Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C17orf87	Gene	0	20.19	412.34	288.33	52.39	20.73	275.31	91.80	44.43	161.86	212.17	137.25	21.47	80.18	73.34	901.52	817.96	769.11	115.87	21.03	397.15	172.14	277.33	47.97	570.45	533.67	787.96	232.96	185.35	179.93
2	399594	Transcript	0	8.76	37.84	42.78	13.87	10.83	14.74	16.86	5.34	14.23	18.19	5.00	2.33	14.64	10.36	90.51	33.28	87.20	28.36	9.23	56.04	16.84	33.64	11.63	63.18	39.72	114.09	20.39	16.97	8.91
3	399600	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	399592	Transcript	0	4.22	5.95	0.00	3.32	5.13	3.51	2.34	2.77	4.10	5.69	1.79	0.57	1.05	1.73	17.96	4.42	1.02	4.47	6.67	3.25	4.05	1.05	1.68	1.99	2.49	10.38	2.12	7.56	1.24
5	315768	Transcript	0	7.00	206.75	148.20	16.66	7.26	124.35	34.64	18.79	97.02	99.58	64.96	10.71	39.02	34.98	508.91	333.86	375.46	49.64	8.96	135.06	84.21	120.71	23.09	312.01	279.49	425.46	114.10	104.72	89.24
6	ER1a	ExonRegion	0	9.65	37.78	28.61	14.63	22.42	10.31	9.07	0.92	1.69	10.83	20.23	2.47	9.09	8.16	47.61	96.17	63.11	27.29	2.26	109.62	9.27	39.66	6.33	31.19	42.88	130.45	31.14	26.08	28.19
7	ER1b	ExonRegion	0	28.59	271.31	589.28	188.06	110.39	193.73	121.67	34.89	74.68	210.27	114.76	27.49	102.54	57.62	479.70	1450.30	1178.59	140.11	24.64	487.44	117.47	347.76	66.56	248.76	385.78	837.19	267.40	218.63	237.97
8	E1_Da	NovelBoundary	0	0.00	0.00	11.98	0.00	0.00	1.73	4.98	1.89	1.89	2.04	0.00	1.30	0.00	1.33	26.71	6.04	30.27	9.25	0.00	11.91	5.25	0.00	2.36	2.75	1.48	9.96	2.24	2.07	0.00
9	E1a_E2b	KnownJunction	0	2.18	142.32	224.53	39.90	24.76	73.44	29.58	30.01	63.40	60.40	47.10	6.54	63.18	21.98	253.93	382.11	613.40	61.65	16.18	197.15	43.12	103.65	18.71	192.25	200.19	464.33	127.62	95.39	201.22
10	E1a_E3a	NovelJunction	0	0.00	4.85	4.48	0.00	0.00	1.92	2.17	0.00	3.81	0.00	4.84	0.00	0.00	1.00	8.97	12.55	11.50	0.00	0.00	9.92	0.00	4.13	4.24	2.27	5.27	9.36	0.00	2.20	15.45
11	E1a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.17	0.00	1.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.70	0.00	0.00	0.00	1.25
12	Ix	Intron	0	0.62	5.60	0.00	2.08	0.00	0.80	0.58	1.07	1.79	2.51	0.00	0.72	0.75	1.05	25.52	3.71	9.51	9.58	0.93	4.34	0.83	0.00	0.00	3.74	2.49	5.01	1.06	3.31	0.78
13	Ix_SR1	SilentIntronRegion	0	0.62	5.63	0.00	2.09	0.00	0.80	0.59	1.07	1.80	2.52	0.00	0.72	0.76	1.06	25.67	3.73	9.57	9.64	0.93	4.37	0.83	0.00	0.00	3.76	2.50	5.04	1.07	3.33	0.78
14	Ix	Intron	0	1.31	2.85	2.88	3.44	1.05	2.94	2.90	2.10	4.75	4.66	1.18	0.39	1.50	1.64	55.10	12.92	55.88	9.80	2.91	9.60	4.25	2.21	0.81	11.11	6.86	16.84	1.33	5.72	2.46
15	Ix_SR1	SilentIntronRegion	0	1.34	2.90	2.93	3.51	1.07	2.95	2.92	2.14	4.83	4.70	1.20	0.40	1.53	1.67	56.05	13.00	56.94	9.85	2.96	9.65	4.33	2.25	0.82	11.29	6.99	17.16	1.36	5.83	2.51
