Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	VAMP2	Gene	0	170.45	147.71	259.04	180.27	65.11	208.64	86.41	68.33	261.89	314.23	216.85	101.78	126.22	344.65	259.86	312.03	447.41	216.83	82.16	108.48	106.65	146.31	153.13	528.46	236.55	272.93	122.45	240.06	171.59
2	404970	Transcript	0	67.52	21.21	27.28	29.10	6.58	30.98	12.61	20.76	27.25	31.31	12.78	14.72	6.46	79.44	80.03	73.05	181.35	42.54	10.55	33.30	11.92	11.77	5.06	65.95	31.80	21.06	3.22	24.75	10.26
3	316509	Transcript	0	146.23	174.96	323.07	165.65	67.75	216.00	76.80	57.83	248.63	335.16	255.48	129.03	128.67	371.52	302.50	350.97	466.29	231.82	106.57	98.88	107.34	153.89	145.56	689.51	281.99	327.60	152.96	289.50	217.48
4	498285	Transcript	0	0.07	0.00	0.04	0.00	0.00	0.09	0.00	0.00	0.04	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.06	0.00	0.10	0.05	0.00	0.00	0.00
5	481878	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	488857	Transcript	0	4.63	0.14	2.90	0.42	3.32	0.40	0.70	0.22	0.72	0.86	1.74	0.53	0.89	6.02	1.10	4.32	4.32	4.90	0.00	1.59	0.34	3.40	4.66	5.23	0.34	1.20	0.11	0.79	1.20
7	IG33_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	2.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.00	0.00	2.12	0.00	0.00	0.88	0.00	0.00	0.00	4.60	0.00	2.55	0.83	0.02	0.00	1.58	0.00	2.66	0.00	0.00	0.00	0.00	1.15	0.00	2.73	1.00	0.00	0.00	0.86
9	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2_Aa	NovelBoundary	0	11.80	0.00	0.00	0.00	34.63	0.00	5.26	0.00	0.00	9.51	3.13	0.00	3.15	4.59	8.37	22.03	1.26	10.02	0.00	0.00	5.82	4.42	6.99	3.05	1.78	2.19	0.00	4.54	1.68
12	E2_Ab	NovelBoundary	0	3.01	21.52	8.99	31.28	6.78	5.83	0.00	0.00	9.74	12.06	9.65	1.54	3.53	2.50	0.00	47.12	11.41	55.48	40.46	3.72	6.06	11.72	15.02	5.56	1.93	8.50	2.53	13.43	3.33
13	ER2a	ExonRegion	0	34.45	9.15	24.36	136.59	45.01	12.52	13.25	2.63	25.48	45.22	21.68	11.66	29.09	16.62	38.60	121.84	54.27	53.02	16.81	19.57	20.17	48.55	53.47	25.58	19.60	57.98	18.38	66.13	26.60
14	E2_Ac	KnownBoundary	0	147.58	43.34	117.22	650.53	195.56	63.54	77.53	28.32	106.98	211.15	54.76	50.39	105.53	80.74	110.22	502.67	209.27	179.55	40.46	89.56	94.94	202.98	243.00	135.00	95.51	237.44	96.51	276.06	89.24
15	ER2b	ExonRegion	0	99.27	41.06	98.88	520.11	123.60	47.77	64.25	19.10	75.07	161.34	45.82	37.57	83.79	67.58	138.62	390.21	180.81	213.22	41.86	76.24	74.35	161.57	178.11	101.51	79.06	180.05	65.36	203.55	87.07
16	ER2c	ExonRegion	0	86.37	40.82	220.01	780.96	132.93	64.05	82.38	21.31	77.27	172.53	50.82	48.51	123.12	101.02	169.78	323.23	274.43	180.98	23.22	89.11	58.01	156.04	172.55	112.58	96.69	253.91	82.79	199.11	144.11
17	E2_Da	KnownBoundary	0	2.71	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.27	0.00	1.86	0.00	0.00	6.57	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	1.89	0.00
