Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C12orf66	Gene	0	40.46	25.77	34.18	87.72	99.37	42.28	62.10	58.51	22.28	44.23	58.09	37.05	39.30	36.44	53.64	33.14	28.86	30.73	79.82	91.97	55.92	34.65	35.20	30.34	32.79	34.26	48.70	49.13	69.95
2	398055	Transcript	0	8.42	11.89	9.63	33.93	36.91	21.86	27.61	11.29	11.68	17.26	27.23	14.32	14.37	10.43	29.08	10.36	10.78	12.21	37.90	38.42	29.28	6.36	10.07	15.24	12.18	8.52	22.77	13.75	27.69
3	311915	Transcript	0	2.69	4.92	1.90	36.45	15.45	4.50	12.21	7.36	12.98	9.36	14.92	9.52	10.44	15.08	1.59	11.89	6.11	5.96	20.37	11.30	13.41	4.23	7.39	8.22	7.69	13.49	12.89	26.67	4.53
4	IG48_AR6	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	2.02	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.66	0.00	1.68
5	IG48_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.05	4.09	1.49	0.00	0.00	1.92	0.76	0.00	0.00	0.00	0.00	1.72	0.00	1.03	0.00	2.70
6	IG48_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.16	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00	0.00	0.00	0.28	0.00	0.00	0.00	0.00	0.00	0.17	0.49	0.00	0.00	0.00	0.00	4.02
7	IG48_AR1	ActiveIntergenicRegion	0	1.78	0.00	1.39	11.89	11.14	0.00	1.25	2.89	0.47	0.30	0.00	3.20	1.74	0.00	15.25	1.54	0.20	2.00	5.30	7.72	1.18	2.24	0.75	0.00	1.78	4.24	1.52	6.77	2.91
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	0	20.66	7.37	9.62	101.56	62.25	7.61	24.63	23.95	8.21	14.24	14.09	15.89	15.92	16.42	14.06	31.57	16.81	28.86	40.95	46.65	21.63	23.84	21.52	8.14	13.82	26.52	12.32	22.07	28.13
10	E1_Da	NovelBoundary	0	6.78	0.00	0.00	0.00	0.00	2.95	34.16	2.49	1.55	0.00	5.16	4.34	0.00	4.32	0.00	0.00	2.90	9.25	16.18	4.05	0.00	0.00	7.39	2.81	0.00	0.00	6.71	10.38	4.85
11	E1a_E2a	KnownJunction	0	19.23	13.38	12.88	8.84	13.71	11.55	65.28	49.72	13.79	41.46	60.33	48.28	38.05	30.29	49.03	59.29	35.92	42.38	56.65	87.41	29.88	37.14	73.63	27.34	31.52	48.28	30.51	65.82	56.62
12	I1_AR1	ActiveIntronRegion	0	3.82	2.21	2.41	17.35	2.34	4.22	7.74	1.19	2.55	1.68	0.98	1.14	0.40	1.81	1.29	2.06	3.74	3.79	7.32	3.10	3.96	0.37	0.87	1.03	0.69	0.54	1.63	3.91	0.87
13	I1_AR2	ActiveIntronRegion	0	0.79	0.42	0.00	0.94	1.91	2.37	1.38	0.00	1.21	0.14	2.22	1.50	0.00	0.52	3.48	1.29	0.95	0.50	4.17	0.72	1.67	0.00	0.00	2.08	0.37	0.41	0.00	0.61	0.24
14	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	3.73	0.00	0.00	0.27	0.83	0.11	0.06	0.00	0.91	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	1.63	1.34
15	I1_SR2	SilentIntronRegion	0	0.65	0.49	0.00	1.09	2.97	1.33	1.53	0.00	0.77	1.10	2.36	1.13	0.00	0.36	0.00	1.89	0.69	1.82	3.89	3.12	4.13	0.00	0.00	0.71	0.65	1.44	2.23	0.27	0.55
16	E2_Aa	NovelBoundary	0	2.30	0.00	2.59	0.00	0.00	0.00	2.52	4.73	0.00	4.07	0.00	0.00	0.00	2.02	0.00	3.82	0.00	0.00	0.00	0.00	1.68	0.00	0.00	2.93	3.26	0.00	0.00	1.89	1.58
17	ER2a	ExonRegion	0	66.43	19.80	44.93	105.42	132.01	35.95	81.21	104.54	16.56	50.03	63.97	58.69	51.26	62.55	44.51	50.72	41.79	38.52	70.61	110.02	47.54	55.41	58.11	32.68	43.93	51.07	39.03	63.21	70.55
18	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00
19	E2a_E3a	KnownJunction	0	86.12	52.26	53.62	175.14	112.00	68.83	102.41	152.33	18.61	70.98	119.39	80.51	63.21	78.68	96.67	54.08	44.01	60.75	89.02	131.91	79.70	76.18	76.44	38.28	56.64	102.99	75.04	92.56	80.98
20	ER3a	ExonRegion	0	77.16	39.41	64.53	113.12	146.59	58.37	86.53	112.78	28.58	70.76	81.30	52.64	61.98	59.98	69.16	48.41	41.78	43.32	106.97	131.84	71.49	66.80	56.93	39.47	51.27	58.88	72.93	88.55	112.48
