Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CIAPIN1	Gene	0	282.07	145.83	126.26	202.02	197.73	208.76	239.73	216.80	140.00	197.49	168.22	221.87	230.01	222.56	202.46	174.50	203.68	156.48	331.76	196.66	101.75	263.27	342.37	192.98	252.96	212.01	260.48	233.67	109.20
2	394391	Transcript	0	361.44	156.95	169.19	244.68	275.21	273.35	338.92	254.89	163.26	231.04	204.98	262.23	275.42	256.49	196.77	203.45	244.44	184.29	401.92	214.81	147.72	329.38	440.15	238.96	322.03	262.09	297.60	286.43	123.58
3	356811	Transcript	0	4.90	1.70	0.84	0.00	0.00	3.56	3.67	0.00	1.14	1.26	1.47	0.60	0.00	3.56	4.20	5.97	7.26	2.68	8.41	1.76	0.23	0.00	0.00	1.42	0.03	6.88	0.33	3.20	0.00
4	ER1a	ExonRegion	0	14.77	5.97	8.13	25.41	42.97	11.00	15.37	3.96	2.38	9.33	6.52	11.91	8.75	6.31	5.25	16.11	8.33	14.54	20.39	13.47	2.59	7.25	28.97	3.80	8.11	16.07	16.50	17.16	6.05
5	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	14.15	3.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	7.57	5.69	0.00	0.00	0.00	0.00	2.29	0.00	0.00	1.52	0.00	0.00	1.75	0.00
6	E1a_E2a	KnownJunction	0	503.15	174.12	319.28	1100.68	971.91	499.74	707.17	200.95	147.39	456.74	477.84	412.91	421.27	334.68	403.02	655.59	387.88	450.40	476.78	419.04	294.41	395.84	1219.57	151.63	266.98	661.44	925.37	817.93	293.85
7	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	7.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.17	0.00
9	ER1b	ExonRegion	0	347.47	131.40	204.26	665.71	689.05	312.74	443.39	131.24	89.40	290.92	289.58	291.29	286.71	213.67	236.43	406.54	259.91	348.46	385.34	290.70	164.54	265.65	792.21	106.64	190.51	421.87	582.69	521.50	192.41
10	I1	Intron	0	5.08	3.59	1.22	2.46	1.33	3.91	1.58	0.76	2.79	2.74	1.48	3.10	0.83	4.08	4.14	5.21	7.06	3.75	7.67	1.58	2.26	0.36	0.54	1.81	2.88	1.66	1.10	2.82	0.88
11	I1_AR2	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	0.00	1.61	0.00	3.37	0.00	0.00	0.00	0.00	1.09	11.20	0.00	5.41	5.73	4.53	0.00	0.00	1.80	0.00	0.00	1.43	0.00	0.00	1.63	0.00
12	I1_AR3	ActiveIntronRegion	0	1.82	0.00	0.39	0.00	2.99	0.00	4.03	0.00	3.76	1.16	0.00	0.00	0.00	2.86	11.20	0.38	7.76	7.10	1.58	0.00	0.00	1.80	0.00	2.15	1.43	0.94	0.00	2.85	0.00
13	I1_SR1	SilentIntronRegion	0	4.68	0.17	1.30	0.00	2.88	2.51	0.82	0.62	1.83	1.79	4.34	1.28	0.71	5.70	0.18	1.08	4.71	4.36	8.25	0.00	0.00	0.06	0.61	2.21	0.98	4.30	0.00	3.34	0.46
14	I1_AR4	ActiveIntronRegion	0	9.49	2.74	3.37	0.84	0.57	6.67	2.69	0.00	3.66	3.54	1.82	5.82	0.36	5.96	4.51	6.68	11.51	5.15	7.44	0.96	3.17	0.84	1.22	4.15	4.30	2.31	2.37	5.18	1.92
15	I1_SR2	SilentIntronRegion	0	4.20	4.16	0.96	3.71	1.44	3.98	1.17	0.99	2.74	3.05	1.48	2.68	1.01	3.77	3.90	4.87	6.61	3.40	8.35	2.06	2.66	0.26	0.54	1.28	3.08	1.51	1.23	2.61	0.75
16	I1_AR5	ActiveIntronRegion	0	8.42	5.69	1.04	0.00	1.90	3.36	3.89	0.98	4.31	2.31	0.91	5.90	0.81	5.86	7.22	10.67	9.35	4.96	8.93	0.36	1.33	0.40	0.24	3.34	2.55	2.13	0.24	3.10	1.38
17	E2_Aa	NovelBoundary	0	7.61	4.85	2.49	0.00	20.34	1.96	0.00	2.54	7.43	7.47	6.11	1.42	0.00	4.32	8.17	10.79	9.77	0.00	0.00	0.00	2.05	0.00	0.00	2.27	5.76	6.48	0.00	10.42	0.00
