30	136.96	128.20	65.28	118.82	26.37	99.40	20.64	161.12	238.27	144.29	102.38	183.39	28.82	187.75	109.87	70.79	87.41	74.57	120.56	142.89	135.22	63.23	43.76	118.31	52.50	127.18	83.80
17	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	5.55	0.00	3.29	0.00	0.00	1.57	0.00	1.13	15.95	0.00	3.33	0.00	8.09	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2a_E3a	KnownJunction	0	55.56	116.24	153.13	146.24	75.45	114.80	17.91	101.72	19.98	209.19	282.40	165.33	134.70	212.90	34.68	167.30	148.61	117.51	64.74	105.94	166.54	164.23	183.80	68.07	60.05	106.81	59.49	141.08	100.26
19	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	9.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	3.47	4.51	0.00	0.00	0.00	0.00	0.00	0.00	5.72	4.62	0.00	0.00	1.72	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	60.95	174.47	202.08	243.76	133.95	196.12	39.52	129.99	28.21	251.86	417.88	222.32	174.33	280.77	38.25	225.27	163.60	101.87	155.91	116.46	220.12	180.40	187.19	89.66	78.05	161.86	105.56	198.89	138.74
22	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.56	2.04	0.00	0.00	1.62	0.00	0.00	0.00	1.40	0.00	0.00	0.00	5.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E3a_E4a	KnownJunction	0	46.19	144.17	244.22	406.80	104.93	319.56	68.37	122.23	36.24	316.25	656.45	270.51	227.53	279.46	45.64	235.31	177.67	84.76	153.53	97.34	264.05	150.13	237.97	62.09	86.23	194.44	186.47	255.53	192.73
24	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.31	1.64	0.00	3.07	0.00	1.37	15.55	3.52	0.00	0.00	8.09	0.00	3.65	0.00	0.00	0.00	0.00	6.57	0.00	0.00	0.00
25	ER4a	ExonRegion	0	62.68	205.88	238.39	255.39	148.26	282.11	50.90	148.82	28.76	302.43	528.71	211.66	199.76	281.63	36.02	234.96	144.49	123.14	196.68	114.18	298.91	205.91	208.24	99.71	75.13	219.36	152.41	213.22	162.30
26	E4_Da	NovelBoundary	0	4.60	14.35	2.74	7.98	0.00	1.76	8.47	23.64	4.66	6.11	0.00	3.01	31.75	4.30	0.00	9.18	0.00	0.00	7.87	0.00	1.52	12.54	1.92	0.00	4.13	5.66	3.68	0.00	28.16
27	E4a_E5a	KnownJunction	0	41.41	164.62	211.50	201.67	180.53	269.03	48.06	88.93	24.54	194.61	369.78	171.26	210.40	173.35	48.04	153.30	149.69	47.52	121.39	77.16	238.74	100.93	131.69	60.17	51.45	182.39	62.17	179.23	150.71
28	I4	Intron	0	0.73	0.91	0.34	0.97	0.00	1.68	0.27	0.25	1.75	0.98	0.16	0.42	0.40	2.12	0.94	3.25	1.42	1.72	3.47	0.51	3.19	0.12	0.25	1.31	0.39	0.75	0.00	0.99	0.41
29	I4_SR1	SilentIntronRegion	0	0.73	0.91	0.34	0.98	0.00	1.68	0.27	0.25	1.76	0.98	0.16	0.42	0.40	2.12	0.94	3.26	1.42	1.72	3.48	0.51	3.20	0.12	0.25	1.32	0.39	0.75	0.00	1.00	0.41
30	E5_Aa	NovelBoundary	0	2.71	0.00	1.22	0.00	0.00	0.00	0.00	2.39	6.73	0.00	0.00	5.33	0.00	0.86	0.00	3.82	1.26	4.62	16.18	3.56	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00
31	ER5a	ExonRegion	0	46.02	207.10	239.89	234.23	137.75	212.70	39.70	119.95	28.53	242.16	416.43	190.63	191.64	215.11	33.43	167.79	142.46	102.22	118.77	95.01	245.97	159.24	194.80	73.63	62.20	206.81	157.57	214.05	207.67
