Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HOXC4	Gene	0	34.60	53.19	34.77	59.24	9.47	37.45	37.16	55.71	44.26	81.35	58.76	22.35	97.69	48.44	92.65	68.37	12.50	42.19	56.47	39.01	26.58	35.65	50.62	55.10	41.60	25.93	28.76	107.93	56.24
2	303406	Transcript	0	1.60	2.20	3.00	6.25	0.52	1.98	2.87	3.70	1.68	4.93	1.79	0.68	1.98	2.34	2.49	2.74	3.27	4.00	2.03	0.48	1.93	0.63	2.42	1.50	1.00	2.28	0.00	3.16	1.48
3	430889	Transcript	0	49.14	55.52	48.33	104.87	26.85	139.98	55.31	100.90	35.60	216.78	125.02	30.20	230.27	92.59	112.83	180.48	15.07	70.29	54.20	89.67	70.28	76.81	125.56	66.95	85.31	38.87	54.59	193.62	145.74
4	ER1a	ExonRegion	0	0.00	0.59	0.00	0.00	0.45	0.28	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.04	0.00	0.42	0.26	0.00	0.00	0.00	0.13	0.00	0.00	0.00	0.00	0.00	0.00	0.17	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	9.39	0.00	0.00	0.00	1.13	0.00	2.98	6.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
6	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	5.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	Ix	Intron	0	0.12	1.39	0.67	0.45	0.12	1.89	0.05	0.29	0.29	3.37	0.23	0.04	0.43	0.43	0.64	5.10	1.61	0.99	0.84	0.19	0.54	0.10	0.20	0.06	0.56	0.12	0.00	0.24	0.23
8	Ix_AR1	ActiveIntronRegion	0	0.12	1.24	0.87	0.26	0.09	2.28	0.07	0.47	0.02	3.84	0.33	0.00	0.19	0.55	0.08	5.90	1.17	1.04	0.60	0.30	0.51	0.13	0.07	0.16	0.49	0.13	0.00	0.36	0.06
9	Ix_SR2	SilentIntronRegion	0	0.12	1.83	0.69	0.27	0.19	2.01	0.04	0.09	0.55	3.91	0.23	0.06	0.41	0.42	0.82	5.42	2.27	1.11	1.29	0.21	0.54	0.10	0.21	0.00	0.66	0.10	0.00	0.15	0.22
10	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	1.09	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00
11	Ix_SR1	SilentIntronRegion	0	0.99	0.00	0.00	0.00	0.00	0.42	0.00	0.00	0.00	2.23	0.00	0.00	0.00	0.14	0.71	1.92	1.15	1.19	0.49	0.00	0.22	0.05	0.28	0.00	0.00	0.40	0.00	0.00	0.00
12	Ix_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.36	0.00	0.00	0.00	0.00
13	Ix_AR5	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.31	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	1.02	1.23	0.79	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00
14	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
15	I1_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
16	I1_AR5	ActiveIntronRegion	0	0.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	0.00	0.00	0.00	0.28	0.00	0.00	0.00	0.57	1.95	0.00	0.44	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00
17	I1_SR3	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	0.66	1.16	0.00	0.00	0.00	0.00	0.00
