Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BHLHE41	Gene	0	96.53	120.85	0.29	1.35	104.10	108.41	5.31	5.22	15.03	23.60	41.09	4.73	15.95	80.06	10.91	42.36	9.23	95.93	24.67	14.08	142.99	52.83	73.55	72.98	54.83	23.51	321.57	1.10	44.14
2	242728	Transcript	0	279.79	207.06	0.53	1.19	251.02	251.53	6.00	13.64	25.19	64.27	89.70	9.58	31.49	227.15	10.61	103.04	15.02	216.01	40.99	31.23	319.65	141.44	192.70	133.62	137.81	49.78	473.95	3.16	95.59
3	ER1a	ExonRegion	0	167.74	99.34	0.48	3.11	165.69	97.13	4.37	8.51	7.93	27.59	45.86	5.62	20.65	99.91	8.88	54.77	7.67	130.10	22.89	17.52	125.72	109.37	107.67	46.71	67.54	29.98	275.11	0.82	51.98
4	E1_Da	NovelBoundary	0	21.53	13.57	0.00	0.00	0.00	3.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.54	0.00	3.82	0.00	5.39	0.00	0.00	6.06	4.33	2.41	2.27	3.60	0.00	6.81	0.00	3.33
5	E1a_E2a	KnownJunction	0	193.41	150.56	0.00	0.00	187.75	135.02	0.00	0.00	15.17	41.54	65.36	5.69	21.56	185.16	0.00	83.46	8.91	163.75	24.28	20.34	205.73	119.26	127.70	80.81	93.88	22.83	418.85	3.95	73.39
6	Ix	Intron	0	6.48	0.00	0.00	0.00	9.23	4.15	0.00	0.00	1.06	2.18	2.25	0.00	0.00	2.22	0.00	4.69	0.56	5.09	2.41	2.08	3.23	2.04	2.05	1.63	4.32	1.19	20.07	0.00	0.00
7	Ix_SR1	SilentIntronRegion	0	6.58	0.00	0.00	0.00	9.36	4.22	0.00	0.00	1.07	2.21	2.28	0.00	0.00	2.26	0.00	4.76	0.57	5.17	2.45	2.11	3.28	2.07	2.08	1.65	4.38	1.21	20.37	0.00	0.00
8	E2_Aa	NovelBoundary	0	8.55	4.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	5.13	6.27	0.00	0.00	1.15	9.25	0.00	0.00	5.41	2.19	1.97	5.20	3.49	0.00	16.40	0.00	4.82
9	ER2a	ExonRegion	0	323.33	258.84	0.56	0.00	404.52	290.85	4.57	16.17	25.72	92.18	118.64	6.53	44.17	262.34	17.15	141.60	13.37	306.39	77.43	43.96	346.21	142.59	242.48	156.13	193.07	53.41	529.77	2.24	156.07
10	E2_Da	NovelBoundary	0	5.78	3.97	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	9.25	0.00	0.00	1.52	3.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2a_E3a	KnownJunction	0	399.39	281.16	1.54	0.00	484.85	324.63	8.12	26.48	33.25	106.93	146.37	7.23	56.75	311.50	16.34	139.07	22.51	356.39	56.42	41.10	459.58	195.05	276.78	198.77	239.55	73.64	692.73	6.56	189.99
12	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	4.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix_AR1	ActiveIntronRegion	0	5.45	0.51	0.00	0.00	0.00	0.44	0.00	0.00	0.18	0.46	0.00	0.00	0.00	1.87	0.00	0.00	0.00	7.39	2.03	0.00	0.91	0.00	0.00	1.71	0.23	0.00	0.00	0.00	0.00
