Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RAB15	Gene	0	9.56	25.79	46.59	37.21	299.76	30.75	44.63	9.68	16.48	105.89	47.81	32.71	29.74	18.71	7.24	22.22	32.97	18.45	11.37	3.72	13.50	12.85	28.49	16.88	22.33	16.27	210.69	21.45	25.80
2	267512	Transcript	0	0.00	0.00	1.47	0.00	27.12	5.37	0.00	0.00	1.31	3.28	4.71	6.90	7.26	1.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.78	3.05	0.00	0.00	21.77	7.10	0.00
3	436278	Transcript	0	7.49	31.99	63.58	10.78	373.29	27.05	76.32	18.76	8.62	146.28	86.11	32.80	22.32	23.84	0.00	13.16	22.01	18.49	32.37	0.00	8.90	15.02	38.51	7.78	27.66	0.00	170.06	27.45	21.36
4	426039	Transcript	0	0.95	0.65	0.99	2.01	6.00	1.88	2.06	1.17	1.94	2.43	0.79	1.65	1.33	1.27	0.02	1.91	3.21	1.35	0.90	0.22	0.80	0.70	1.54	1.09	0.66	0.80	1.07	1.53	0.71
5	ER1a	ExonRegion	0	3.77	3.09	18.10	8.31	74.58	10.89	11.13	3.70	2.71	37.62	14.66	9.65	8.36	12.77	1.37	8.37	8.57	10.01	0.40	0.00	2.94	8.65	11.08	6.80	5.49	1.98	39.60	6.62	5.07
6	E1a_E3a	KnownJunction	0	5.90	18.32	25.19	10.35	210.30	8.86	40.34	5.77	1.46	81.69	52.96	12.20	11.72	23.64	0.00	10.40	23.97	13.87	0.00	0.00	5.41	4.72	13.54	2.39	8.87	8.50	110.73	13.88	17.00
7	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	2.86	0.02	0.00	0.02	0.04	0.05	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.03
8	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	9.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	Ix	Intron	0	1.59	0.91	0.39	0.78	0.55	1.24	0.44	1.36	2.67	3.15	0.81	2.30	0.77	0.93	2.57	1.52	3.83	0.56	0.75	0.44	1.98	0.77	0.66	1.60	1.12	0.85	0.67	3.03	0.67
11	Ix_SR4	SilentIntronRegion	0	1.13	0.68	0.41	0.70	0.63	0.76	0.43	1.13	2.72	2.57	0.58	1.70	0.43	0.64	2.81	0.98	3.14	0.55	0.59	0.29	1.65	0.49	0.33	1.49	0.69	0.98	0.22	2.16	0.50
12	Ix_AR3	ActiveIntronRegion	0	2.88	0.00	0.42	0.00	0.61	2.06	0.00	1.61	3.07	5.79	0.20	5.36	1.85	0.77	1.81	0.68	8.32	0.00	1.59	0.00	2.96	1.48	0.00	3.22	2.57	0.78	2.15	3.60	2.58
13	Ix_SR3	SilentIntronRegion	0	2.00	0.59	0.92	1.31	0.00	1.13	0.55	2.02	3.14	3.81	0.73	2.54	1.08	0.97	2.47	2.68	4.55	0.00	1.76	0.76	1.61	1.88	0.50	1.58	0.47	0.43	0.94	3.63	0.62
14	Ix_SR2	SilentIntronRegion	0	1.87	1.41	0.23	1.43	0.37	1.85	0.50	1.63	2.33	4.40	0.76	3.46	0.94	1.23	1.88	1.71	5.19	0.54	0.40	0.32	2.73	0.76	0.95	1.62	1.08	0.77	1.22	3.62	1.07
15	Ix_AR1	ActiveIntronRegion	0	5.41	1.80	0.96	0.00	2.59	4.45	0.80	3.97	3.70	6.14	0.99	5.11	2.46	2.29	3.33	4.15	6.81	2.10	0.85	1.10	3.44	3.07	2.63	3.99	3.53	3.68	1.52	11.55	1.57
16	Ix_SR1	SilentIntronRegion	0	3.68	4.00	0.61	2.12	0.29	3.40	0.95	3.96	7.18	5.54	3.38	4.91	2.84	2.33	4.76	4.52	8.76	1.72	0.94	0.65	3.99	1.64	2.68	2.90	4.40	1.65	1.52	8.15	1.16