18	E2a_E3a	KnownJunction	0	39.23	33.84	294.07	741.55	113.77	40.32	35.13	22.10	52.93	99.38	49.44	31.05	108.27	104.07	109.63	99.75	224.01	79.37	8.09	47.22	12.67	59.17	86.88	84.28	55.54	211.35	47.01	118.53	142.49
19	ER2d	ExonRegion	0	6.25	0.27	3.21	0.84	0.00	0.79	1.39	0.45	0.16	1.71	0.31	1.06	0.59	5.60	2.19	4.82	4.06	4.67	0.00	3.17	0.67	1.89	1.84	4.96	0.68	2.40	0.22	1.58	0.72
20	E2_Db	NovelBoundary	0	17.70	3.49	9.92	0.00	0.00	5.29	2.57	0.00	0.00	0.00	4.56	3.37	0.00	12.08	7.37	6.66	7.74	4.62	0.00	0.00	1.48	0.00	0.00	8.19	1.89	4.38	0.00	6.25	0.00
21	E2b_E3a	KnownJunction	0	3.01	0.00	2.59	0.00	6.63	0.00	0.00	0.00	1.28	0.00	3.16	0.00	1.18	6.45	0.00	3.82	4.59	5.14	0.00	0.00	0.00	4.91	7.49	5.50	0.00	0.00	0.00	0.00	1.68
22	I2	Intron	0	1.48	0.00	0.00	0.00	0.00	0.00	0.00	1.27	1.55	1.00	0.00	0.00	0.00	0.63	0.00	3.42	0.00	3.98	0.00	0.00	0.00	0.00	0.00	1.48	0.99	0.00	0.00	0.00	0.00
23	I2_SR1	SilentIntronRegion	0	1.56	0.00	0.00	0.00	0.00	0.00	0.00	1.32	1.64	1.05	0.00	0.00	0.00	0.66	0.00	3.62	0.00	4.21	0.00	0.00	0.00	0.00	0.00	1.57	1.02	0.00	0.00	0.00	0.00
24	E3_Aa	NovelBoundary	0	8.73	0.00	2.74	0.00	0.00	1.46	0.00	0.00	0.00	5.63	2.91	5.45	1.43	7.18	0.00	7.19	10.29	0.00	0.00	0.00	0.00	0.00	0.00	8.73	5.27	7.98	0.00	6.52	3.63
25	ER3a	ExonRegion	0	118.72	65.48	169.08	221.43	49.57	67.40	53.63	37.45	75.12	102.88	90.64	47.40	86.78	147.14	87.16	123.78	157.86	116.45	31.98	86.76	41.52	149.58	66.62	204.06	91.18	120.91	42.59	118.40	92.52
26	E3_Da	NovelBoundary	0	5.84	0.00	8.75	0.00	0.00	0.00	0.00	2.34	1.55	2.04	0.00	0.00	0.00	7.11	18.34	6.96	16.59	13.87	0.00	0.00	1.80	2.29	0.00	14.18	5.49	1.76	0.00	1.93	0.00
27	E3a_E4a	KnownJunction	0	195.01	213.19	248.80	137.18	135.43	211.52	115.23	91.42	260.80	306.74	211.48	123.64	202.34	331.26	252.34	517.13	420.97	266.49	89.02	147.78	149.13	282.37	150.75	423.91	199.09	301.60	100.49	311.29	191.81
28	I3	Intron	0	19.74	1.70	9.20	6.07	1.55	4.80	3.41	2.73	3.50	6.42	2.27	5.60	1.37	18.05	15.76	13.77	41.54	13.01	2.70	6.46	2.26	6.49	2.10	12.52	8.47	6.49	1.36	4.66	4.46
29	I3_SR1	SilentIntronRegion	0	19.94	1.72	9.30	6.13	1.57	4.85	3.45	2.76	3.54	6.48	2.29	5.66	1.39	18.24	15.92	13.90	41.97	13.13	2.73	6.53	2.29	6.55	2.13	12.64	8.56	6.55	1.37	4.71	4.50
30	E4_Aa	NovelBoundary	0	36.98	0.00	6.33	8.63	7.07	19.99	2.75	6.92	11.79	15.66	10.25	4.82	7.90	21.87	26.71	14.69	68.83	23.12	0.00	6.95	7.46	4.81	0.00	13.58	15.84	8.37	0.00	15.01	3.73
31	ER4a	ExonRegion	0	326.44	292.54	321.39	229.54	85.47	499.83	348.57	197.30	555.78	697.82	466.17	240.91	403.38	767.61	399.30	621.46	961.06	482.31	141.33	265.30	283.64	368.61	491.53	762.20	440.17	1003.50	280.78	756.58	424.40
