Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF202	Gene	0	46.40	33.05	82.05	53.02	63.64	49.92	32.25	43.74	38.75	52.10	40.61	47.02	47.90	39.31	35.94	52.06	52.53	50.02	20.41	47.67	79.78	29.72	27.90	44.40	32.59	28.15	36.51	41.11	37.64
2	336139	Transcript	0	31.01	23.86	62.40	31.48	52.02	35.95	19.41	28.02	21.55	37.61	26.28	35.10	30.84	30.31	16.14	40.81	38.02	46.27	14.15	34.29	54.19	25.38	24.11	24.54	23.67	19.87	24.32	33.31	25.75
3	ER1a	ExonRegion	0	15.14	0.77	29.94	13.67	10.85	10.89	9.33	2.20	4.21	8.87	12.76	14.10	5.77	6.09	5.08	13.60	9.33	23.92	9.14	18.73	22.94	6.37	10.39	4.02	3.89	11.07	2.62	21.39	6.07
4	E1_Da	NovelBoundary	0	0.00	0.00	1.45	0.00	7.37	0.00	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	E1a_E2a	KnownJunction	0	0.00	4.56	54.17	0.00	12.82	8.59	10.24	2.54	5.09	11.46	9.71	18.49	3.22	8.38	0.00	13.69	18.84	9.25	0.00	16.54	17.65	2.48	4.43	0.00	3.11	13.90	0.00	14.20	14.59
6	E1a_E4a	NovelJunction	0	2.42	0.00	8.50	0.00	0.00	6.68	2.69	5.08	0.00	5.11	3.76	1.42	1.53	6.85	0.00	0.00	3.89	4.62	0.00	8.27	5.62	2.48	4.88	2.45	1.55	10.64	0.00	0.00	1.58
7	I1	Intron	0	5.44	1.04	1.89	0.77	1.58	2.08	0.22	0.10	0.00	2.50	0.32	0.63	0.07	1.19	0.00	1.66	1.37	5.29	0.35	1.77	1.16	0.00	0.20	0.35	0.62	0.84	0.10	1.23	0.00
8	I1_SR1	SilentIntronRegion	0	5.45	1.05	1.90	0.78	1.59	2.08	0.22	0.10	0.00	2.50	0.32	0.63	0.07	1.20	0.00	1.67	1.37	5.30	0.35	1.77	1.16	0.00	0.20	0.35	0.62	0.85	0.10	1.24	0.00
9	E2_Aa	NovelBoundary	0	5.54	3.68	3.09	0.00	6.63	3.38	0.00	0.00	0.00	1.96	0.00	1.27	0.00	1.11	0.00	0.00	2.21	0.00	0.00	3.47	2.05	0.00	0.00	0.00	0.00	0.00	0.00	4.40	0.00
10	ER2a	ExonRegion	1	22.94	3.12	22.30	3.05	14.32	12.52	4.69	8.12	3.87	13.61	5.22	13.80	4.96	10.91	0.14	14.21	14.39	26.15	1.36	20.61	15.35	7.35	4.58	4.54	3.22	6.94	4.72	17.66	8.80
11	E2_Da	NovelBoundary	0	21.71	9.70	8.00	0.00	0.00	5.10	0.00	2.44	5.21	7.55	1.58	1.20	3.50	5.07	0.00	9.41	5.56	13.74	0.00	0.00	9.02	0.00	2.51	3.05	10.84	3.78	0.00	0.00	1.65
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	12.82	0.00	2.29	0.00	0.00	0.00	6.01	0.00	1.53	0.00	0.00	3.60	1.17	0.00	0.00	0.00	0.00	4.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2a_E4a	NovelJunction	0	2.24	4.07	1.54	0.00	7.37	1.73	0.00	4.63	1.55	1.88	2.53	1.30	9.36	4.32	0.00	10.25	2.12	27.74	0.00	3.14	10.35	1.90	4.04	2.99	0.00	0.00	7.31	3.86	13.47
14	I2	Intron	0	7.81	2.73	5.33	1.63	2.22	6.89	4.59	3.35	2.17	5.26	3.52	3.36	1.77	4.94	2.50	8.88	9.52	12.35	2.18	6.55	11.69	0.41	0.82	3.43	2.60	1.43	0.42	4.82	0.31
15	I2_AR1	ActiveIntronRegion	0	7.88	2.75	5.38	1.65	2.24	6.94	4.63	3.38	2.19	5.31	3.55	3.39	1.79	4.98	2.52	8.95	9.60	12.47	2.20	6.61	11.80	0.41	0.83	3.46	2.63	1.44	0.42	4.87	0.31