17	E3_Aa	NovelBoundary	0	2.48	9.11	1.20	18.12	0.00	0.00	0.00	2.09	6.12	3.83	5.88	7.74	11.37	1.29	8.37	3.52	8.53	0.00	0.00	0.00	4.09	2.04	4.19	2.81	3.60	3.73	2.53	0.00	1.58
18	ER3a	ExonRegion	0	12.37	18.04	30.61	9.71	276.68	16.72	35.75	13.22	5.01	104.26	54.53	19.83	17.36	23.36	8.54	13.52	18.87	14.90	12.69	3.18	6.41	14.22	27.98	15.30	16.17	10.00	134.54	14.22	14.54
19	E3_Da	NovelBoundary	1	0.00	9.70	2.77	0.00	7.37	5.64	0.00	0.00	7.64	7.11	3.23	9.40	3.15	3.52	8.37	0.00	11.48	4.62	8.09	0.00	5.37	0.00	4.73	5.44	1.93	0.00	0.00	18.06	0.00
20	E3a_E4a	KnownJunction	0	13.09	35.58	37.60	9.06	419.42	21.22	38.68	24.09	6.64	112.69	53.34	37.56	25.22	23.60	7.57	14.38	12.58	4.62	8.09	2.98	7.62	24.31	41.67	16.33	14.47	13.22	166.74	13.16	13.90
21	Ix	Intron	0	5.94	1.95	3.12	3.02	6.47	4.14	3.16	1.77	3.98	9.04	3.44	5.20	2.42	2.62	1.11	3.12	9.71	1.89	1.15	0.57	5.24	0.43	2.72	1.55	1.98	1.42	2.98	5.20	2.61
22	Ix_SR1	SilentIntronRegion	0	5.95	1.95	3.13	3.03	6.48	4.15	3.16	1.78	3.99	9.06	3.45	5.21	2.42	2.62	1.11	3.12	9.73	1.90	1.16	0.57	5.25	0.44	2.73	1.56	1.98	1.42	2.98	5.21	2.62
23	E4_Aa	NovelBoundary	0	0.00	4.17	5.08	0.00	6.78	0.00	0.00	2.04	7.28	3.60	2.88	4.40	1.31	2.50	0.00	3.60	8.62	0.00	8.09	0.00	2.05	0.00	0.00	0.00	1.93	0.00	0.00	4.22	0.00
24	ER4a	ExonRegion	1	8.96	27.57	33.94	28.17	253.41	36.06	55.12	15.91	5.07	111.45	33.24	30.23	19.78	28.88	5.05	20.54	20.00	23.09	2.23	0.74	6.94	24.23	35.10	9.52	19.75	13.24	117.79	7.59	11.46
25	E4_Da	NovelBoundary	0	0.00	0.00	1.37	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	6.84	1.21	1.11	0.00	0.00	4.77	0.00	0.00	0.00	3.69	7.15	0.00	0.00	1.93	1.85	0.00	0.00	0.00
26	E4a_E5a	KnownJunction	1	0.00	8.05	38.14	51.98	210.15	40.17	48.98	10.15	1.77	115.52	18.28	24.16	16.37	21.96	0.00	28.08	28.05	9.25	0.00	0.00	6.94	14.39	37.58	13.88	15.91	5.97	79.71	4.58	12.91
27	Ix	Intron	0	4.81	2.01	2.09	1.79	10.35	2.91	1.51	1.38	2.24	6.48	1.19	3.54	1.21	2.20	3.20	2.17	8.00	0.96	0.80	0.34	1.25	2.02	1.80	0.54	1.25	1.96	0.91	4.67	1.67
28	Ix_SR1	SilentIntronRegion	0	4.82	2.01	2.09	1.79	10.38	2.92	1.51	1.38	2.24	6.50	1.19	3.54	1.22	2.21	3.21	2.17	8.02	0.96	0.80	0.34	1.25	2.03	1.81	0.54	1.25	1.96	0.92	4.69	1.67
29	E5_Aa	NovelBoundary	0	5.66	0.00	3.89	0.00	6.93	4.72	0.00	6.82	5.57	3.91	0.00	1.42	3.89	0.93	19.13	0.00	8.96	4.62	0.00	0.00	9.47	2.04	2.51	0.00	0.00	1.63	0.00	6.29	1.45
30	ER5a	ExonRegion	0	11.13	20.51	50.25	40.13	268.88	33.84	68.02	13.22	9.88	152.84	64.69	53.28	28.69	31.53	6.18	26.90	40.38	16.58	19.32	0.00	13.02	17.33	42.26	8.94	31.19	18.96	173.71	38.41	28.15
