Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CDIPT	Gene	0	66.47	60.76	113.75	46.84	55.11	65.04	35.31	34.01	67.22	81.00	56.39	114.15	93.67	90.89	48.49	65.04	123.24	81.39	45.13	106.15	59.45	129.92	89.77	133.65	85.11	98.80	49.65	110.22	100.22
2	219789	Transcript	0	67.70	61.84	124.79	61.39	97.74	72.70	45.59	34.64	64.67	98.83	51.32	97.17	94.22	93.46	61.24	74.28	106.26	94.60	45.96	103.23	73.57	148.71	97.98	166.72	96.28	100.42	47.07	112.87	98.85
3	422477	Transcript	0	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	403894	Transcript	0	5.08	2.91	3.81	0.14	0.39	3.83	1.39	0.69	3.89	2.06	1.41	3.37	0.97	3.15	4.82	2.69	7.13	2.25	2.28	3.64	3.62	1.20	0.77	6.03	1.26	2.92	0.81	1.85	1.75
5	ER1a	ExonRegion	0	1.72	2.99	3.69	2.79	12.74	3.85	1.92	1.13	2.26	5.21	3.26	5.06	5.18	4.04	2.85	6.70	3.97	6.01	1.92	3.54	3.43	5.98	7.57	3.20	4.34	7.49	1.30	6.68	7.05
6	E1_Ab	KnownBoundary	0	27.72	14.45	44.97	56.94	69.56	44.89	19.62	4.73	29.45	70.98	21.35	42.92	41.46	32.88	25.71	56.99	58.05	42.25	0.00	43.17	30.72	64.61	73.92	18.96	47.62	69.69	11.73	44.98	70.52
7	ER1b	ExonRegion	0	59.37	21.28	83.63	14.30	84.13	33.97	23.14	12.56	16.56	38.35	19.31	47.61	44.03	49.07	45.18	62.59	71.44	73.41	20.62	90.73	29.89	107.20	69.87	87.98	36.47	58.99	21.42	65.53	75.30
8	E1_Ac	KnownBoundary	0	123.63	38.39	26.26	0.00	14.00	57.55	30.95	11.69	30.12	80.05	31.79	47.53	47.29	68.07	29.90	107.10	56.39	116.49	16.18	148.20	51.90	191.31	56.39	203.79	80.01	101.28	7.16	70.68	85.44
9	ER1c	ExonRegion	0	118.34	69.67	41.84	4.23	14.29	90.48	46.15	23.79	42.10	120.06	33.60	74.54	85.63	98.92	76.20	136.19	88.02	172.37	50.98	207.10	74.70	205.80	107.02	180.30	104.15	105.18	13.06	86.99	125.74
10	E1_Da	KnownBoundary	0	63.65	33.54	24.62	0.00	6.78	67.22	35.53	12.74	25.76	71.10	5.50	27.53	47.54	54.93	47.84	57.76	36.15	62.16	0.00	96.84	42.84	98.30	66.39	88.23	56.34	50.90	5.72	42.15	69.82
11	E1a_E1d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E1_Db	KnownBoundary	0	37.75	38.39	21.75	0.00	7.37	36.53	26.95	20.20	40.90	42.42	8.95	64.03	55.60	35.56	81.32	68.77	60.23	38.14	24.28	69.38	37.66	72.63	84.02	60.53	70.24	48.75	11.18	56.12	50.11
13	E1b_E1e	KnownJunction	0	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1d	ExonRegion	0	103.42	87.05	50.77	14.63	26.15	102.76	65.51	31.76	58.42	134.99	31.24	103.59	106.52	106.58	141.42	159.44	104.18	223.11	106.36	210.10	86.65	201.91	157.77	160.26	122.57	118.66	20.60	113.29	137.91
15	ER1e	ExonRegion	0	105.45	63.54	105.96	32.48	64.61	86.74	63.46	40.32	70.67	103.06	50.09	148.86	114.62	111.82	93.95	118.08	168.42	158.91	64.12	178.42	71.63	183.79	189.67	140.52	87.96	158.50	41.71	194.66	151.74
16	E1_Ad	KnownBoundary	0	73.73	9.40	62.31	9.92	47.01	35.18	30.50	25.73	30.15	30.92	27.36	106.44	62.00	56.32	25.91	50.49	110.97	23.76	0.00	55.66	24.55	76.72	89.59	70.34	48.80	66.90	29.82	101.10	65.27
17	E1_Ae	KnownBoundary	0	61.46	41.20	108.60	20.92	61.45	64.61	28.09	13.54	44.10	72.26	47.17	83.61	63.27	60.22	35.28	34.04	92.22	23.50	8.09	65.17	48.85	80.75	61.96	92.47	48.57	107.80	41.55	85.06	66.59
18	ER1f	ExonRegion	0	136.65	72.27	192.44	58.50	145.71	122.00	65.51	55.69	84.26	123.08	78.84	203.78	145.81	136.51	89.61	91.74	216.12	163.75	62.23	186.21	83.09	186.13	202.07	196.29	122.21	185.45	81.05	211.09	153.34