32	E4_Da	NovelBoundary	0	20.06	0.00	5.78	0.00	0.00	10.28	0.00	2.54	1.55	4.95	0.00	0.00	0.00	6.29	0.00	7.27	13.26	4.62	8.09	3.31	3.77	1.90	0.00	7.36	8.41	4.21	0.00	8.81	3.40
33	E4a_E5a	KnownJunction	0	564.20	436.47	550.17	565.98	227.10	833.61	518.42	314.52	975.45	847.33	609.03	322.25	493.81	1027.34	496.31	667.53	1041.46	582.17	250.87	351.06	469.61	687.89	460.68	1452.02	841.70	1137.70	318.91	577.82	417.62
34	I4	Intron	0	3.95	0.00	0.00	0.00	0.00	4.22	2.48	0.00	0.69	0.89	2.93	0.76	0.00	0.56	5.67	3.05	0.00	4.73	1.96	1.69	0.88	0.00	0.00	3.97	5.27	0.97	0.00	3.00	0.82
35	I4_SR1	SilentIntronRegion	0	4.10	0.00	0.00	0.00	0.00	4.38	2.57	0.00	0.72	0.92	3.03	0.77	0.00	0.58	5.88	3.16	0.00	4.88	2.04	1.76	0.91	0.00	0.00	4.11	5.47	1.00	0.00	3.12	0.86
36	E5_Aa	NovelBoundary	0	8.02	4.27	2.49	0.00	0.00	7.37	2.57	0.00	8.19	9.19	2.59	1.81	0.00	5.98	24.52	6.96	20.03	9.25	0.00	4.13	3.65	3.60	0.00	9.93	8.98	0.00	2.48	0.00	3.30
37	ER5a	ExonRegion	0	545.60	472.08	671.19	596.68	238.83	716.18	329.07	307.92	818.64	923.24	653.60	288.24	466.60	1130.06	487.79	689.53	939.37	571.87	244.66	409.33	362.19	618.83	351.50	1504.69	841.35	814.04	269.59	514.43	394.03
38	E5_Da	KnownBoundary	0	160.97	31.80	50.10	65.35	5.75	119.75	31.12	25.98	37.12	65.43	34.58	22.14	8.98	163.23	191.35	185.82	358.24	89.26	40.46	96.84	30.56	9.33	12.21	158.87	54.52	19.14	4.08	25.52	24.83
39	E5a_E5b	KnownJunction	0	336.10	449.66	500.86	482.29	250.53	567.99	229.95	229.92	680.28	888.91	651.26	223.52	380.29	896.46	418.97	537.63	451.92	428.06	234.68	275.64	323.09	543.20	330.22	1415.00	636.81	695.30	196.45	557.78	333.01
40	ER5b	ExonRegion	0	171.76	49.00	68.15	75.22	17.21	158.59	53.29	34.28	60.21	113.77	50.48	31.01	24.52	212.24	241.12	252.51	518.22	116.13	39.62	112.06	45.74	25.26	18.19	200.57	103.75	51.14	10.97	66.76	36.11
41	E5_Db	KnownBoundary	0	231.16	18.23	52.62	99.00	57.03	247.82	99.21	50.66	124.09	175.04	70.55	46.35	18.50	258.19	315.52	354.72	591.79	193.03	32.37	102.63	76.53	41.86	11.08	282.63	155.63	111.10	17.25	75.26	60.15
42	ER5c	ExonRegion	0	202.55	63.62	79.72	87.29	19.73	92.07	37.84	62.27	81.76	89.32	38.35	40.29	18.54	238.29	240.08	217.58	544.05	124.96	31.65	99.89	35.77	35.30	14.02	197.84	92.68	62.17	9.67	74.25	29.93
43	E5_Ab	KnownBoundary	0	182.38	74.85	58.72	93.39	21.96	45.50	18.59	51.56	61.21	59.04	32.39	23.92	11.91	174.77	212.08	152.31	317.40	139.09	24.28	103.70	24.19	30.77	15.86	220.90	63.34	52.83	4.87	52.79	17.70
44	ER5d	ExonRegion	0	417.19	399.12	626.09	471.39	211.05	501.36	243.94	224.15	654.00	983.13	539.30	271.54	344.29	1001.42	543.80	630.30	1069.36	541.74	164.24	266.31	280.81	448.15	374.90	1119.30	440.98	587.19	215.17	616.78	388.30