31	E5_Da	KnownBoundary	0	10.97	3.68	10.44	29.98	47.31	10.32	2.35	0.00	4.08	17.74	2.94	12.53	5.41	7.93	0.00	3.82	19.90	0.00	8.09	0.00	1.72	6.90	4.33	0.00	4.70	7.12	17.10	13.03	3.20
32	E5a_E6a	KnownJunction	0	7.49	31.99	63.58	10.78	373.29	27.05	76.32	18.76	8.62	146.28	86.11	32.80	22.32	23.84	0.00	13.16	22.01	18.49	32.37	0.00	8.90	15.02	38.51	7.78	27.66	0.00	170.06	27.45	21.36
33	ER5b	ExonRegion	0	6.66	2.68	6.70	7.82	38.29	7.01	9.52	7.17	3.92	16.65	7.59	12.14	5.19	5.04	0.00	13.19	14.15	3.56	2.45	0.90	2.61	0.85	5.87	3.37	4.80	5.58	18.04	7.07	2.30
34	E5_Db	KnownBoundary	0	8.49	0.00	0.00	0.00	25.20	0.00	8.30	0.00	0.00	12.74	8.89	9.52	1.62	5.12	0.00	0.00	8.55	4.62	0.00	3.56	0.00	0.00	0.00	4.90	3.83	6.05	3.98	6.11	0.00
35	E5b_E6a	KnownJunction	0	0.00	0.00	1.47	0.00	27.12	5.37	0.00	0.00	1.31	3.28	4.71	6.90	7.26	1.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.78	3.05	0.00	0.00	21.77	7.10	0.00
36	ER5c	ExonRegion	0	3.81	2.58	3.98	8.04	21.14	7.50	8.25	4.67	7.72	9.68	3.16	6.61	5.29	5.10	0.06	7.65	12.82	5.36	3.58	0.86	3.20	2.81	5.11	4.35	2.63	3.19	4.28	6.10	2.82
37	E5_Dc	NovelBoundary	0	3.01	0.00	8.99	8.41	7.37	10.44	13.79	0.00	3.11	3.91	1.27	5.90	4.94	4.25	0.00	3.06	7.18	0.00	0.00	3.97	0.00	0.00	2.27	3.05	3.14	2.19	1.89	4.27	3.47
38	E5c_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	Ix	Intron	0	2.67	2.00	1.04	0.00	7.59	3.42	3.13	1.15	2.80	6.29	2.59	4.40	2.01	2.25	0.00	5.40	6.03	3.59	1.99	0.00	1.33	0.56	1.12	0.00	0.89	2.93	1.14	5.58	0.42
40	Ix_AR1	ActiveIntronRegion	0	2.70	2.03	1.05	0.00	7.66	3.45	3.17	1.16	2.83	6.36	2.62	4.46	2.04	2.28	0.00	5.47	6.11	3.64	2.01	0.00	1.35	0.57	1.14	0.00	0.90	2.97	1.15	5.64	0.42
41	E6_Aa	NovelBoundary	0	0.00	4.36	1.54	0.00	0.00	10.97	9.90	0.00	1.52	7.59	0.00	9.28	0.00	6.54	8.37	7.19	16.66	9.25	0.00	0.00	0.00	0.00	1.97	0.00	1.89	1.63	14.51	10.11	7.40
42	ER6a	ExonRegion	0	10.24	24.78	71.78	37.29	325.74	34.76	72.70	11.56	6.87	143.41	69.74	47.85	20.48	32.25	10.70	20.72	32.97	17.10	17.95	6.81	13.79	23.70	45.69	13.86	20.42	19.45	225.69	17.80	26.98
43	E6_Da	NovelBoundary	0	17.40	3.78	4.11	0.00	0.00	1.80	0.00	2.39	3.01	3.75	0.00	8.49	1.34	2.15	0.00	0.00	5.09	9.25	16.18	0.00	3.69	1.85	2.02	5.38	0.00	2.19	0.00	8.49	0.00
44	E6a_E7a	KnownJunction	1	17.46	13.57	53.22	27.18	341.90	36.03	90.34	8.86	2.86	141.49	55.52	41.02	21.14	32.99	0.00	19.58	31.67	18.49	8.09	0.00	7.34	16.19	42.85	16.63	17.16	15.28	163.21	10.83	22.45
45	Ix	Intron	0	2.36	2.39	0.84	0.36	2.20	2.20	1.31	2.67	6.30	4.11	1.84	4.77	3.59	1.74	1.66	2.11	8.13	2.23	0.64	0.10	2.42	1.71	2.44	3.12	3.71	4.24	2.10	7.17	2.14