16	E3_Aa	NovelBoundary	0	36.28	30.25	19.41	19.84	50.70	21.37	37.42	19.01	23.11	22.49	39.35	36.20	21.46	22.87	0.00	40.01	40.11	38.40	40.46	23.57	34.94	8.95	36.35	18.06	20.80	17.72	11.68	30.55	9.44
17	ER3a	ExonRegion	1	17.29	8.04	21.20	2.69	47.78	17.33	11.27	9.81	13.19	21.58	17.57	22.87	6.80	8.39	13.56	18.05	16.15	36.52	10.66	14.94	27.91	10.48	9.71	5.41	8.88	18.32	25.98	38.61	3.64
18	E3_Da	NovelBoundary	0	5.31	0.00	6.25	0.00	5.89	1.61	2.92	2.24	1.64	3.95	7.72	3.04	1.94	2.24	0.00	0.00	4.68	14.64	0.00	0.00	7.94	0.00	0.00	0.00	3.18	0.00	0.00	5.93	1.62
19	E3a_E4a	KnownJunction	0	12.92	9.21	46.42	10.78	78.25	29.93	7.55	7.02	21.77	17.06	7.69	31.20	15.03	12.36	0.00	13.77	23.18	32.36	16.18	19.77	29.72	6.95	16.70	9.15	10.27	13.52	12.77	17.66	12.21
20	I3	Intron	0	5.08	3.16	1.97	1.47	3.01	3.60	1.58	0.72	1.55	3.23	1.98	2.37	0.65	2.10	0.98	3.60	2.84	6.68	1.25	1.92	5.81	0.39	0.46	1.12	1.13	0.60	0.63	2.05	0.47
21	I3_SR1	SilentIntronRegion	0	5.79	1.56	0.68	5.60	3.75	5.27	4.20	0.00	1.06	5.36	0.93	2.26	0.87	2.05	2.17	5.02	1.66	7.97	0.83	2.50	9.79	0.23	0.00	0.70	1.32	0.02	0.71	2.13	0.35
22	I3_AR1	ActiveIntronRegion	0	9.69	0.00	0.91	13.36	3.38	7.26	5.00	1.16	1.91	6.79	0.00	4.17	1.48	2.84	2.14	4.94	1.34	6.50	0.00	1.28	16.38	0.00	0.00	0.64	2.54	0.87	0.00	6.10	0.81
23	I3_SR2	SilentIntronRegion	0	9.32	4.56	1.24	8.81	5.59	0.67	0.74	1.01	0.78	3.12	2.26	0.43	0.00	1.22	0.00	0.21	2.86	12.87	0.00	0.00	5.53	0.00	0.00	0.00	0.55	0.16	0.67	1.23	0.00
24	I3_AR2	ActiveIntronRegion	0	10.93	7.24	2.36	3.16	10.26	7.36	6.01	3.17	3.67	4.35	2.52	4.07	0.68	3.34	1.93	5.00	4.37	13.55	3.50	2.17	8.43	1.32	0.99	2.16	2.37	0.99	2.12	3.21	0.98
25	I3_SR3	SilentIntronRegion	0	4.22	2.49	2.07	0.83	3.00	4.37	0.72	0.68	1.20	3.74	2.67	2.05	0.64	1.93	0.57	2.75	2.62	6.76	1.67	1.95	5.65	0.35	0.52	1.00	0.95	0.75	0.26	1.76	0.22
26	I3_AR3	ActiveIntronRegion	0	5.45	2.62	2.41	0.10	0.53	1.51	0.87	0.40	0.70	2.97	2.08	2.23	0.76	2.39	1.09	3.90	2.71	5.19	0.69	1.94	4.87	0.47	0.39	1.56	1.26	0.51	0.10	2.59	0.59
27	I3_SR4	SilentIntronRegion	0	3.11	4.86	1.99	0.39	1.83	1.35	0.74	0.11	1.78	1.34	0.91	2.70	0.40	1.59	0.58	3.57	2.86	4.83	0.00	0.69	4.07	0.00	0.23	0.81	0.63	0.20	1.49	1.20	0.67
28	I3_SR5	SilentIntronRegion	0	2.11	1.59	0.82	0.00	1.23	2.37	0.00	0.00	2.62	1.42	2.35	0.61	0.48	0.67	1.14	2.27	2.21	2.06	0.79	2.04	2.11	0.44	0.45	1.06	0.35	1.16	0.00	2.01	0.33
29	I3_SR6	SilentIntronRegion	0	4.26	1.23	2.22	1.59	0.00	2.13	0.89	0.41	2.61	0.96	0.00	2.46	0.72	3.01	1.22	6.60	5.30	3.84	0.71	5.16	4.73	0.00	0.80	0.48	1.27	0.70	0.41	1.81	0.89