16	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.60	1.90	0.00	1.06	2.73	0.00	0.00	0.00	0.00	5.19	9.33	0.00	7.28	0.00	7.18	0.00	0.00	0.00	2.03	0.00	0.00	0.00	0.00	0.00
17	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	21.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.50	4.14	0.00	0.00	3.80	0.00	2.48	0.00	2.93	1.93	10.94	0.00	2.07	0.00
18	E2_Ab	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	5.84	0.00	3.35	2.04	0.00	0.00	1.85	1.31	9.17	7.34	18.71	0.00	40.46	16.95	0.00	0.00	4.78	12.14	9.28	0.00	0.00	10.56	5.02
19	ER2a	ExonRegion	0	0.10	6.42	12.39	1.66	1.59	3.56	1.83	1.84	2.81	2.89	2.00	0.34	3.48	1.28	10.18	17.60	32.97	2.48	0.41	9.07	2.27	5.33	1.07	9.29	9.49	22.93	5.24	4.30	9.82
20	ER2b	ExonRegion	0	24.78	242.95	73.25	26.75	13.89	145.73	86.63	41.19	97.83	113.81	38.00	13.56	88.92	39.64	362.17	763.21	499.83	96.70	20.02	513.35	83.88	295.74	22.40	256.90	255.19	450.05	52.10	76.11	182.12
21	E2_Da	NovelBoundary	0	2.77	17.64	8.37	8.41	6.48	6.94	22.89	6.92	2.71	5.27	0.00	2.56	4.49	4.25	50.63	22.95	42.45	27.74	8.09	38.95	1.52	1.85	2.02	10.35	5.00	10.26	0.00	5.44	10.63
22	E2a_E3a	KnownJunction	0	31.56	370.35	37.45	9.06	18.42	285.30	271.26	85.80	126.32	323.80	91.52	30.00	92.54	78.88	964.51	2157.26	968.46	182.37	48.33	884.30	150.33	393.31	65.21	346.93	509.40	899.05	78.22	142.52	208.18
23	E2a_E6a	NovelJunction	0	0.00	8.63	0.00	0.00	0.00	1.96	5.61	0.00	0.00	9.15	0.00	0.00	0.00	0.00	0.00	25.55	14.45	0.00	0.00	3.14	8.70	21.49	2.12	0.00	1.78	17.85	0.00	12.63	0.00
24	E2a_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	0.41	5.04	2.89	1.38	0.00	2.46	1.42	0.82	4.55	4.06	0.38	0.24	0.33	0.64	56.47	22.81	26.94	2.86	0.00	7.06	3.29	0.81	0.12	10.46	6.04	10.66	0.94	4.07	1.41
26	Ix_SR1	SilentIntronRegion	0	0.21	5.96	3.46	1.70	0.00	2.62	1.38	0.92	4.24	4.25	0.38	0.29	0.26	0.63	54.63	23.33	29.83	2.93	0.00	7.25	3.17	0.86	0.14	10.74	6.28	10.60	1.16	4.37	1.35
27	Ix_AR1	ActiveIntronRegion	0	1.23	0.53	0.31	0.00	0.00	1.63	1.41	0.35	5.79	3.38	0.42	0.00	0.69	0.60	62.00	19.68	13.33	2.58	0.00	5.64	3.75	0.64	0.00	8.60	4.86	10.83	0.00	2.66	1.61
28	E3_Aa	NovelBoundary	0	0.00	26.86	4.14	0.00	7.37	7.06	0.00	7.61	1.55	13.42	1.23	0.00	0.00	0.86	115.80	82.08	102.08	18.24	8.09	11.25	6.14	4.28	0.00	22.91	14.62	35.23	0.00	0.00	3.57
29	ER3a	ExonRegion	0	39.22	500.69	73.46	15.65	12.92	313.58	242.36	78.30	140.98	414.00	259.83	35.95	124.02	91.67	917.19	1722.44	1290.81	192.70	40.52	743.95	155.16	437.16	99.45	538.12	688.92	1267.81	391.49	308.69	351.02
30	E3_Da	NovelBoundary	0	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	1.64	1.88	0.00	0.00	0.00	0.00	33.88	6.81	6.69	5.01	0.00	0.00	3.65	0.00	0.00	13.34	0.00	5.92	0.00	4.45	1.78
31	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E3a_E6a	KnownJunction	0	40.94	753.79	103.85	58.45	20.04	569.03	315.88	71.02	234.55	482.74	315.62	33.64	180.62	100.10	1145.29	1470.54	1498.60	217.95	40.46	663.91	273.35	420.30	79.88	723.47	980.39	1648.55	589.36	463.33	498.60