18	ER2a	ExonRegion	0	238.64	78.67	83.78	157.91	143.48	244.28	259.23	151.45	78.62	194.58	159.67	201.99	208.88	200.29	137.45	223.37	195.00	157.04	241.26	208.29	106.83	199.59	373.35	109.06	183.36	257.04	230.76	251.16	137.21
19	E2_Da	NovelBoundary	0	6.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.20	1.32
20	E2a_E3a	KnownJunction	1	180.50	98.21	49.61	100.94	76.78	160.49	234.58	178.41	60.27	266.76	330.83	282.34	273.70	269.87	107.83	174.26	241.41	118.03	339.88	190.70	75.57	165.59	618.53	131.95	240.87	378.42	662.22	482.74	230.10
21	ER3a	ExonRegion	0	381.10	137.84	218.68	319.03	340.76	251.41	244.60	242.35	94.56	260.32	208.25	228.51	210.75	273.61	139.61	184.89	184.28	180.13	376.47	272.30	124.54	311.51	453.98	236.47	306.47	220.50	388.60	245.40	122.60
22	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
23	E3a_E4a	KnownJunction	0	486.57	215.71	136.81	529.96	304.17	249.58	265.08	261.32	116.94	276.50	207.52	243.88	261.76	317.97	216.26	213.28	195.27	260.20	444.41	292.59	136.17	358.02	384.34	242.01	371.35	164.83	238.20	171.28	92.93
24	E3a_E5a	NovelJunction	0	10.85	0.00	0.00	0.00	0.00	0.00	0.00	8.56	0.00	0.00	0.00	0.00	1.40	1.13	0.00	0.00	2.05	0.00	0.00	2.98	0.00	0.00	0.00	0.00	0.00	1.97	0.00	2.16	0.00
25	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	3.32	0.00	0.00	1.48	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.95
26	ER4a	ExonRegion	0	477.77	189.63	134.58	432.11	290.74	348.47	357.57	325.87	124.89	330.51	253.59	260.92	298.64	335.45	204.17	258.76	224.13	220.00	477.68	298.22	176.26	418.33	499.71	273.87	391.06	283.30	254.61	295.35	155.78
27	E4_Da	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E4a_E5a	KnownJunction	0	425.52	135.25	139.35	411.54	281.04	453.85	456.40	323.78	133.81	351.08	232.61	249.51	281.44	297.23	249.95	261.55	232.79	250.70	428.68	318.39	193.73	318.88	563.61	213.54	347.14	299.50	210.17	312.90	153.38
29	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER5a	ExonRegion	0	494.67	206.87	178.85	235.82	221.40	405.87	403.33	347.09	154.93	328.87	297.58	314.24	330.79	347.41	229.06	280.60	267.42	246.84	545.80	298.28	193.96	395.76	589.89	297.94	431.11	299.95	392.90	318.59	156.92
31	E5_Da	KnownBoundary	0	8.08	8.82	1.54	0.00	0.00	3.64	0.00	0.00	1.13	0.00	2.91	1.54	0.00	8.53	0.00	9.94	15.78	4.62	32.37	3.80	1.60	0.00	0.00	7.78	0.00	0.00	2.04	2.11	1.49
32	E5a_E6a	KnownJunction	0	462.56	154.93	198.15	371.64	355.02	388.63	435.81	367.82	195.26	283.05	257.73	249.33	291.57	329.20	264.70	228.20	253.52	205.87	550.06	311.28	179.29	417.96	618.72	316.18	446.89	360.52	265.43	332.36	162.00
33	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	8.09	0.00	5.50	0.00	0.00	0.00	1.70	1.63	0.00	0.00	0.00
34	ER5b	ExonRegion	0	4.90	1.70	0.84	0.00	0.00	3.56	3.67	0.00	1.14	1.26	1.47	0.60	0.00	3.56	4.20	5.97	7.26	2.68	8.41	1.76	0.23	0.00	0.00	1.42	0.03	6.88	0.33	3.20	0.00