30	E4_Aa	NovelBoundary	0	0.00	4.65	6.93	0.00	0.00	0.00	2.46	2.39	5.97	5.75	0.00	5.00	1.56	1.20	0.00	10.94	5.27	9.25	0.00	10.01	5.82	2.38	0.00	0.00	3.83	3.95	0.00	12.76	1.25
31	ER4a	ExonRegion	0	14.68	5.33	51.84	17.06	28.34	14.87	7.72	10.47	11.12	19.63	10.35	19.57	15.07	10.03	9.15	19.62	20.44	24.98	6.64	14.50	21.18	8.72	14.35	8.75	10.88	15.25	9.26	16.22	9.08
32	E4_Da	NovelBoundary	0	5.25	0.00	5.83	0.00	0.00	1.80	5.38	0.00	0.00	2.04	1.46	0.00	1.62	2.92	9.97	0.00	3.58	4.62	0.00	0.00	0.00	0.00	2.17	0.00	1.63	3.73	0.00	0.00	0.00
33	E4a_E5a	KnownJunction	0	16.93	8.63	57.53	29.12	31.98	12.35	7.72	16.47	12.58	5.11	12.84	32.68	31.37	23.84	28.90	35.80	27.82	37.76	8.09	7.77	18.73	22.27	29.80	19.92	22.88	16.26	7.60	18.38	14.29
34	I4	Intron	0	4.30	1.99	2.58	2.21	1.51	4.03	0.31	0.71	3.55	2.78	1.19	2.62	0.60	2.03	2.27	1.34	4.38	6.86	0.99	0.79	3.08	0.14	0.14	1.83	2.10	4.00	0.00	2.39	1.24
35	I4_SR1	SilentIntronRegion	0	4.33	2.00	2.60	2.23	1.52	4.06	0.31	0.72	3.57	2.81	1.20	2.64	0.60	2.04	2.29	1.35	4.41	6.91	0.99	0.80	3.10	0.14	0.14	1.84	2.11	4.03	0.00	2.41	1.25
36	E5_Aa	NovelBoundary	0	3.01	0.00	5.56	0.00	0.00	3.68	0.00	0.00	3.59	0.00	0.00	5.09	3.28	2.61	8.37	3.67	15.33	20.55	0.00	0.00	3.61	0.00	0.00	5.14	1.70	4.08	0.00	4.58	0.00
37	ER5a	ExonRegion	0	30.61	18.39	83.26	36.11	61.27	28.61	21.93	36.66	21.25	41.65	22.05	40.17	34.07	37.66	19.30	49.31	42.82	52.89	12.23	36.31	43.86	32.22	30.84	24.02	26.11	31.90	13.52	35.66	29.32
38	E5_Da	NovelBoundary	0	8.67	0.00	3.06	0.00	0.00	1.53	0.00	2.54	7.55	4.07	0.00	1.48	0.00	6.56	0.00	6.12	10.71	4.62	0.00	0.00	0.00	4.96	0.00	3.05	0.00	1.67	0.00	6.02	1.91
39	E5a_E6a	KnownJunction	0	18.34	21.52	63.53	31.92	44.80	30.77	27.06	48.72	20.52	37.47	18.70	45.45	35.86	43.54	18.34	44.98	35.59	55.48	0.00	44.66	46.89	39.91	22.06	36.01	19.70	24.42	29.92	44.17	33.21
40	I5	Intron	0	7.11	1.64	2.56	1.83	1.87	3.68	2.06	1.88	6.57	4.23	1.52	3.62	0.33	3.63	1.88	2.44	7.99	7.94	1.63	3.16	5.82	1.15	0.69	1.65	0.73	3.01	0.00	4.57	0.34
41	I5_SR1	SilentIntronRegion	0	7.14	1.65	2.57	1.84	1.88	3.70	2.07	1.89	6.61	4.25	1.53	3.64	0.33	3.65	1.89	2.45	8.03	7.98	1.64	3.18	5.85	1.16	0.70	1.65	0.73	3.02	0.00	4.60	0.34
42	E6_Aa	NovelBoundary	0	16.75	19.20	4.29	24.80	7.07	3.76	0.00	7.27	1.55	5.55	1.55	6.11	1.72	5.76	16.34	0.00	10.02	0.00	0.00	3.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
43	ER6a	ExonRegion	0	46.67	24.99	85.83	36.89	60.56	39.53	18.93	40.90	25.31	61.73	29.63	39.69	42.41	45.59	11.89	54.57	55.68	57.93	12.76	39.13	59.33	45.55	35.29	31.59	28.55	28.02	22.60	39.01	30.04
44	E6_Da	NovelBoundary	0	0.00	0.00	8.07	9.92	14.74	1.61	7.67	0.00	1.55	0.00	0.00	6.23	1.59	5.74	0.00	3.44	6.46	4.88	0.00	7.77	4.09	0.00	4.88	0.00	0.00	0.00	2.29	0.00	0.00
