Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AMIGO2	Gene	0	34.39	70.26	55.41	9.25	5.23	61.86	98.95	6.73	36.53	45.18	58.24	38.46	35.58	128.43	66.20	57.45	190.88	14.70	24.70	78.19	54.49	24.71	21.40	90.36	39.63	45.85	26.43	63.48	24.24
2	429635	Transcript	0	15.14	25.01	21.31	0.00	1.63	14.47	25.05	3.44	8.21	15.03	7.48	17.49	8.29	50.85	26.42	27.90	67.52	6.61	6.66	13.68	14.66	13.46	7.24	20.88	15.18	23.23	3.31	36.06	5.60
3	266581	Transcript	0	10.41	13.49	16.66	0.20	0.23	6.10	13.13	1.47	1.99	6.66	1.65	3.52	4.64	19.18	16.29	3.96	31.21	7.24	4.50	15.46	7.29	6.99	5.03	10.84	2.88	4.30	6.71	8.90	2.40
4	ER1a	ExonRegion	0	20.39	12.26	21.42	4.48	2.54	11.10	28.04	1.95	3.32	12.54	6.45	7.13	7.60	40.48	27.07	24.17	44.67	9.17	5.00	24.67	11.57	11.19	7.40	14.98	7.57	18.63	5.61	27.61	6.15
5	E1_Da	NovelBoundary	0	7.96	0.00	1.47	0.00	0.00	8.40	7.78	0.00	4.26	3.95	2.91	2.80	0.00	16.31	29.90	7.27	14.65	4.62	0.00	7.94	1.80	2.04	0.00	11.31	0.00	0.00	0.00	1.71	3.40
6	E1a_E2a	KnownJunction	0	14.92	33.06	25.46	0.00	0.00	13.85	47.26	4.53	7.83	19.77	7.37	15.84	12.58	50.41	56.21	45.06	72.50	9.25	0.00	3.47	14.68	18.77	11.43	16.27	14.06	23.35	8.85	47.00	9.74
7	E1a_E3a	KnownJunction	0	20.64	22.69	33.31	0.00	0.00	10.70	22.71	2.49	1.71	12.94	2.82	5.84	8.02	36.09	25.51	6.43	54.31	13.87	8.09	28.20	13.32	13.66	9.65	18.96	5.42	8.07	13.22	17.43	4.29
8	I1	Intron	0	6.36	4.97	0.90	0.00	0.00	1.85	4.35	0.50	0.61	2.34	1.61	3.00	0.35	11.97	9.66	5.17	10.88	3.21	3.45	7.23	1.92	0.00	0.00	6.39	1.54	2.12	1.48	6.60	0.90
9	I1_SR1	SilentIntronRegion	0	6.43	5.02	0.91	0.00	0.00	1.87	4.40	0.50	0.61	2.36	1.62	3.03	0.35	12.09	9.76	5.22	10.99	3.24	3.49	7.30	1.95	0.00	0.00	6.45	1.56	2.14	1.50	6.66	0.90
10	E2_Aa	NovelBoundary	0	3.01	13.86	11.16	0.00	0.00	10.93	7.32	2.54	2.89	7.35	4.68	3.37	0.00	35.49	42.85	13.39	75.36	4.62	0.00	3.72	8.90	2.14	0.00	7.72	5.15	4.38	0.00	11.41	3.83
11	ER2a	ExonRegion	1	28.24	33.62	21.19	0.00	4.88	28.15	27.88	5.79	12.30	22.07	15.06	29.37	10.63	82.97	23.06	38.66	89.75	10.60	11.89	30.70	24.00	21.62	10.30	38.36	28.03	44.14	1.08	55.60	7.05
12	E2_Da	NovelBoundary	0	6.78	15.03	13.11	0.00	0.00	10.47	11.33	0.00	3.05	4.55	8.00	4.55	4.84	41.52	7.37	16.37	70.72	4.50	0.00	4.13	3.05	9.87	6.16	15.91	13.83	12.96	0.00	13.93	0.00
13	E2a_E3a	KnownJunction	0	2.24	8.34	17.29	0.00	0.00	1.42	0.00	0.00	4.51	3.24	0.00	7.26	1.66	19.17	0.00	0.00	40.31	0.00	8.09	6.86	5.29	0.00	0.00	8.02	3.45	2.19	0.00	5.57	0.00
14	I2	Intron	0	2.70	0.00	0.00	0.00	0.00	4.33	1.27	0.00	0.71	0.91	1.50	0.78	0.00	8.84	6.91	0.00	1.88	1.21	4.02	1.25	0.00	0.00	0.00	0.00	0.90	1.98	0.00	3.08	0.00
15	I2_SR1	SilentIntronRegion	0	2.92	0.00	0.00	0.00	0.00	4.49	1.37	0.00	0.73	0.98	1.62	0.84	0.00	9.43	7.47	0.00	2.00	1.31	4.34	1.35	0.00	0.00	0.00	0.00	0.97	2.14	0.00	3.33	0.00
16	E3_Aa	NovelBoundary	0	17.28	0.00	14.72	0.00	0.00	1.50	0.00	0.00	1.34	5.51	2.66	4.10	0.00	18.10	7.77	6.73	50.24	5.39	0.00	8.27	3.45	1.99	0.00	2.93	1.67	6.31	0.00	1.93	0.00
17	ER3a	ExonRegion	0	49.82	107.19	83.64	13.79	7.51	95.20	150.53	9.99	56.54	68.84	91.23	58.56	54.60	193.48	97.17	85.10	290.30	21.08	37.76	118.13	83.56	36.36	32.25	139.22	60.71	67.73	41.11	93.79	37.14
18	E3_Da	KnownBoundary	1	2.95	56.81	0.00	0.00	19.31	24.48	57.84	3.98	63.74	7.19	11.89	3.86	12.71	42.25	25.91	18.05	104.44	0.00	16.18	18.36	30.76	3.84	0.00	30.33	6.55	1.76	0.00	6.25	4.85
19	ER3b	ExonRegion	0	0.17	4.30	0.00	0.41	0.46	1.49	3.54	0.45	2.27	0.39	0.48	1.20	1.25	2.27	7.07	1.50	8.11	0.61	0.90	2.71	1.27	0.33	0.41	2.72	0.35	0.54	0.21	0.36	0.51
20	IG12_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.63	1.96	0.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00