14	E3_Aa	NovelBoundary	0	3.01	4.46	0.00	0.00	0.00	3.38	0.00	0.00	1.80	0.00	0.00	2.29	1.56	3.06	7.37	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER3a	ExonRegion	0	312.95	275.17	0.46	0.00	284.59	303.52	6.38	7.81	23.06	82.21	140.92	10.57	34.97	286.89	11.62	118.34	18.82	237.69	56.24	40.05	385.39	136.29	244.52	146.66	162.03	59.46	701.17	4.09	102.22
16	E3_Da	NovelBoundary	0	39.87	0.00	0.00	0.00	0.00	15.35	5.26	0.00	1.55	0.00	3.01	0.00	0.00	10.04	0.00	0.00	0.00	28.51	0.00	0.00	22.70	0.00	4.48	7.72	3.33	1.80	12.47	0.00	0.00
17	E3a_E4a	KnownJunction	0	357.63	318.19	0.00	0.00	239.04	337.52	8.41	7.32	48.54	63.27	101.64	16.51	26.11	266.39	0.00	105.34	14.81	218.07	40.46	34.07	435.28	164.62	227.44	178.85	155.48	38.58	486.49	3.86	90.13
18	Ix	Intron	0	67.57	5.97	0.00	0.00	8.30	14.45	1.87	1.42	1.47	2.90	7.17	0.19	0.70	16.15	3.97	9.37	1.15	27.09	3.46	6.27	13.67	1.67	1.96	15.63	5.74	2.91	21.80	0.00	0.83
19	Ix_AR1	ActiveIntronRegion	0	67.98	6.01	0.00	0.00	8.35	14.53	1.88	1.43	1.48	2.92	7.22	0.19	0.70	16.25	4.00	9.42	1.16	27.26	3.48	6.31	13.75	1.68	1.97	15.72	5.78	2.93	21.92	0.00	0.83
20	E4_Aa	NovelBoundary	0	99.27	9.70	0.00	0.00	0.00	12.55	0.00	0.00	1.55	3.04	0.00	0.00	0.00	21.03	0.00	16.52	1.19	9.25	0.00	0.00	13.12	0.00	0.00	11.31	6.63	2.19	10.14	0.00	1.68
21	ER4a	ExonRegion	0	336.95	198.71	1.47	6.53	202.38	285.49	6.03	24.15	25.16	68.59	83.96	16.43	38.51	293.96	13.90	119.64	20.42	222.45	36.57	29.86	346.06	174.79	243.13	136.85	148.71	57.11	499.53	3.67	95.85
22	E4_Da	NovelBoundary	0	61.93	4.56	0.00	0.00	6.93	0.00	0.00	0.00	3.99	1.88	6.45	0.00	0.00	6.85	0.00	3.82	1.40	42.13	8.09	3.47	7.18	2.29	2.22	5.14	1.59	4.29	7.21	0.00	0.00
23	E4a_E5a	KnownJunction	0	358.87	169.18	0.00	0.00	208.97	396.68	10.76	28.52	32.95	78.01	70.51	13.67	27.32	278.80	16.74	131.58	20.06	230.79	32.37	42.51	447.67	193.55	210.20	188.42	136.50	93.30	358.72	2.29	63.55
24	Ix	Intron	0	50.03	4.28	0.00	0.00	7.02	3.04	1.78	0.20	0.68	0.64	3.16	0.27	0.00	6.06	3.35	6.51	0.50	14.39	3.53	4.40	5.68	3.79	2.60	5.71	3.48	2.96	14.39	0.00	1.04
25	Ix_SR1	SilentIntronRegion	0	52.22	4.55	0.00	0.00	6.23	2.18	1.30	0.00	0.60	0.48	3.59	0.23	0.00	5.05	3.08	6.15	0.27	12.53	2.73	3.91	4.23	3.78	3.02	6.08	2.83	2.17	9.67	0.00	0.33
26	Ix_AR1	ActiveIntronRegion	0	47.17	3.89	0.00	0.00	8.35	4.42	2.56	0.52	0.82	0.89	2.53	0.35	0.00	7.70	3.82	7.15	0.85	17.44	4.83	5.21	8.02	3.85	1.98	5.20	4.53	4.20	21.92	0.00	2.16
27	E5_Aa	NovelBoundary	0	66.42	0.00	0.00	0.00	11.49	9.05	0.00	7.32	1.77	0.00	3.16	0.00	4.84	5.27	0.00	15.07	0.00	41.10	8.09	0.00	13.28	0.00	11.97	11.25	3.79	18.88	37.52	0.00	7.23
28	ER5a	ExonRegion	0	67.89	112.38	0.22	1.05	81.35	92.94	5.36	3.86	14.98	18.14	34.02	3.97	13.39	59.37	10.88	33.57	8.59	78.42	22.28	11.63	125.22	37.43	54.35	69.42	43.56	19.74	303.16	0.91	37.13