32	E5_Da	NovelBoundary	0	6.84	0.00	1.30	20.71	7.37	18.99	0.00	0.00	1.22	3.36	5.16	4.13	0.00	11.61	0.00	16.98	7.41	5.39	16.18	11.83	14.24	0.00	0.00	0.00	0.00	10.73	0.00	7.91	1.39
33	E5a_E6a	KnownJunction	0	35.51	328.08	247.41	436.13	237.71	232.97	40.11	98.09	31.37	373.57	641.87	183.76	198.93	256.60	77.14	298.35	129.92	135.49	161.85	63.35	262.52	227.19	305.20	90.98	76.57	305.63	224.93	242.54	287.81
34	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.09	0.00	3.82	0.00	0.00	0.00	0.00	0.00	1.94	0.00	0.00	0.00	0.00	0.00	1.80	0.00
35	I5	Intron	0	8.99	8.91	3.64	6.55	3.85	6.93	1.78	3.89	1.68	6.78	4.46	3.09	2.04	8.18	7.01	11.66	7.62	6.63	14.50	10.88	8.27	1.59	1.31	4.81	1.67	3.57	1.67	6.32	2.83
36	I5_SR1	SilentIntronRegion	0	5.49	7.69	4.71	5.90	2.81	7.35	0.83	2.56	1.06	6.99	3.30	2.63	2.65	9.75	4.73	9.82	6.44	5.16	14.07	11.10	6.25	1.10	1.10	2.14	0.96	3.29	2.20	5.89	2.26
37	I5_AR1	ActiveIntronRegion	0	4.85	14.06	3.27	1.61	5.93	8.27	1.75	2.76	1.01	7.30	8.10	2.42	2.27	6.56	1.24	9.90	4.11	8.15	23.49	13.97	5.37	1.75	1.81	4.37	0.78	2.84	3.80	10.04	1.78
38	I5_AR2	ActiveIntronRegion	0	6.80	10.86	5.26	2.24	7.01	2.50	1.54	7.54	0.36	4.89	2.10	4.27	0.25	6.07	5.39	11.96	5.21	2.94	9.34	9.47	6.41	1.81	0.64	1.78	0.71	4.52	0.00	4.25	2.25
39	I5_SR2	SilentIntronRegion	0	11.51	8.85	2.83	8.02	3.70	7.39	2.32	4.05	2.29	6.97	5.22	3.19	2.02	7.86	8.92	12.72	8.93	7.93	14.97	10.80	9.88	1.80	1.50	6.77	2.27	3.61	1.53	6.64	3.31
40	E6a_E7a	KnownJunction	0	29.73	229.87	133.29	199.52	178.91	197.59	71.12	120.63	34.65	368.14	454.78	151.26	183.58	202.49	41.86	292.45	90.35	243.63	339.43	74.02	276.64	145.71	206.95	79.79	80.51	278.38	83.39	225.78	214.79
41	ER6a	ExonRegion	0	38.82	295.89	258.45	387.84	240.96	258.54	70.48	139.24	37.49	430.51	709.88	223.60	253.50	288.88	67.41	349.33	142.28	221.47	247.75	73.39	297.11	239.50	311.89	91.38	90.37	361.94	204.59	285.50	331.81
42	I6	Intron	0	26.90	17.27	12.49	20.50	8.54	27.52	6.73	17.26	9.17	26.61	17.58	14.21	4.53	34.08	14.17	42.60	34.86	17.75	36.55	25.36	24.92	4.87	1.44	23.92	4.31	6.24	2.62	9.32	7.86
43	I6_SR1	SilentIntronRegion	0	27.03	20.43	13.25	21.57	1.28	30.80	6.31	15.61	10.61	27.49	17.57	11.46	2.91	30.34	15.25	52.78	31.18	16.70	44.52	26.53	26.21	2.53	2.47	25.18	4.51	7.33	1.17	10.17	8.34
44	I6_AR1	ActiveIntronRegion	0	27.11	14.35	11.88	19.70	15.85	24.60	7.21	19.10	7.86	26.06	17.82	17.11	6.19	38.22	13.27	33.03	38.95	18.98	29.08	24.51	23.94	7.26	0.43	22.95	4.15	5.24	4.09	8.60	7.49
45	E7_Aa	NovelBoundary	0	20.53	44.98	16.12	0.00	0.00	13.77	2.57	26.97	19.00	28.52	41.41	9.52	4.04	25.81	9.37	68.08	57.29	56.00	40.46	21.50	10.27	12.40	0.00	22.25	5.61	10.51	0.00	22.33	23.70
46	ER7a	ExonRegion	0	57.31	188.33	147.47	163.58	96.25	174.01	48.57	161.05	49.29	202.85	270.38	141.56	167.26	240.12	47.21	200.53	107.52	147.57	180.44	153.62	213.50	191.63	187.33	101.13	53.84	199.63	65.46	172.65	170.63