45	E5_Dc	KnownBoundary	0	392.19	335.45	752.75	689.35	213.98	552.42	262.10	179.41	837.72	1054.64	422.42	280.27	389.65	977.28	595.17	709.30	1475.19	510.38	178.03	241.65	306.96	370.80	430.89	883.65	366.31	720.66	303.06	965.62	472.56
46	ER5e	ExonRegion	0	326.54	310.45	598.70	392.48	156.61	472.11	157.70	131.26	787.16	776.50	527.19	177.50	282.10	653.99	462.46	580.61	650.25	446.14	161.53	183.29	254.23	300.23	422.34	1122.85	515.53	450.88	301.21	421.94	348.44
47	E5_Dd	KnownBoundary	0	77.62	54.39	114.16	120.79	67.35	108.16	27.12	12.94	57.80	133.66	78.14	38.70	54.07	121.37	91.89	99.37	105.37	116.49	56.65	48.30	57.88	57.17	82.99	241.06	109.60	67.59	95.87	130.48	102.54
48	ER5f	ExonRegion	0	146.23	174.96	323.07	165.65	67.75	216.00	76.80	57.83	248.63	335.16	255.48	129.03	128.67	371.52	302.50	350.97	466.29	231.82	106.57	98.88	107.34	153.89	145.56	689.51	281.99	327.60	152.96	289.50	217.48
49	Ix_SR4	SilentIntronRegion	0	1.30	0.00	0.29	0.00	0.00	1.66	0.00	0.00	0.00	1.35	0.00	1.86	1.37	1.41	0.00	2.53	0.00	3.69	0.00	0.00	2.72	2.69	0.00	3.88	2.08	0.00	0.00	0.00	0.00
50	Ix_SR3	SilentIntronRegion	0	2.14	0.00	1.12	0.00	0.00	1.37	0.00	0.00	0.00	2.89	0.00	0.49	0.00	2.30	0.00	0.00	0.00	1.82	1.51	0.00	1.43	0.00	1.81	0.00	1.05	0.00	0.00	0.00	0.00
51	Ix_SR2	SilentIntronRegion	0	2.17	0.00	0.00	0.00	3.28	1.59	1.06	0.00	0.30	0.36	0.00	0.50	1.09	0.68	1.47	2.16	0.00	0.93	1.67	0.00	0.34	1.47	3.31	6.34	0.56	2.42	0.00	0.88	0.00
52	Ix_AR1	ActiveIntronRegion	0	1.36	1.11	1.54	0.83	1.69	2.42	7.44	1.27	1.75	1.83	0.55	0.77	1.12	2.46	0.28	3.11	1.89	1.78	1.11	0.64	0.82	1.62	1.25	4.35	2.38	2.60	0.00	0.79	1.39
53	Ix	Intron	0	5.57	0.00	1.89	0.00	0.67	1.41	0.41	0.19	0.61	0.59	0.81	0.82	0.33	2.48	0.69	2.46	2.60	3.05	1.64	0.65	1.12	0.62	1.05	3.31	0.98	1.02	0.50	0.33	0.30
54	Ix_SR3	SilentIntronRegion	0	2.63	0.00	1.27	0.00	0.00	1.68	0.00	0.00	0.68	0.59	0.24	1.39	0.39	1.84	1.12	0.95	0.67	2.63	0.65	1.12	0.86	0.00	0.00	2.56	0.52	0.46	0.37	0.00	0.00
55	Ix_AR3	ActiveIntronRegion	0	3.57	0.00	1.82	0.00	0.55	1.41	0.46	0.00	0.34	0.49	1.35	0.69	0.59	2.21	0.62	2.65	2.96	2.37	1.81	0.23	1.87	0.34	0.89	3.43	1.17	0.89	0.00	0.37	0.61
56	Ix_SR2	SilentIntronRegion	0	3.19	0.00	0.78	0.00	0.00	1.80	0.00	0.00	0.23	0.94	0.00	0.81	0.00	5.65	0.00	0.52	2.31	3.32	1.62	0.00	1.41	3.93	0.77	5.13	0.00	0.58	0.00	0.00	0.00
57	Ix_AR2	ActiveIntronRegion	0	5.01	0.00	2.60	0.00	0.00	0.54	1.43	0.00	0.44	0.00	1.39	0.96	0.00	4.27	0.00	0.97	2.43	1.85	1.52	0.77	0.00	1.21	0.70	2.35	0.85	0.61	0.71	0.00	0.00
58	Ix_AR1	ActiveIntronRegion	0	10.36	0.00	2.43	0.00	1.69	1.76	0.46	0.64	1.16	1.00	0.82	0.78	0.30	2.52	1.06	4.69	3.53	4.35	2.21	1.09	1.12	0.62	1.82	4.13	1.32	1.99	1.27	0.38	0.38
59	ER6a	ExonRegion	0	0.07	0.00	0.04	0.00	0.00	0.09	0.00	0.00	0.04	0.34	0.00	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.06	0.00	0.10	0.05	0.00	0.00	0.00