Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ATP5G1	Gene	0	1326.88	484.43	753.56	2278.22	1855.77	606.79	2287.10	3848.10	888.52	548.07	406.11	844.95	877.88	363.92	1410.27	471.38	337.46	407.49	1339.87	446.76	675.69	1716.75	1198.88	391.03	533.85	597.87	442.79	988.22	778.95
2	355938	Transcript	0	4225.66	1642.53	1912.92	11581.16	11747.57	1928.89	7327.84	8343.10	2055.60	1958.89	1566.04	2336.64	2440.33	890.98	4143.26	1973.97	552.78	1535.25	5928.41	1179.62	1953.13	4844.33	3600.60	922.41	1609.10	1979.07	1828.62	3882.66	1755.62
3	393366	Transcript	1	135.58	27.39	371.30	388.36	149.63	77.24	338.81	414.21	133.98	32.36	34.40	97.35	70.77	13.70	180.45	39.36	20.63	42.52	129.77	26.47	143.77	631.11	310.68	26.18	84.37	107.64	80.89	83.32	187.61
4	IG42_AR1	ActiveIntergenicRegion	0	1.86	3.02	9.67	24.87	7.06	5.57	20.60	10.63	5.13	4.18	2.07	7.48	1.18	2.31	17.60	8.42	4.61	4.85	4.00	8.78	1.66	4.31	1.39	2.16	9.31	11.34	1.24	3.46	2.64
5	ER1a	ExonRegion	0	1809.25	531.74	952.90	3939.00	4322.17	757.99	2861.49	3573.54	891.61	733.51	613.71	974.51	1101.45	352.54	1433.45	665.17	260.79	603.99	1873.04	427.27	782.59	2046.17	1434.87	323.22	571.21	806.33	594.92	1450.62	742.29
6	E1_Da	KnownBoundary	0	117.44	4.56	31.72	121.43	19.45	29.16	230.46	142.88	100.04	46.02	6.74	44.46	34.93	7.07	31.09	27.77	14.65	27.74	24.28	23.49	55.99	157.18	107.86	9.63	34.32	46.65	17.79	7.01	32.95
7	E1a_E2a	KnownJunction	0	4225.66	1642.53	1912.92	11581.16	11747.57	1928.89	7327.84	8343.10	2055.60	1958.89	1566.04	2336.64	2440.33	890.98	4143.26	1973.97	552.78	1535.25	5928.41	1179.62	1953.13	4844.33	3600.60	922.41	1609.10	1979.07	1828.62	3882.66	1755.62
8	E1a_E3a	NovelJunction	0	10.32	0.00	6.78	44.00	5.75	7.37	9.38	8.51	3.17	9.11	6.77	1.54	1.43	3.94	65.97	6.73	5.67	0.00	24.05	3.64	4.85	11.86	15.22	2.75	0.00	2.19	35.43	22.96	0.00
9	E1a_E4a	NovelJunction	0	5.43	0.00	0.00	0.00	0.00	1.65	10.81	2.49	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	24.05	0.00	0.00	2.19	0.00	0.00	1.59	1.97	0.00	0.00	4.82
10	ER1b	ExonRegion	1	204.09	29.28	277.54	523.06	134.64	114.51	491.15	561.63	178.56	51.38	45.55	106.85	79.80	14.63	218.58	68.47	24.94	75.01	154.33	38.47	205.95	907.27	425.85	25.57	111.26	144.99	99.90	77.64	170.44
11	E1_Db	NovelBoundary	0	0.00	0.00	3.74	0.00	6.34	0.00	0.00	0.00	0.00	0.00	0.00	4.97	0.00	3.66	8.77	0.00	4.86	0.00	8.09	0.00	1.76	0.00	0.00	0.00	0.00	0.00	2.24	6.52	0.00