19	ER1g	ExonRegion	0	165.65	128.06	313.90	103.86	239.50	190.59	76.35	81.18	130.98	208.20	144.06	233.17	221.01	214.46	111.40	119.10	252.17	217.91	99.99	237.77	151.60	304.47	199.78	327.75	231.51	243.82	109.18	217.48	223.07
20	E1_Dc	KnownBoundary	0	46.78	3.88	31.89	0.00	6.93	13.70	0.00	4.68	4.42	13.78	5.50	6.11	7.87	14.65	37.07	11.40	32.32	28.51	24.28	11.33	9.71	11.13	16.10	13.52	2.80	12.45	4.52	9.93	20.83
21	E1c_E1f	KnownJunction	0	163.63	180.81	389.49	210.30	313.61	200.20	117.00	93.41	182.38	287.05	151.91	233.52	255.77	257.06	131.35	172.35	252.64	210.75	113.29	228.17	217.80	405.08	194.68	523.15	292.81	234.10	145.27	250.13	235.25
22	E1c_E2a	NovelJunction	0	2.48	8.43	16.32	29.55	0.00	12.16	21.11	1.89	1.16	6.99	1.55	4.55	9.52	19.01	9.37	6.12	11.70	27.74	8.09	29.28	7.26	17.45	13.40	7.78	2.99	6.27	8.25	20.53	12.28
23	ER1h	ExonRegion	0	24.48	6.67	32.23	9.54	21.55	12.37	7.41	5.27	6.95	10.50	8.47	14.19	11.84	21.32	29.59	16.70	31.51	19.71	16.53	19.73	11.83	20.08	12.41	17.14	10.37	21.79	11.99	12.75	17.58
24	E1_Af	KnownBoundary	0	22.06	9.70	27.38	28.47	29.03	14.27	2.92	6.87	9.74	3.60	5.88	22.20	19.49	22.51	45.84	27.08	39.17	32.88	48.55	30.35	14.00	23.34	4.68	24.88	14.66	22.79	16.60	20.89	31.69
25	ER1i	ExonRegion	0	206.89	163.29	320.62	139.38	205.06	236.18	111.11	105.88	185.55	259.29	147.77	303.93	250.13	259.22	120.91	184.63	303.12	238.42	127.26	310.83	201.19	382.99	247.43	430.87	274.97	233.43	130.41	281.01	225.92
26	E1_Dd	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	1.50	0.00	0.00	0.00	3.91	0.00	3.92	0.00	3.81	15.95	3.82	21.25	4.62	8.09	0.00	4.93	0.00	0.00	5.50	0.00	6.22	0.00	2.11	1.68
27	E1d_E2a	KnownJunction	0	259.06	222.50	385.81	158.75	120.26	294.24	131.59	143.97	262.20	335.02	190.35	407.52	410.12	336.12	204.50	220.39	396.97	278.18	178.03	354.94	269.18	429.92	379.72	581.11	378.40	352.45	203.46	393.06	317.52
28	I1	Intron	0	6.27	0.80	1.68	0.00	0.89	3.14	0.92	0.50	2.56	3.96	0.87	3.10	0.89	8.35	6.54	3.21	16.51	4.49	4.96	3.02	2.74	1.32	0.66	5.70	1.05	4.31	0.67	1.94	2.39
29	I1_AR1	ActiveIntronRegion	0	8.83	1.13	2.15	0.00	1.26	4.07	1.04	0.71	3.61	5.02	1.07	4.04	1.25	10.95	8.63	3.98	22.49	5.04	4.94	3.55	3.31	1.39	0.93	6.65	1.10	5.87	0.47	2.10	2.84
30	E2_Aa	NovelBoundary	0	5.78	4.85	2.62	0.00	0.00	3.91	0.00	0.00	3.72	0.00	0.00	4.22	0.00	6.62	25.51	7.27	24.17	9.25	0.00	25.47	0.00	0.00	0.00	16.57	1.78	3.35	0.00	5.89	1.42
31	ER2a	ExonRegion	0	240.93	259.83	402.72	173.60	126.58	289.01	157.32	147.48	277.60	357.12	276.92	524.73	404.81	397.20	171.84	261.98	521.66	302.03	210.77	408.62	280.29	464.26	353.59	545.94	368.57	387.50	247.25	455.28	381.18
32	E2_Da	KnownBoundary	0	9.02	0.00	5.66	0.00	0.00	1.84	10.24	0.00	11.85	6.07	0.00	2.56	0.00	7.36	0.00	9.56	5.29	9.25	8.09	0.00	0.00	0.00	2.02	7.24	0.00	0.00	6.71	0.00	0.00
33	E2a_E2b	KnownJunction	0	222.38	319.16	423.50	170.61	137.50	317.07	121.30	113.12	348.89	321.84	190.88	594.96	403.53	406.82	143.91	241.05	496.73	374.37	177.81	395.22	270.38	426.57	367.75	495.57	288.84	366.74	162.51	421.32	412.87