33	E4_Aa	NovelBoundary	0	5.49	13.57	0.00	0.00	0.00	0.00	0.00	2.54	2.92	4.99	0.00	0.00	3.95	0.00	35.88	3.82	24.67	0.00	0.00	3.97	5.66	4.23	0.00	5.68	5.15	0.00	2.34	0.00	1.52
34	ER4a	ExonRegion	0	0.00	2.22	0.00	0.00	0.27	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.00	0.00	34.74	8.48	1.96	0.00	0.00	0.00	0.96	0.05	0.00	0.00	0.02	2.17	0.00	0.00	0.00
35	E4_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	2.75	0.00	3.23	3.95	0.00	0.00	0.00	0.00	25.71	6.66	26.85	0.00	0.00	3.64	0.00	0.00	0.00	8.25	5.11	8.20	0.00	2.29	0.00
36	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	Ix	Intron	0	0.00	10.66	0.00	0.00	0.00	0.59	0.86	0.79	3.84	3.09	0.00	0.53	1.11	0.58	28.33	2.13	5.76	0.83	0.00	4.72	1.83	1.55	0.00	2.77	2.45	8.08	0.00	1.40	0.00
38	Ix_AR1	ActiveIntronRegion	0	0.00	11.48	0.00	0.00	0.00	0.79	1.16	0.56	4.18	3.65	0.00	0.71	1.11	0.65	31.59	2.02	7.03	1.10	0.00	5.12	2.31	1.50	0.00	2.63	3.28	9.25	0.00	1.34	0.00
39	Ix_SR1	SilentIntronRegion	0	0.00	8.50	0.00	0.00	0.00	0.00	0.00	1.52	2.94	1.49	0.00	0.00	1.16	0.38	19.31	2.53	2.04	0.00	0.00	3.59	0.44	1.74	0.00	3.26	0.00	4.77	0.00	1.63	0.00
40	E5_Aa	NovelBoundary	0	276.23	302.78	138.80	229.28	189.81	186.62	146.58	202.10	274.13	308.22	208.91	136.35	110.09	167.97	345.02	239.82	332.37	19.01	24.05	220.23	211.02	109.24	246.54	192.67	207.27	247.87	308.67	268.78	182.50
41	ER5a	ExonRegion	0	16.89	21.56	0.00	13.30	20.24	14.02	9.35	11.10	15.61	22.77	7.17	2.29	4.22	6.93	37.12	9.20	2.10	17.86	26.66	12.98	15.22	4.15	6.71	7.98	9.94	39.35	8.49	30.23	4.98
42	E5_Da	NovelBoundary	0	2281.85	2068.53	807.82	3025.08	3949.55	2211.62	1973.40	2035.33	3281.44	2828.79	1300.21	1298.68	1316.57	1647.01	2461.00	1874.68	1401.74	77.57	7.87	1423.83	2645.48	1747.31	1634.50	2172.56	2148.81	2853.15	2377.23	3282.20	1245.17
43	E5a_E7a	NovelJunction	0	2.83	0.00	0.00	7.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00
44	Ix	Intron	0	1.72	0.00	1.34	0.00	0.00	1.66	1.62	1.48	3.60	1.16	0.48	0.00	0.00	0.36	23.55	4.98	5.99	1.55	2.57	3.32	2.29	0.00	0.00	6.05	1.72	2.52	4.41	0.00	1.61
45	Ix_SR1	SilentIntronRegion	0	1.75	0.00	1.36	0.00	0.00	1.68	1.64	1.50	3.66	1.18	0.49	0.00	0.00	0.37	23.93	5.06	6.09	1.57	2.61	3.37	2.33	0.00	0.00	6.14	1.75	2.56	4.48	0.00	1.63
46	E6_Aa	NovelBoundary	0	0.00	8.53	0.00	0.00	0.00	0.00	0.00	0.00	11.39	2.04	0.00	0.00	0.00	0.91	55.21	10.71	14.90	4.62	0.00	11.08	2.05	0.00	0.00	10.47	1.93	21.67	0.00	4.13	2.05
47	ER6a	ExonRegion	0	48.26	640.69	473.83	131.23	53.99	528.58	191.63	119.99	201.08	310.78	171.10	25.71	143.73	124.83	908.66	1306.20	1172.88	183.33	44.89	826.45	287.53	582.43	55.59	870.84	824.61	1013.93	344.01	217.26	350.12