18	I1_SR4	SilentIntronRegion	0	0.00	4.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I1_SR7	SilentIntronRegion	0	1.89	0.57	0.59	3.81	0.00	0.73	3.74	5.52	0.35	1.02	0.53	0.54	0.46	0.80	0.81	3.50	0.40	2.32	0.28	5.39	0.63	1.28	0.64	3.42	0.13	0.14	0.00	1.73	0.24
20	E2_Aa	NovelBoundary	0	0.00	0.00	3.41	10.35	0.00	0.00	2.75	0.00	0.00	0.00	0.00	0.00	1.43	0.97	0.00	0.00	1.28	13.87	0.00	12.40	1.52	1.94	0.00	0.00	1.63	0.00	0.00	1.93	0.00
21	ER2a	ExonRegion	0	3.41	7.13	5.29	31.25	2.13	4.56	11.66	16.29	3.35	6.71	5.85	2.16	5.72	7.06	12.45	10.27	4.94	19.99	5.61	2.40	3.58	3.14	7.94	4.69	5.01	7.90	0.02	10.52	6.02
22	E2_Da	NovelBoundary	0	18.11	3.88	33.41	83.04	7.22	7.10	17.28	16.17	4.45	8.55	4.18	12.23	11.43	20.47	25.31	38.40	13.93	14.64	16.18	11.41	10.43	17.75	28.56	19.32	12.09	23.90	7.31	27.23	3.37
23	E2a_E3b	KnownJunction	0	4.60	0.00	9.69	0.00	0.00	1.61	2.69	2.19	5.06	3.32	3.10	0.00	1.59	2.57	0.00	0.00	4.97	0.00	0.00	0.00	1.64	0.00	4.14	2.81	0.00	1.93	0.00	1.80	1.39
24	I2	Intron	0	16.09	9.31	13.32	24.94	5.37	6.17	12.93	15.85	7.96	11.50	10.35	7.96	11.74	20.55	20.21	26.92	7.38	25.37	16.38	6.78	6.79	7.59	11.42	13.79	10.47	10.50	4.53	20.45	5.70
25	I2_AR1	ActiveIntronRegion	0	4.47	6.38	7.63	11.91	0.00	1.26	0.86	0.11	0.00	0.95	1.33	0.00	3.90	3.65	5.28	0.94	1.63	1.95	4.27	0.00	2.36	1.96	1.50	0.00	2.12	0.00	1.78	5.45	1.34
26	I2_SR1	SilentIntronRegion	0	6.43	6.57	9.14	14.63	0.00	2.75	2.88	1.84	0.00	1.44	2.38	0.00	6.50	5.44	11.20	2.53	3.01	5.46	1.94	0.80	2.85	3.61	1.81	0.00	5.72	0.00	1.83	9.78	2.68
27	I2_AR2	ActiveIntronRegion	0	6.43	6.57	10.10	14.63	0.00	2.75	4.03	1.84	0.00	1.44	2.38	0.41	6.50	5.44	11.20	3.94	3.01	4.85	4.53	2.81	2.85	3.61	2.41	0.00	5.72	0.00	1.83	9.78	2.68
28	I2_AR3	ActiveIntronRegion	0	5.23	4.56	4.98	7.31	2.62	2.69	11.70	14.65	3.10	2.17	2.85	3.72	4.36	7.77	11.86	12.98	4.51	18.99	7.01	5.32	1.03	7.42	3.15	9.76	6.33	7.76	4.16	5.80	3.13
29	I2_SR2	SilentIntronRegion	0	22.28	9.86	14.97	26.49	4.48	7.38	14.59	16.33	9.29	13.92	9.50	9.78	11.74	26.76	26.27	33.80	8.45	29.62	18.49	7.88	8.02	8.97	13.93	17.74	12.96	12.29	3.84	19.75	5.89
30	I2_AR4	ActiveIntronRegion	0	9.38	15.81	20.67	51.29	17.69	8.49	15.40	27.46	14.44	20.57	31.77	11.08	27.45	20.60	12.50	32.35	10.35	31.17	28.79	8.27	12.09	5.23	18.11	11.04	9.69	13.94	10.72	54.69	11.40
31	E3_Aa	NovelBoundary	0	113.43	179.46	103.22	574.17	104.93	121.40	200.14	162.14	33.65	197.29	254.41	99.18	473.78	116.63	212.67	429.23	29.89	152.58	185.68	98.41	54.43	103.70	193.60	106.05	118.28	114.24	170.51	885.91	294.35