35	E5_Db	NovelBoundary	0	5.49	14.15	2.19	9.71	0.00	17.73	5.26	5.08	5.06	6.67	4.65	4.43	1.62	4.65	15.75	10.71	18.35	9.25	16.18	3.56	13.08	0.00	0.00	2.57	8.64	0.00	5.07	1.71	0.00
36	I5	Intron	0	6.05	3.82	1.67	1.98	1.08	5.40	2.68	0.82	3.20	5.44	2.97	3.65	0.86	6.36	2.65	6.75	11.16	6.26	7.43	2.05	2.05	0.70	0.50	3.69	3.64	1.65	1.72	2.62	1.93
37	I5_AR1	ActiveIntronRegion	0	5.89	1.96	1.02	1.46	1.99	3.84	3.60	0.38	3.34	4.63	3.16	3.76	0.63	5.35	0.94	8.20	9.76	5.20	7.60	2.55	2.04	1.84	0.74	4.05	3.88	0.80	2.24	1.26	2.18
38	I5_SR1	SilentIntronRegion	0	6.16	4.55	1.92	2.20	0.75	6.03	2.35	0.99	3.16	5.78	2.92	3.64	0.95	6.79	3.31	6.26	11.76	6.70	7.42	1.88	2.08	0.28	0.42	3.58	3.58	1.99	1.54	3.15	1.84
39	E6_Aa	NovelBoundary	0	15.75	0.00	1.02	0.00	0.00	5.18	4.98	0.00	7.22	1.88	2.53	1.27	0.00	7.71	9.57	10.17	12.99	0.00	0.00	0.00	6.02	0.00	1.92	2.99	3.49	0.00	22.66	4.13	0.00
40	ER6a	ExonRegion	0	427.10	175.08	185.05	261.58	303.27	314.71	340.44	296.36	134.78	265.79	227.89	252.61	291.12	303.82	165.60	198.42	246.65	212.99	393.26	274.72	153.72	348.83	515.09	270.38	370.78	265.50	273.74	307.77	130.68
41	E6_Da	NovelBoundary	0	10.50	3.97	10.51	0.00	0.00	11.82	2.17	2.54	5.09	5.35	2.53	6.48	0.00	8.84	0.00	9.87	23.63	0.00	0.00	14.89	1.76	2.48	4.63	14.18	1.82	1.76	0.00	4.22	0.00
42	E6a_E7a	KnownJunction	0	379.69	163.07	187.34	252.14	340.72	291.56	418.35	214.29	154.55	212.15	236.06	270.06	290.26	257.77	130.16	209.38	269.14	188.41	436.77	180.04	159.36	275.61	483.58	221.92	313.73	259.85	338.94	283.83	132.29
43	E6a_E8a	NovelJunction	0	5.60	0.00	9.04	0.00	0.00	14.16	19.22	14.33	4.20	11.50	0.00	22.02	10.48	9.68	16.14	0.00	9.34	9.25	0.00	20.01	6.98	4.67	9.26	14.95	15.34	2.19	10.14	20.98	6.87
44	E6a_E9a	NovelJunction	0	6.02	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	2.00	6.20	5.45	0.00	1.15	0.00	0.00	1.67	4.62	0.00	2.98	0.00	0.00	0.00	0.00	3.37	0.00	0.00	0.00	0.00
45	I6	Intron	0	6.02	5.65	1.24	1.06	2.89	5.49	0.89	0.54	6.31	2.99	1.67	3.51	0.19	7.15	9.30	11.91	8.83	6.55	11.33	2.39	4.43	0.80	0.67	4.77	3.59	0.46	2.17	4.34	1.48
46	I6_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.98	0.00	0.00	0.00	0.00	0.00	5.60	0.00	1.75	0.68	11.88	0.00	0.00	0.00	0.00	0.00	1.25	1.38	0.00	1.63	0.00
47	I6_SR1	SilentIntronRegion	0	6.29	2.92	0.96	0.00	1.72	3.91	0.71	0.97	4.32	3.36	1.20	2.64	0.46	5.60	9.19	8.17	7.13	7.02	12.34	3.50	4.45	1.27	0.26	2.93	4.55	0.52	1.29	1.52	1.06
48	I6_AR2	ActiveIntronRegion	0	6.28	8.20	1.55	1.97	4.02	7.12	1.11	0.25	8.32	2.93	2.17	4.46	0.00	8.92	10.00	15.74	10.80	6.68	11.18	1.71	4.76	0.49	1.04	6.57	3.10	0.43	3.01	6.83	1.92
49	E7_Aa	NovelBoundary	0	8.67	0.00	4.61	10.78	0.00	1.88	2.92	1.99	11.21	0.00	2.47	5.36	1.62	5.23	7.97	6.88	2.79	4.62	24.28	2.98	1.76	1.90	1.87	5.20	3.41	0.00	6.36	2.29	3.43
50	ER7a	ExonRegion	0	430.64	166.00	207.29	242.33	336.08	320.11	371.25	295.03	180.94	299.26	246.27	318.74	299.36	287.53	242.56	242.03	255.93	219.79	530.46	236.02	168.34	349.05	518.49	273.36	379.24	308.11	436.57	332.77	144.58