48	E6_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	0.00	1.96	2.57	0.00	1.28	0.00	0.00	0.00	0.00	0.00	43.45	3.82	19.25	0.00	0.00	11.50	4.09	0.00	0.00	3.05	1.70	0.00	0.00	2.11	0.00
49	E6a_E7a	KnownJunction	0	2.95	49.35	56.48	10.78	14.74	16.23	23.23	2.44	14.65	17.02	6.04	1.54	17.86	12.76	130.36	44.29	122.99	41.48	8.09	80.30	23.14	45.36	15.46	82.78	52.09	168.14	31.71	18.38	11.22
50	E6a_E8a	KnownJunction	0	87.42	642.20	1148.18	366.03	166.38	498.63	227.43	167.06	225.77	350.56	157.64	30.03	184.82	133.18	1459.02	2051.93	1047.20	271.12	40.46	1418.37	231.08	870.35	69.29	883.53	630.60	1162.63	389.38	264.24	428.38
51	Ix	Intron	0	0.00	5.21	0.00	0.00	0.00	1.11	0.00	1.49	0.00	2.34	0.00	0.00	1.05	0.00	24.54	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	1.74	1.16	6.36	0.00	2.64	0.00
52	Ix_SR1	SilentIntronRegion	0	0.00	5.30	0.00	0.00	0.00	1.13	0.00	1.51	0.00	2.35	0.00	0.00	1.07	0.00	24.93	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.00	1.77	1.18	6.44	0.00	2.68	0.00
53	E7_Aa	NovelBoundary	0	120.92	100.63	154.05	27.39	57.18	111.11	75.98	66.14	228.73	118.96	35.21	77.86	69.87	82.98	154.47	87.97	275.87	19.14	8.09	70.13	182.22	34.86	60.68	99.89	61.07	111.02	54.82	166.07	91.78
54	ER7a	ExonRegion	0	14.58	26.34	29.07	16.95	6.93	13.26	10.48	8.25	13.81	19.37	3.95	3.11	11.42	7.96	50.66	22.27	51.41	15.23	10.37	31.79	10.54	21.91	7.79	43.57	27.34	60.05	9.07	15.56	6.59
55	E7_Da	NovelBoundary	0	199.49	181.88	82.27	86.92	93.58	109.54	83.99	239.97	191.70	172.21	47.99	67.35	158.17	120.29	172.41	181.76	191.94	9.63	0.00	155.56	125.14	225.92	76.19	182.44	110.02	252.51	71.02	246.00	102.14
56	Ix	Intron	0	1.87	31.27	12.38	5.80	1.82	18.13	8.65	2.29	21.35	17.06	5.77	1.19	11.41	4.33	122.05	54.75	86.44	13.70	3.38	36.36	12.51	14.35	5.40	51.91	36.01	68.53	14.92	12.06	7.08
57	Ix_SR1	SilentIntronRegion	0	1.87	31.30	12.39	5.80	1.82	18.15	8.66	2.29	21.37	17.08	5.78	1.19	11.42	4.34	122.19	54.82	86.55	13.72	3.38	36.40	12.52	14.37	5.40	51.97	36.05	68.61	14.94	12.08	7.09
58	E8_Aa	NovelBoundary	0	8.02	12.31	65.18	0.00	0.00	62.12	13.79	7.61	51.40	34.35	13.76	1.54	21.24	9.93	286.02	130.51	177.10	33.78	0.00	50.69	53.87	18.23	5.02	71.12	63.04	145.56	24.05	37.20	11.16
59	ER8a	ExonRegion	0	33.59	680.36	451.31	104.77	28.35	516.27	169.97	77.76	200.52	354.77	247.32	32.25	118.41	126.86	1322.53	1448.57	1205.49	208.54	29.16	837.35	299.73	464.80	75.58	870.47	828.25	1098.66	391.73	230.64	256.92
60	E8_Da	KnownBoundary	1	27.25	615.15	410.87	53.49	28.59	412.07	64.65	91.32	171.05	295.24	138.75	37.98	90.31	131.50	1897.32	1461.20	1388.82	254.42	24.28	325.75	287.71	422.29	64.07	630.10	787.52	1720.09	337.60	300.05	328.72
61	ER8b	ExonRegion	0	13.89	407.07	284.02	31.66	12.94	245.15	67.45	35.73	191.23	196.28	127.91	21.08	74.56	68.69	1007.65	650.13	717.95	96.80	17.51	261.04	166.14	236.09	45.11	614.74	549.50	827.98	222.96	205.14	168.66