Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NDUFS8	Gene	0	953.66	162.36	268.39	460.77	661.75	225.43	443.10	442.35	350.22	240.61	105.93	454.23	870.05	356.22	414.07	249.72	384.79	438.42	194.72	391.78	191.34	1070.16	780.95	323.51	379.25	481.95	158.46	970.13	474.47
2	313468	Transcript	0	1324.36	209.02	234.48	460.77	683.20	287.84	512.43	561.99	488.75	273.28	115.97	532.93	1065.55	474.34	505.00	257.85	420.54	516.20	229.57	578.31	275.26	1512.53	859.98	482.06	543.54	575.72	183.57	1177.87	567.49
3	432321	Transcript	0	12.04	2.33	3.55	9.04	2.53	5.19	2.98	5.01	3.06	3.56	1.90	5.82	1.04	7.53	8.05	5.52	24.67	10.82	6.85	0.72	1.72	1.03	0.78	5.36	3.50	7.30	0.00	2.17	1.28
4	IG3_AR2	ActiveIntergenicRegion	0	2.54	0.00	0.66	0.00	1.93	1.09	1.59	0.73	0.00	1.14	0.00	0.91	1.79	1.08	5.82	1.96	1.77	8.50	2.53	0.00	2.26	0.00	0.00	0.00	1.13	1.24	0.72	11.60	3.44
5	ER1a	ExonRegion	0	73.26	35.45	27.91	183.88	511.57	35.50	107.52	77.62	38.40	38.63	19.08	82.09	95.71	31.42	38.57	84.29	54.74	131.75	45.70	87.81	28.11	183.62	148.34	23.56	72.00	71.66	45.52	102.69	93.52
6	E1_Ab	KnownBoundary	0	193.35	66.12	78.93	386.74	1115.60	82.41	192.07	114.11	79.42	82.57	58.33	158.34	209.95	74.40	101.65	152.46	135.64	237.72	145.66	146.87	53.79	510.87	319.09	47.73	136.35	144.11	116.04	248.43	212.87
7	ER1b	ExonRegion	0	542.20	165.19	142.23	1264.28	1060.96	216.07	394.10	265.48	129.15	163.98	65.98	314.47	480.29	134.44	277.17	405.42	286.78	490.28	249.32	234.72	143.59	721.46	789.04	111.14	173.87	319.49	143.55	632.56	270.04
8	E1_Da	NovelBoundary	0	0.00	0.00	0.00	8.20	0.00	1.53	0.00	0.00	0.00	0.00	0.00	3.70	0.00	1.37	0.00	3.52	3.69	0.00	8.09	0.00	0.00	13.08	0.00	0.00	0.00	1.63	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	0	1123.61	213.00	342.28	1958.70	1546.96	385.82	705.86	526.72	322.61	346.37	91.36	502.82	714.65	215.89	502.48	744.72	540.81	536.20	209.73	296.72	283.30	1222.63	1387.56	208.76	298.12	533.98	211.26	1065.77	340.96
10	E1a_E3a	NovelJunction	0	0.00	0.00	1.20	34.08	0.00	0.00	0.00	2.49	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	8.09	0.00	1.72	1.99	1.92	3.05	0.00	0.00	0.00	0.00	0.00
11	E1a_E4a	NovelJunction	0	10.03	3.97	1.54	18.98	61.01	1.46	2.46	2.09	1.31	5.31	0.00	7.02	16.15	3.61	0.00	0.00	1.98	4.50	8.09	7.44	1.52	13.90	13.25	0.00	1.48	10.51	6.76	11.10	10.10
12	E1a_E6a	NovelJunction	0	10.91	0.00	2.54	0.00	45.10	0.00	5.49	0.00	0.00	2.04	0.00	4.34	5.03	0.00	17.14	2.91	2.75	0.00	0.00	12.32	0.00	10.40	0.00	3.05	0.00	0.00	9.54	7.46	1.32
13	E1a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I1	Intron	0	6.98	1.99	3.67	3.05	10.03	4.97	3.43	3.52	2.58	1.64	0.59	4.46	2.85	7.60	7.87	4.17	10.78	9.23	4.30	3.15	2.83	10.98	3.97	5.33	5.26	4.79	1.82	6.58	2.98
15	I1_AR1	ActiveIntronRegion	0	7.09	1.89	4.74	5.64	16.14	4.11	4.76	2.90	3.71	1.36	0.75	5.44	5.40	5.92	4.49	5.47	6.81	8.19	4.02	4.65	2.69	20.71	5.98	1.69	4.50	7.92	1.44	10.52	2.74