32	ER3a	ExonRegion	0	49.14	55.52	48.33	104.87	26.85	139.98	55.31	100.90	35.60	216.78	125.02	30.20	230.27	92.59	112.83	180.48	15.07	70.29	54.20	89.67	70.28	76.81	125.56	66.95	85.31	38.87	54.59	193.62	145.74
33	E3_Ab	KnownBoundary	0	96.15	121.96	168.30	193.91	38.91	217.93	119.18	183.49	85.33	337.86	246.97	67.62	505.56	217.29	151.68	282.97	32.98	75.52	56.65	147.04	112.99	131.51	218.47	136.38	178.78	79.09	132.29	447.20	350.67
34	ER3b	ExonRegion	0	71.89	56.69	73.80	115.62	10.98	46.98	40.43	89.23	28.31	103.31	69.83	42.55	172.50	85.97	100.21	115.27	23.48	72.80	71.31	65.72	30.36	69.19	79.56	62.46	48.09	33.79	28.64	159.49	105.67
35	E3_Da	NovelBoundary	0	5.96	7.17	1.54	8.41	0.00	0.00	0.00	0.00	5.94	2.04	0.00	0.00	0.00	5.25	0.00	16.60	3.24	5.14	0.00	0.00	2.05	4.81	0.00	5.80	0.00	0.00	0.00	2.11	0.00
36	E3a_E4a	KnownJunction	1	57.10	53.52	73.45	72.47	0.00	43.70	31.53	105.75	39.65	146.84	71.62	31.35	150.08	74.25	131.95	76.88	11.68	27.74	129.48	67.48	34.17	62.52	87.07	64.72	71.72	85.40	34.79	231.62	128.39
37	I3	Intron	0	1.66	3.84	1.73	4.64	0.00	3.38	2.61	3.57	5.37	8.80	1.85	3.11	1.67	3.64	5.34	9.94	6.96	5.24	4.14	0.71	1.66	1.40	0.70	4.47	3.70	0.61	0.24	2.95	1.82
38	I3_SR1	SilentIntronRegion	0	1.67	3.85	1.74	4.66	0.00	3.40	2.62	3.59	5.40	8.84	1.86	3.13	1.68	3.65	5.37	9.99	7.00	5.26	4.16	0.72	1.67	1.41	0.71	4.49	3.72	0.61	0.24	2.97	1.82
39	E4_Aa	NovelBoundary	0	0.00	21.33	5.31	28.26	0.00	0.00	5.78	6.47	6.09	7.15	2.78	3.46	3.22	5.89	0.00	20.50	3.85	4.62	0.00	0.00	0.00	0.00	0.00	0.00	3.22	0.00	0.00	5.89	1.32
40	ER4a	ExonRegion	0	39.51	81.23	38.99	67.23	13.30	51.14	55.41	71.78	75.55	113.82	85.32	27.05	120.25	59.78	140.88	84.72	14.82	51.84	82.70	49.29	38.42	41.68	65.30	82.97	60.94	36.58	44.35	146.17	66.10
41	ER4b	ExonRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.33	0.00	1.24	2.60	0.91	0.00	0.00	0.00	0.00	4.53	0.00	4.28	0.00	0.00	0.00	0.00	1.57	0.00	1.63	0.00
42	IG44_SR3	SilentIntergenicRegion	0	0.00	0.41	0.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.54	0.00	0.00	0.44	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00
43	IG44_AR5	ActiveIntergenicRegion	0	0.79	0.00	1.79	1.43	0.00	0.73	1.34	0.56	3.24	2.50	0.65	0.80	1.46	0.14	2.80	3.19	4.79	0.00	0.00	1.22	1.19	0.09	0.44	2.23	0.29	0.00	0.00	2.03	0.20
44	IG44_AR7	ActiveIntergenicRegion	0	4.75	1.54	1.65	1.59	0.00	4.18	20.62	5.93	7.94	7.09	4.93	1.79	8.38	3.57	13.18	5.93	4.57	2.43	2.58	0.68	3.39	4.88	4.01	5.01	2.82	3.61	0.45	8.50	2.14
45	IG44_SR8	SilentIntergenicRegion	0	2.51	0.74	1.58	2.44	0.00	2.82	2.45	1.43	3.93	2.89	1.55	1.50	1.15	2.21	5.77	5.97	6.34	0.13	3.34	0.00	2.15	0.94	0.48	1.83	3.06	1.17	0.00	1.88	0.00