12	E1b_E2a	KnownJunction	0	67.07	25.50	465.06	253.65	164.61	39.98	186.46	266.79	89.41	13.34	23.25	87.86	61.75	12.76	142.31	10.25	16.32	10.02	105.20	14.47	81.58	354.95	195.52	26.80	57.47	70.29	61.87	89.01	204.78
13	E1b_E3a	NovelJunction	0	0.00	0.00	1.02	21.57	0.00	0.00	0.00	7.12	0.00	0.00	0.00	3.25	0.00	0.00	0.00	0.00	0.00	0.00	7.87	0.00	3.85	0.00	2.51	0.00	3.79	1.89	26.24	0.00	0.00
14	I1	Intron	0	7.46	2.97	3.08	13.22	4.50	5.21	5.16	5.28	2.75	3.25	1.34	3.53	0.13	3.44	7.80	6.32	6.42	6.18	7.52	5.28	4.38	2.22	0.74	1.76	2.20	1.45	1.31	0.83	1.17
15	I1_AR1	ActiveIntronRegion	0	7.28	3.16	3.22	12.45	5.12	4.17	5.12	4.92	2.52	2.87	1.16	3.78	0.15	3.60	8.38	6.01	6.30	6.21	8.04	5.60	3.29	2.36	0.69	2.00	2.20	1.65	1.26	0.95	1.33
16	I1_SR1	SilentIntronRegion	0	9.76	1.76	2.33	20.85	0.00	14.03	6.08	8.76	4.97	6.71	2.93	1.92	0.00	2.47	4.04	9.51	8.01	6.62	4.19	3.33	13.71	1.30	1.24	0.00	2.44	0.00	1.90	0.00	0.00
17	E2_Aa	NovelBoundary	0	13.39	0.00	2.42	8.63	0.00	1.61	10.87	8.41	0.00	7.59	1.27	6.75	0.00	7.69	8.37	3.21	7.02	9.25	16.18	8.10	6.58	0.00	0.00	16.15	0.00	0.00	0.00	0.00	1.45
18	ER2a	ExonRegion	0	2957.24	1169.29	2489.25	7733.13	6427.03	1922.65	6380.18	7847.80	1991.44	1755.96	1265.70	2284.19	1884.68	860.84	3220.24	1522.55	882.04	877.37	3380.51	889.17	2034.23	3563.15	3816.56	756.35	1418.94	1512.89	1587.18	2870.06	1988.23
19	E2_Da	NovelBoundary	0	10.79	4.46	1.42	0.00	29.47	2.95	5.03	18.02	2.98	5.47	4.52	5.75	0.00	2.48	8.37	6.96	20.69	4.62	8.09	0.00	2.01	0.00	3.74	0.00	1.48	4.21	0.00	6.11	10.07
20	E2a_E3a	KnownJunction	0	512.76	163.94	1274.10	1737.83	934.48	366.45	1483.06	1965.30	858.27	353.92	303.31	1022.33	741.85	330.44	543.54	157.20	631.57	121.75	638.86	113.22	334.44	590.36	941.26	204.51	338.01	474.85	468.80	791.29	1028.11
21	E2a_E4a	NovelJunction	1	0.00	0.00	11.19	0.00	16.36	4.37	83.71	6.12	28.59	6.55	1.49	11.57	1.66	5.67	0.00	0.00	6.64	0.00	0.00	0.00	11.39	1.85	14.87	5.26	4.21	4.29	0.00	6.16	6.90
22	I2	Intron	0	21.44	6.98	5.77	11.62	5.85	12.01	16.19	22.31	10.10	10.88	3.44	8.61	1.73	14.53	17.03	15.91	23.87	17.75	14.63	7.85	18.99	2.16	2.29	8.33	7.35	1.66	2.32	6.09	4.66
23	I2_AR1	ActiveIntronRegion	0	21.50	7.00	5.79	11.65	5.86	12.04	16.23	22.37	10.13	10.91	3.45	8.63	1.74	14.57	17.08	15.96	23.94	17.80	14.67	7.87	19.04	2.16	2.30	8.36	7.37	1.67	2.33	6.10	4.67
24	E3_Aa	NovelBoundary	0	17.58	4.17	12.66	37.10	20.63	14.62	15.05	32.40	7.43	8.95	5.73	11.17	3.06	19.39	39.66	27.39	40.79	0.00	0.00	7.11	23.71	1.99	4.63	2.39	7.12	0.00	2.24	16.62	2.84