45	E6a_E7a	KnownJunction	1	39.23	47.41	85.48	59.53	39.64	28.47	21.06	34.59	20.46	71.78	21.83	39.70	33.56	46.97	8.37	75.73	56.72	64.73	8.09	52.35	56.76	32.87	39.65	40.14	40.16	25.19	30.76	56.21	24.63
46	I6_AR1	ActiveIntronRegion	0	1.81	0.40	1.04	0.89	0.00	1.69	0.00	0.92	0.97	2.56	0.74	1.30	0.16	0.88	0.00	1.49	1.49	1.68	0.40	2.37	1.78	0.22	0.00	0.54	0.71	0.97	0.00	1.22	0.17
47	E7_Aa	NovelBoundary	0	0.00	0.00	2.47	0.00	0.00	1.80	0.00	4.78	4.42	0.00	0.00	0.00	0.00	2.97	0.00	3.82	2.50	0.00	0.00	0.00	0.00	2.43	0.00	0.00	1.93	2.19	0.00	3.95	0.00
48	ER7a	ExonRegion	0	53.39	46.47	102.85	54.34	74.15	60.71	33.83	54.21	33.47	57.45	52.69	47.30	48.32	53.23	15.94	57.29	65.10	61.85	25.55	52.00	86.52	47.79	38.67	33.13	49.75	35.71	28.80	47.82	48.53
49	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.36	0.00	0.00	0.00	2.75	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85
50	E7a_E8a	KnownJunction	1	54.03	71.84	68.67	35.16	83.56	97.42	26.03	50.71	41.29	75.78	44.64	59.79	82.45	54.97	34.68	70.00	61.18	94.01	16.18	62.27	115.56	47.35	42.26	41.21	47.20	27.25	108.44	67.94	59.75
51	E7a_E9a	NovelJunction	0	3.01	0.00	2.24	0.00	7.07	5.52	7.04	2.19	5.85	14.34	6.14	2.92	1.62	2.08	0.00	14.38	4.68	4.62	0.00	8.27	14.40	2.48	0.00	6.10	4.96	0.00	25.79	0.00	0.00
52	I7	Intron	0	1.63	0.61	0.64	1.36	1.39	2.35	0.96	0.00	1.54	0.96	0.00	0.70	0.12	0.56	1.04	0.47	1.84	1.16	1.21	1.24	2.57	0.00	0.00	1.43	0.14	0.00	1.39	0.62	0.57
53	I7_SR1	SilentIntronRegion	0	1.66	0.62	0.65	1.39	1.42	2.39	0.98	0.00	1.57	0.98	0.00	0.72	0.13	0.57	1.06	0.48	1.88	1.15	1.24	1.26	2.62	0.00	0.00	1.46	0.14	0.00	1.42	0.63	0.58
54	E8_Aa	NovelBoundary	0	2.30	4.46	0.00	0.00	0.00	0.00	0.00	0.00	3.11	4.07	2.97	1.42	2.96	4.70	0.00	0.00	1.13	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER8a	ExonRegion	0	65.95	46.34	100.46	71.54	82.11	71.94	33.02	56.44	30.45	66.12	52.79	56.21	46.76	54.54	17.18	68.88	62.79	65.52	23.95	64.04	119.94	35.66	39.12	46.43	40.39	23.88	42.03	44.81	39.01
56	E8_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	E8a_E9a	KnownJunction	0	63.65	47.41	95.27	67.51	127.18	86.21	46.57	43.89	51.89	68.07	72.13	59.70	57.13	52.05	43.65	79.41	72.73	87.85	64.74	61.94	140.43	46.28	40.83	54.97	48.19	14.16	27.38	38.87	57.77
58	E9_Aa	NovelBoundary	0	2.24	4.85	1.12	0.00	0.00	3.53	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.77	0.00	0.00	0.00	1.70	0.00	0.00	0.00	0.00
59	ER9a	ExonRegion	0	55.37	41.65	92.01	65.81	73.84	61.02	40.63	53.64	49.92	61.99	50.21	55.90	59.98	46.74	48.22	61.34	62.48	55.37	25.01	57.29	98.53	34.21	31.16	57.91	39.17	31.96	46.97	47.60	46.72