46	Ix_SR2	SilentIntronRegion	0	1.70	0.00	0.00	0.00	3.34	0.00	2.07	0.64	3.17	0.87	0.41	3.69	2.62	0.30	1.01	0.85	6.29	1.36	0.00	0.68	0.11	0.93	0.50	2.63	1.13	1.71	2.51	8.64	1.37
47	Ix_AR1	ActiveIntronRegion	0	2.07	1.80	1.47	0.90	3.07	2.23	1.01	2.47	6.56	4.76	0.90	4.71	3.10	1.25	2.63	2.81	10.82	2.45	0.40	0.00	3.19	1.02	2.54	3.36	3.54	1.54	2.46	7.27	1.60
48	Ix_SR1	SilentIntronRegion	0	2.83	3.70	0.55	0.00	1.07	2.88	1.33	3.50	7.10	4.60	3.14	5.20	4.34	2.63	1.01	1.91	6.40	2.33	1.05	0.00	2.51	2.58	2.98	3.07	4.71	7.43	1.67	6.63	2.88
49	E7_Aa	NovelBoundary	0	0.00	4.75	2.37	0.00	7.07	12.58	0.00	5.52	8.65	8.15	8.60	9.76	2.87	6.36	0.00	0.00	11.21	0.00	0.00	0.00	3.45	0.00	0.00	0.00	14.06	11.42	7.16	5.62	8.45
50	ER7a	ExonRegion	0	10.59	38.12	85.84	36.23	415.28	42.89	97.24	12.27	12.72	173.34	57.32	51.31	34.48	28.56	7.55	32.13	34.62	26.75	10.90	5.49	10.61	19.07	43.23	14.18	24.43	20.91	213.23	22.05	35.89
51	E7_Da	NovelBoundary	0	0.00	9.70	4.06	10.78	0.00	1.96	0.00	0.00	10.08	3.52	4.84	4.70	10.00	1.13	0.00	0.00	6.55	4.62	0.00	0.00	2.01	0.00	7.44	0.00	5.11	4.38	0.00	8.67	1.52
52	E7a_E8a	KnownJunction	0	7.61	58.85	102.60	37.96	505.48	35.18	57.73	4.13	9.74	138.81	58.62	43.76	27.93	25.48	0.00	25.40	32.32	27.61	15.96	4.13	14.32	13.27	48.17	13.88	31.71	30.47	267.27	34.60	46.88
53	Ix	Intron	0	3.53	2.12	0.55	0.00	1.61	1.81	0.00	1.21	2.22	2.38	1.17	2.63	1.49	2.53	0.00	0.00	2.95	0.63	1.05	0.00	2.35	0.59	2.38	0.00	2.35	3.10	0.00	5.90	0.44
54	Ix_SR1	SilentIntronRegion	0	3.55	3.04	0.65	0.00	2.31	1.78	0.00	0.84	2.01	1.93	1.28	2.57	1.90	2.45	0.00	0.00	3.50	0.91	1.51	0.00	2.93	0.85	3.35	0.00	2.98	4.05	0.00	6.67	0.63
55	Ix_AR1	ActiveIntronRegion	0	3.62	0.00	0.32	0.00	0.00	1.96	0.00	2.17	2.82	3.56	0.98	2.86	0.58	2.80	0.00	0.00	1.76	0.00	0.00	0.00	1.05	0.00	0.16	0.00	0.95	0.98	0.00	4.27	0.00
56	E8_Aa	NovelBoundary	0	2.65	0.00	1.30	0.00	0.00	3.91	0.00	0.00	13.86	7.27	0.00	4.49	9.08	0.00	0.00	0.00	11.95	0.00	0.00	0.00	0.00	0.00	5.02	0.00	1.48	3.82	0.00	5.98	1.52
57	ER8a	ExonRegion	0	11.03	24.52	66.78	34.33	348.04	37.63	51.95	8.88	13.88	123.32	47.27	36.83	27.77	19.35	7.10	22.15	39.99	25.14	12.51	3.91	18.45	13.39	33.38	15.05	22.12	20.68	189.30	25.99	24.21
58	E8_Da	KnownBoundary	0	4.78	33.25	57.63	37.10	390.68	13.66	52.98	29.26	21.74	144.44	45.74	40.42	30.35	14.91	0.00	20.27	47.61	9.25	8.09	4.13	16.28	14.88	30.88	8.97	23.11	9.83	311.60	29.88	29.45
59	ER8b	ExonRegion	0	11.12	39.83	47.70	57.78	399.87	36.84	52.59	12.49	27.29	131.13	68.61	40.62	46.23	22.23	11.00	29.98	39.78	19.30	14.92	5.36	15.79	15.66	33.57	26.54	32.84	19.55	345.61	26.24	40.18