47	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	7.75	0.00	4.43	3.05	7.59	2.34	1.54	0.00	13.12	0.00	2.98	8.28	4.62	0.00	7.03	6.14	0.00	0.00	2.33	0.00	0.00	0.00	4.04	4.92
48	E7a_E8a	KnownJunction	0	40.88	139.51	124.77	172.12	69.71	140.96	57.39	127.15	57.16	136.33	145.55	121.53	163.87	151.13	59.60	137.09	90.19	111.73	89.02	76.33	165.70	103.85	168.14	64.72	32.51	190.54	49.90	161.84	130.21
49	I7	Intron	0	0.00	0.00	0.00	0.00	0.00	5.32	0.00	3.57	0.00	2.80	0.00	0.80	0.84	2.34	0.00	4.81	0.96	1.24	0.00	1.78	4.60	1.16	0.00	1.39	1.85	0.00	0.00	2.10	1.73
50	I7_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	5.46	0.00	3.66	0.00	2.87	0.00	0.82	0.86	2.40	0.00	4.93	0.98	1.28	0.00	1.83	4.72	1.19	0.00	1.42	1.89	0.00	0.00	2.14	1.78
51	E8_Aa	NovelBoundary	0	8.02	0.00	2.59	0.00	0.00	3.26	0.00	0.00	6.88	5.63	0.00	2.83	1.50	5.10	9.17	2.91	7.72	9.25	0.00	3.39	2.05	0.00	0.00	2.69	0.00	0.00	0.00	4.09	2.97
52	ER8a	ExonRegion	0	45.68	139.53	215.43	209.19	125.34	121.32	29.67	130.74	47.05	177.02	170.85	120.95	155.33	211.54	22.63	122.06	131.88	89.13	110.95	91.50	176.27	156.46	156.66	78.57	56.93	163.08	63.49	153.90	168.95
53	E8_Da	NovelBoundary	0	3.01	13.77	1.25	0.00	6.34	1.57	2.92	0.00	1.40	6.47	0.00	4.76	0.00	9.66	0.00	3.75	15.33	4.62	0.00	7.86	13.88	0.00	0.00	0.00	0.00	0.00	0.00	14.06	3.66
54	E8a_E9a	KnownJunction	0	95.91	240.82	413.46	698.41	474.98	220.54	55.27	185.33	83.35	362.11	359.43	240.51	237.50	309.86	61.59	367.73	204.20	90.41	234.01	236.44	281.45	237.64	248.66	134.94	96.08	246.80	99.94	247.39	418.78
55	I8	Intron	0	2.23	4.02	1.23	2.65	3.28	3.41	0.81	2.22	2.80	5.14	1.16	1.49	0.91	5.33	3.82	8.03	8.01	3.44	2.89	4.12	2.92	1.39	0.91	2.24	0.48	1.69	0.06	7.43	1.37
56	I8_SR1	SilentIntronRegion	0	0.00	0.00	0.00	3.83	0.00	1.92	0.13	1.34	1.48	1.76	0.83	0.65	0.76	3.28	9.42	11.61	2.53	4.12	0.79	2.05	1.43	0.17	1.23	1.20	1.16	0.00	0.00	2.51	1.32
57	I8_AR1	ActiveIntronRegion	0	3.20	2.91	1.47	1.60	6.98	3.02	1.57	1.64	5.30	6.01	0.96	1.43	1.22	6.79	2.19	10.09	11.52	2.75	4.61	3.70	3.53	1.46	2.24	1.66	0.00	2.39	0.00	7.99	2.42
58	I8_SR2	SilentIntronRegion	0	2.34	6.08	1.45	2.85	1.65	3.70	1.05	2.70	2.55	5.95	1.81	1.57	1.50	5.21	3.84	7.31	6.59	4.01	2.54	3.96	3.10	2.69	1.03	2.71	0.43	1.69	0.00	7.39	1.25
59	I8_AR2	ActiveIntronRegion	0	2.63	3.49	1.31	4.00	3.27	3.99	0.45	2.47	1.50	4.99	0.66	1.79	0.43	5.35	5.02	7.64	9.49	4.08	3.21	4.13	2.39	0.60	0.00	2.40	0.80	1.58	0.20	9.26	1.35
60	E9_Aa	NovelBoundary	0	8.79	13.86	0.00	0.00	6.04	3.45	4.81	7.46	7.58	17.10	0.00	0.00	0.00	5.52	0.00	3.37	15.33	0.00	0.00	0.00	7.54	0.00	0.00	3.05	3.18	1.76	0.00	6.34	3.43
61	ER9a	ExonRegion	0	10.64	35.69	37.53	43.69	34.84	34.16	8.10	27.52	14.76	44.42	40.08	29.81	31.57	34.20	13.38	32.93	27.54	18.04	33.28	19.64	38.42	31.94	39.15	23.40	13.90	33.24	22.00	35.74	33.38
62	IG20_AR4	ActiveIntergenicRegion	0	0.00	4.89	0.72	1.21	0.00	0.70	0.68	0.31	3.70	0.98	1.00	0.83	0.22	2.67	0.78	3.31	4.03	1.68	3.24	4.19	2.65	0.00	1.12	2.18	0.24	1.84	3.71	2.48	1.58