21	E3_Da	KnownBoundary	0	22.71	35.39	39.29	96.20	53.94	19.18	42.17	32.65	26.86	17.86	45.71	24.40	19.58	22.89	45.64	3.67	19.88	0.00	0.00	43.00	35.82	34.47	23.44	32.12	16.14	18.28	51.44	38.55	50.81
22	E3a_E4a	KnownJunction	0	2.71	4.65	2.72	55.22	6.93	3.91	13.96	4.78	11.66	9.47	14.11	14.49	10.48	18.21	0.00	14.99	6.69	0.00	0.00	7.53	14.40	4.76	4.83	8.67	7.01	14.12	8.55	29.56	2.05
23	ER3b	ExonRegion	0	16.84	23.78	19.26	67.85	73.82	43.72	53.53	22.58	23.36	34.52	54.45	28.64	28.75	20.86	58.16	20.73	21.55	22.14	75.80	76.83	58.56	12.73	20.14	30.48	23.89	17.03	45.53	27.50	55.38
24	E3_Db	NovelBoundary	0	8.14	4.36	24.99	36.24	25.35	7.29	12.47	27.02	17.14	24.17	35.68	11.02	10.99	16.04	43.05	10.02	10.51	13.87	56.65	22.33	34.17	10.40	20.04	25.18	17.35	14.50	15.95	25.34	25.52
25	I3	Intron	0	4.47	14.12	4.77	12.12	22.29	16.44	11.94	6.91	16.42	13.75	15.15	9.38	9.10	7.56	21.86	11.78	9.01	7.25	37.65	21.12	23.29	3.76	7.06	12.56	5.77	6.00	12.34	11.05	20.88
26	I3_SR1	SilentIntronRegion	0	8.44	2.57	16.20	41.75	40.53	18.72	21.59	26.53	20.43	18.05	20.06	15.33	14.60	12.31	37.47	14.72	12.04	12.31	41.47	22.38	24.37	6.05	11.97	16.06	12.21	27.15	16.47	30.93	20.99
27	I3_AR1	ActiveIntronRegion	0	3.37	2.41	8.84	25.67	31.01	6.62	1.89	22.84	5.43	6.07	9.47	4.72	4.32	6.76	19.20	7.54	2.47	1.11	16.63	18.70	13.59	7.03	5.13	6.50	9.77	11.03	3.07	8.65	7.18
28	I3_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	I3_AR2	ActiveIntronRegion	1	5.91	20.71	4.65	16.23	30.76	24.98	20.68	6.91	19.95	15.45	18.45	12.74	11.22	9.36	31.67	14.18	11.07	10.21	59.29	36.19	33.32	5.37	8.52	16.54	5.87	4.70	17.63	10.95	34.43
30	I3_SR3	SilentIntronRegion	0	2.58	13.05	2.56	6.35	11.79	9.17	3.06	2.04	5.25	11.74	13.26	5.49	5.02	5.18	11.47	7.01	4.77	4.28	21.77	7.07	17.52	2.30	5.74	4.86	4.22	2.97	7.13	6.45	8.87
31	I3_AR3	ActiveIntronRegion	0	4.02	7.98	5.40	5.25	16.22	11.56	7.25	8.62	26.25	15.91	14.84	8.69	11.10	8.08	15.17	15.06	11.86	5.03	22.53	13.77	16.58	2.31	6.49	16.54	6.56	9.31	10.71	15.33	13.58
32	I3_AR4	ActiveIntronRegion	0	2.34	9.67	3.87	4.41	14.72	8.84	1.94	3.01	13.12	8.00	4.98	4.31	5.41	2.63	10.81	7.80	6.15	5.97	15.75	3.60	8.81	1.35	3.55	7.58	4.52	1.33	6.01	6.65	9.64
33	E4_Aa	NovelBoundary	1	6.96	12.60	6.03	9.71	6.34	5.60	0.00	2.09	16.20	14.62	17.37	10.81	10.95	9.04	7.37	10.56	13.28	9.25	56.65	7.28	36.18	3.99	6.80	18.60	8.98	3.73	16.65	24.49	9.11
34	ER4a	ExonRegion	1	2.66	5.19	1.08	17.69	23.97	5.09	10.46	9.95	14.29	9.25	15.73	4.55	10.41	11.94	3.18	8.79	5.54	11.91	40.73	15.08	12.41	3.70	9.95	7.76	8.36	12.87	17.23	23.77	7.02
35	IG47_AR7	ActiveIntergenicRegion	0	9.22	16.97	11.70	27.64	47.57	16.54	20.47	13.24	24.59	19.87	31.02	23.64	31.75	21.15	41.44	24.48	20.78	11.93	40.66	25.09	22.61	11.04	16.52	28.35	19.31	19.64	34.22	42.04	20.40
36	IG47_AR6	ActiveIntergenicRegion	0	5.31	19.48	13.46	30.88	38.20	23.58	19.47	29.76	36.62	26.21	43.45	24.79	33.20	18.38	47.15	23.98	24.92	7.89	44.05	26.45	33.05	14.51	14.68	25.97	15.07	25.98	29.46	34.70	42.54
37	IG47_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.50	0.66	0.40	0.54	1.51	0.06	0.69	1.18	0.53	1.77	0.00	1.58	0.00	0.00	0.42	0.40	0.00	0.00	0.00	0.55
38	IG47_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	IG47_AR1	ActiveIntergenicRegion	0	0.00	4.52	0.39	0.00	0.00	1.61	0.71	0.22	2.36	0.51	0.97	0.00	0.83	0.79	0.00	0.00	1.40	1.16	0.75	0.79	2.84	0.42	0.63	6.79	1.67	1.84	3.00	1.14	0.70