25	ER3a	ExonRegion	0	1639.98	325.75	522.18	1173.96	539.03	372.45	1269.59	3603.91	797.44	265.75	183.41	584.54	685.70	300.36	735.98	178.45	287.91	211.62	638.90	343.48	479.91	2834.60	491.99	347.96	379.49	416.72	227.67	450.58	691.20
26	E3_Da	NovelBoundary	0	39.58	23.85	9.79	8.20	0.00	33.26	19.74	47.73	16.26	8.03	3.23	13.61	5.00	18.35	22.72	44.29	33.09	18.49	8.09	22.00	35.34	8.95	2.51	23.51	12.01	0.00	4.77	9.17	3.60
27	E3a_E4a	KnownJunction	0	3369.19	735.66	128.16	1705.69	555.59	940.43	2012.36	7064.62	1560.05	380.96	239.16	556.89	954.76	518.02	904.71	410.42	174.94	372.45	1397.97	839.73	1079.41	4672.90	711.56	731.84	760.62	648.99	123.70	424.33	740.82
28	I3	Intron	0	27.52	9.62	7.24	8.85	8.44	17.48	25.39	38.88	14.62	11.77	4.85	14.47	6.64	15.87	33.60	21.89	33.92	16.38	20.51	13.91	19.02	5.12	4.69	14.88	9.53	3.30	4.07	10.87	8.59
29	I3_AR1	ActiveIntronRegion	0	0.00	2.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.47	11.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I3_SR1	SilentIntronRegion	1	25.90	8.41	5.01	30.25	2.05	10.38	33.49	36.75	15.18	7.59	2.76	15.74	14.04	11.03	35.83	27.04	23.88	16.52	9.30	17.67	18.25	4.72	9.34	11.02	7.30	4.39	0.00	7.97	10.41
31	I3_AR2	ActiveIntronRegion	0	41.19	7.01	10.25	9.49	11.98	28.76	55.41	43.79	24.20	14.40	10.00	22.43	20.75	16.20	29.37	33.24	50.71	16.60	19.82	17.85	29.03	5.65	20.77	22.91	10.78	11.94	0.69	25.07	19.66
32	I3_SR2	SilentIntronRegion	0	40.42	12.24	11.48	0.81	14.09	25.61	32.35	53.99	23.28	16.96	6.76	20.19	7.15	21.54	58.33	31.65	47.00	22.44	28.71	23.56	23.92	11.09	2.78	18.17	15.84	1.97	11.82	11.90	11.62
33	I3_AR3	ActiveIntronRegion	1	27.04	11.37	13.64	7.31	14.94	21.68	40.47	85.82	25.75	10.66	7.14	21.31	3.60	27.42	57.73	30.76	38.30	19.94	22.98	9.08	35.33	7.63	5.01	18.86	14.40	3.75	1.41	11.66	9.40
34	I3_AR4	ActiveIntronRegion	1	37.66	10.18	11.59	3.58	13.48	29.16	26.05	60.03	16.87	14.07	1.19	18.87	1.38	22.05	26.03	24.07	45.22	20.28	15.71	20.01	31.35	5.23	2.77	23.07	11.29	2.22	0.00	7.77	5.50
35	I3_AR5	ActiveIntronRegion	0	17.45	11.75	3.43	7.95	6.39	11.31	9.55	22.69	5.40	13.09	6.56	7.80	1.27	16.19	24.53	11.14	30.91	12.87	27.99	3.21	10.48	0.96	0.00	13.33	7.02	2.58	5.08	13.36	5.38
36	E4_Aa	NovelBoundary	0	21.29	13.86	12.46	39.04	7.22	19.34	32.10	58.52	25.46	19.33	8.86	11.05	8.02	20.47	33.88	12.47	55.78	27.74	32.37	18.52	32.45	9.33	2.02	12.20	14.51	2.19	22.41	20.53	12.28