34	ER2b	ExonRegion	0	10.16	5.82	7.63	0.28	0.79	7.66	2.77	1.39	7.78	4.13	2.82	6.75	1.95	6.29	9.65	5.37	14.26	4.50	4.57	7.27	7.23	2.39	1.54	12.06	2.53	5.84	1.63	3.71	3.50
35	E2_Ab	KnownBoundary	0	13.21	0.00	1.32	0.00	0.00	11.36	0.00	0.00	8.92	1.80	9.90	6.57	3.92	2.92	16.74	10.86	19.85	0.00	0.00	0.00	9.55	7.15	2.41	16.27	0.00	1.76	0.00	1.93	2.05
36	ER2c	ExonRegion	0	284.76	317.62	452.93	142.82	164.27	304.62	147.42	166.54	373.42	341.26	248.56	564.42	465.75	482.12	174.52	289.16	537.22	327.40	179.30	500.96	259.90	633.03	390.16	637.43	369.86	400.98	189.73	472.73	421.89
37	E2_Db	NovelBoundary	0	5.43	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.60	1.62	5.49	8.17	0.00	14.56	0.00	8.09	4.13	4.09	0.00	0.00	3.05	0.00	0.00	2.53	0.00	5.51
38	E2b_E3a	KnownJunction	0	300.77	258.47	389.40	129.20	127.77	265.93	150.65	143.52	361.41	324.64	260.23	531.47	405.73	427.18	288.02	306.15	577.23	263.28	234.46	482.30	251.89	583.99	355.44	658.21	358.17	398.16	290.03	500.00	444.06
39	E2b_E4a	NovelJunction	0	0.00	0.00	8.47	0.00	7.37	8.33	0.00	1.99	2.77	13.02	0.00	0.00	5.70	3.83	18.34	0.00	3.35	4.62	0.00	6.78	1.89	2.38	6.85	5.92	3.33	8.24	0.00	4.40	2.05
40	I2	Intron	0	4.32	0.36	1.81	2.22	0.00	2.77	0.00	1.14	0.96	1.34	0.18	0.96	0.00	2.18	5.82	0.38	5.79	2.09	1.98	1.71	2.87	0.84	0.00	0.67	0.89	0.97	0.28	1.52	0.32
41	I2_SR1	SilentIntronRegion	0	4.33	0.36	1.82	2.23	0.00	2.78	0.00	1.15	0.96	1.35	0.19	0.96	0.00	2.18	5.84	0.39	5.80	2.10	1.99	1.71	2.88	0.84	0.00	0.67	0.89	0.98	0.28	1.52	0.32
42	E3_Aa	NovelBoundary	0	15.69	4.85	1.54	9.06	0.00	5.37	0.00	0.00	3.38	8.15	0.00	0.00	1.56	4.41	0.00	13.69	7.29	9.25	0.00	0.00	3.61	0.00	0.00	0.00	1.82	4.29	0.00	0.00	0.00
43	ER3a	ExonRegion	0	269.19	280.86	414.87	193.43	150.30	230.34	153.93	165.85	323.38	338.72	267.79	513.14	422.73	430.59	217.60	251.93	586.67	321.01	210.01	460.47	223.26	574.11	363.20	641.15	413.48	447.17	246.72	476.51	475.24
44	E3_Da	NovelBoundary	0	10.79	8.92	4.31	0.00	0.00	3.61	0.00	2.24	8.53	0.00	1.27	1.30	1.62	2.26	9.97	14.61	6.73	4.62	0.00	0.00	7.66	9.82	0.00	13.64	4.93	0.00	0.00	8.27	1.68
45	E3a_E4a	KnownJunction	0	267.85	359.10	474.13	169.53	173.90	266.08	157.86	137.20	438.12	450.03	247.16	506.62	416.91	408.28	199.32	308.14	644.73	357.29	185.90	428.80	251.13	567.80	335.98	631.35	476.33	409.19	226.27	394.27	556.54
46	Ix	Intron	0	1.66	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.87	0.00	0.92	0.00	0.00	0.70	0.00	1.92	0.00	4.71	0.00	0.00	0.00	0.00	0.00	3.32	2.21	0.00	0.00	0.00	0.00
47	Ix_AR1	ActiveIntronRegion	0	1.71	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.90	0.00	0.95	0.00	0.00	0.72	0.00	1.98	0.00	4.86	0.00	0.00	0.00	0.00	0.00	3.43	2.28	0.00	0.00	0.00	0.00
48	E4_Aa	NovelBoundary	0	6.02	0.00	1.54	0.00	0.00	3.57	0.00	0.00	6.12	2.04	0.00	1.54	1.56	0.86	0.00	3.60	8.04	4.62	0.00	0.00	0.00	0.00	0.00	5.50	1.93	0.00	0.00	0.00	0.00
49	ER4a	ExonRegion	0	37.74	39.17	98.32	48.08	40.21	30.78	18.01	20.18	44.76	48.03	35.86	72.33	61.02	47.78	28.86	34.96	83.16	46.43	25.84	59.00	30.91	83.12	55.58	73.72	49.86	70.75	34.52	78.55	72.95
50	ER4b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.68	3.37	0.00	0.00	1.24	1.30	0.91	16.80	0.00	0.00	2.73	4.53	2.81	1.43	0.00	0.00	0.00	0.00	1.57	0.00	0.00	1.34