51	E7_Da	NovelBoundary	0	5.43	0.00	1.89	0.00	7.37	0.00	4.58	0.00	3.05	2.00	5.57	0.00	0.00	3.23	0.00	3.75	4.93	0.00	0.00	0.00	1.89	0.00	0.00	2.33	5.72	0.00	4.57	10.56	6.01
52	E7a_E8a	KnownJunction	0	379.28	197.49	164.91	268.97	316.70	282.23	432.83	211.70	176.26	300.83	307.42	331.08	313.51	273.15	217.26	227.05	281.34	229.63	558.38	277.12	177.73	346.84	571.15	273.66	366.58	308.12	415.62	397.15	133.21
53	I7_AR1	ActiveIntronRegion	0	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.18	0.00	0.91	0.00	2.66	0.80	2.32	0.00	0.00	2.85	0.00	0.00	0.00	0.36	0.00	0.00	2.61	0.40
54	I7_SR1	SilentIntronRegion	0	1.15	2.25	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.83	0.91	1.64	0.00	4.47	1.87	6.09	2.23	0.00	3.20	0.00	0.00	0.00	3.90	0.00	0.00	2.70	0.83
55	I7_SR3	SilentIntronRegion	0	3.01	3.01	0.00	3.35	2.29	1.93	0.94	0.00	3.94	3.38	0.00	1.16	3.03	2.12	2.52	1.16	2.78	4.51	0.00	0.00	0.00	0.84	0.00	2.01	4.01	5.15	0.86	3.81	0.00
56	E8_Aa	NovelBoundary	0	3.01	0.00	3.96	9.92	5.60	5.37	0.00	2.09	12.58	2.96	1.49	7.98	2.99	7.49	8.37	13.16	12.00	4.62	8.09	0.00	1.64	0.00	0.00	2.75	3.37	10.08	0.00	3.95	0.00
57	ER8a	ExonRegion	0	459.59	220.69	210.79	276.10	285.83	357.98	454.53	318.60	195.84	333.23	254.35	338.18	355.57	311.94	268.08	271.16	327.44	251.48	454.46	255.36	211.73	461.94	552.71	284.92	412.08	365.42	418.57	385.05	152.61
58	E8_Da	NovelBoundary	0	5.54	12.22	1.45	0.00	0.00	5.14	2.29	1.99	2.86	1.72	1.61	4.79	4.62	2.19	8.37	0.00	8.94	4.62	0.00	0.00	3.69	3.69	4.33	0.00	6.86	10.69	0.00	10.74	1.35
59	E8a_E9a	KnownJunction	0	456.43	163.94	245.46	320.73	326.28	331.34	376.99	365.48	252.88	206.36	159.98	361.62	390.98	322.53	227.42	287.56	341.94	195.21	347.98	203.85	199.11	498.72	394.98	306.61	362.30	283.32	275.47	301.58	149.52
60	I8	Intron	0	3.86	1.43	1.34	1.43	0.49	2.89	0.60	0.92	1.57	2.31	0.71	2.90	2.27	4.25	2.39	0.99	5.97	3.15	3.19	2.48	0.71	0.90	1.63	4.09	1.43	1.73	1.10	2.77	0.20
61	I8_AR1	ActiveIntronRegion	0	5.14	2.45	2.29	1.23	0.00	1.41	0.69	0.32	2.02	2.22	1.02	3.37	3.10	4.26	2.37	0.42	6.39	2.64	3.28	2.83	0.49	1.23	1.86	4.05	1.71	1.88	1.88	3.91	0.34
62	I8_SR2	SilentIntronRegion	0	2.09	0.00	0.00	0.00	0.00	5.71	1.09	1.65	0.49	0.00	0.00	1.46	1.00	5.67	0.00	0.32	2.80	8.12	2.20	0.65	0.33	0.00	0.00	1.82	2.64	0.00	0.00	0.50	0.00
63	I8_SR3	SilentIntronRegion	0	4.69	0.00	0.00	0.00	0.00	4.62	0.95	2.01	1.74	2.02	0.00	3.24	1.00	4.31	5.07	2.67	9.49	2.57	4.10	2.97	3.09	0.00	1.57	7.22	0.35	2.73	0.00	3.88	0.00
64	I8_AR2	ActiveIntronRegion	0	0.85	0.00	0.00	3.93	2.68	5.79	0.00	2.10	0.85	4.39	0.65	2.31	1.42	3.90	2.53	2.29	5.28	3.35	3.50	2.42	0.37	0.99	1.98	4.09	0.78	1.89	0.00	0.09	0.00
65	E9_Aa	NovelBoundary	0	5.60	0.00	0.00	0.00	0.00	1.61	0.00	1.99	6.94	3.87	0.00	1.87	1.27	1.09	7.77	3.21	13.57	13.87	0.00	0.00	1.97	0.00	2.36	2.87	1.93	2.15	0.00	3.32	0.00
66	ER9a	ExonRegion	0	242.90	165.35	115.60	183.22	169.99	162.63	204.70	220.74	176.51	169.32	148.63	226.51	237.65	216.20	249.91	151.17	215.69	140.70	325.53	181.39	77.58	258.19	277.67	199.82	238.58	191.94	237.55	220.24	101.28