37	ER4a	ExonRegion	0	1686.69	740.06	579.36	907.83	1084.59	959.15	3790.90	5477.98	1306.77	881.43	636.14	1401.92	1375.99	562.39	2175.32	788.89	538.51	666.57	2169.87	695.40	1073.78	1825.41	1988.00	554.62	755.36	927.53	681.12	1576.98	1229.39
38	E4_Da	NovelBoundary	0	42.88	28.60	13.88	18.98	13.85	15.35	33.30	35.93	19.09	9.79	0.00	24.28	7.16	25.41	25.51	29.38	67.82	4.62	24.28	22.66	30.60	7.00	6.94	13.70	7.27	10.77	4.87	8.13	3.43
39	E4a_E5a	KnownJunction	0	1230.08	530.71	2378.23	3563.23	5096.69	484.81	2270.51	4191.03	1139.41	401.85	194.90	708.57	781.46	329.40	1703.78	269.35	421.15	396.21	1689.98	441.61	419.71	1179.75	769.77	543.78	494.29	571.14	478.29	1188.21	744.29
40	I4	Intron	1	52.17	14.14	6.14	18.00	5.66	13.54	26.09	57.63	20.69	10.88	2.99	18.80	5.13	20.46	48.75	37.33	37.20	10.54	14.19	21.08	25.35	10.10	1.75	16.21	10.22	6.07	1.77	6.30	4.13
41	I4_AR1	ActiveIntronRegion	1	52.57	14.24	6.18	18.14	5.70	13.65	26.29	58.06	20.85	10.96	3.01	18.94	5.17	20.61	49.10	37.60	37.48	10.63	14.30	21.23	25.54	10.18	1.76	16.33	10.29	6.12	1.78	6.35	4.16
42	E5_Aa	NovelBoundary	0	34.03	4.85	6.23	8.41	0.00	14.12	12.47	54.74	32.89	11.02	1.30	11.90	1.62	12.08	85.91	36.80	21.81	10.02	24.28	13.98	31.65	4.47	2.46	10.95	7.96	12.06	4.77	4.58	4.52
43	ER5a	ExonRegion	0	789.40	311.54	698.77	2750.72	1884.54	224.49	921.87	2822.26	555.92	216.00	166.64	359.30	509.05	226.80	993.98	158.76	187.13	215.02	694.16	315.75	235.52	984.39	401.56	324.92	334.93	277.47	138.22	448.65	371.39
44	IG43_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	IG43_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.33	0.00	0.38	0.00	0.35	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	IG43_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.33	0.00	1.24	0.00	0.91	0.80	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	IG43_SR2	SilentIntergenicRegion	0	0.58	0.00	0.00	0.00	0.00	1.12	0.00	1.51	0.46	2.21	0.32	1.44	0.00	0.68	3.74	4.74	4.75	0.53	0.00	0.00	0.78	0.00	0.00	0.00	0.78	2.14	0.00	0.00	1.46
48	IG43_AR7	ActiveIntergenicRegion	0	2.68	1.40	2.67	0.00	0.00	2.40	0.99	1.00	0.73	1.73	0.39	1.55	1.54	1.47	0.50	0.81	3.82	1.29	0.00	0.64	2.99	0.98	0.00	0.94	1.26	3.43	2.20	0.36	3.57
49	IG43_SR4	SilentIntergenicRegion	0	3.29	0.00	3.39	0.00	0.00	0.00	0.64	0.00	0.00	2.50	0.00	1.12	0.74	0.07	0.00	0.00	1.29	0.00	0.00	1.47	0.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.02
50	IG43_AR8	ActiveIntergenicRegion	0	0.71	0.00	1.50	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	1.30	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00