16	I1_SR2	SilentIntronRegion	0	6.95	2.09	2.82	0.93	5.07	5.71	2.35	4.06	1.68	1.87	0.46	3.68	0.76	9.04	10.72	3.13	14.13	10.17	4.56	1.95	2.96	3.04	2.34	8.36	5.94	2.24	2.14	3.38	3.21
17	E2_Aa	NovelBoundary	0	0.00	0.00	1.30	10.57	0.00	8.86	0.00	0.00	3.78	0.00	0.00	5.51	1.46	12.90	9.57	2.91	10.94	13.87	0.00	8.27	3.09	2.48	2.07	5.26	1.93	1.89	0.00	1.98	1.55
18	ER2a	ExonRegion	0	634.80	95.55	224.09	846.38	962.64	206.58	379.38	285.68	232.98	212.21	86.51	344.07	468.50	187.96	271.82	374.90	448.60	213.91	91.22	183.32	160.86	804.49	851.85	146.09	217.53	341.45	127.80	629.11	261.63
19	E2_Da	NovelBoundary	0	0.00	8.34	1.02	0.00	0.00	0.00	0.00	2.54	1.52	0.00	0.00	4.37	0.00	3.52	0.00	0.00	6.60	4.62	8.09	3.23	0.00	0.00	2.22	0.00	0.00	0.00	5.72	4.58	0.00
20	E2a_E3a	KnownJunction	1	148.70	21.23	104.32	145.59	170.36	50.91	64.02	117.80	91.54	45.74	15.53	132.95	164.67	87.85	126.37	63.34	170.55	103.77	40.46	94.03	30.32	263.21	123.32	56.53	56.34	91.49	43.93	248.97	122.91
21	I2	Intron	0	1.44	0.00	0.00	0.00	0.00	1.84	1.35	2.47	0.00	0.97	0.00	0.00	0.00	1.22	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00
22	I2_AR1	ActiveIntronRegion	0	1.48	0.00	0.00	0.00	0.00	1.88	1.39	2.54	0.00	1.00	0.00	0.00	0.00	1.25	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00
23	E3_Aa	NovelBoundary	0	11.09	0.00	1.07	0.00	5.60	5.29	0.00	2.54	1.43	0.00	0.00	0.00	0.00	4.81	0.00	0.00	5.76	0.00	8.09	0.00	1.85	4.52	2.02	2.63	1.82	0.00	0.00	0.00	2.51
24	ER3a	ExonRegion	0	293.28	56.62	72.01	132.77	106.66	65.42	125.93	247.72	91.12	50.22	33.63	146.03	211.79	113.01	146.16	69.62	140.95	149.30	56.17	204.46	54.45	476.59	143.60	135.99	118.38	114.79	34.98	225.26	113.32
25	E3_Da	NovelBoundary	0	17.40	3.78	1.32	0.00	6.19	7.37	2.46	2.49	3.17	2.04	1.27	5.06	2.83	12.12	9.97	3.37	16.43	13.87	0.00	4.13	3.69	14.24	0.00	7.60	5.80	0.00	0.00	5.53	1.45
26	E3a_E4a	KnownJunction	0	578.59	120.51	50.13	220.44	131.31	115.52	207.52	404.25	145.44	89.80	66.81	166.29	316.76	174.48	158.86	112.22	144.01	265.08	96.88	330.80	101.60	911.04	259.35	280.53	219.96	182.69	48.21	280.64	151.96
27	I3	Intron	0	43.20	3.67	7.06	8.74	9.62	9.79	5.86	9.67	4.05	6.50	2.23	9.42	2.36	22.31	21.35	11.83	28.97	17.31	14.68	13.19	4.95	4.73	2.71	12.10	5.90	4.42	2.06	9.93	3.02
28	I3_AR1	ActiveIntronRegion	0	43.36	3.68	7.08	8.77	9.65	9.83	5.88	9.70	4.06	6.52	2.24	9.46	2.37	22.39	21.43	11.88	29.08	17.37	14.73	13.23	4.97	4.75	2.72	12.15	5.92	4.44	2.07	9.97	3.03
29	E4_Aa	NovelBoundary	0	61.05	9.31	6.80	0.00	13.56	6.91	5.49	15.28	8.53	16.22	0.00	10.63	8.28	28.07	29.90	7.50	52.54	13.87	16.18	9.26	2.05	4.38	2.31	8.43	5.34	9.61	3.73	7.91	2.97
30	ER4a	ExonRegion	0	1483.74	266.66	98.69	252.21	356.57	371.10	573.91	770.35	453.49	368.02	145.34	504.28	947.33	464.10	612.02	438.55	397.26	639.69	322.04	567.57	301.46	1562.31	774.30	424.88	582.77	519.27	137.43	905.40	563.58
31	E4_Da	NovelBoundary	0	5.66	3.88	2.82	0.00	20.19	4.76	0.00	2.54	1.34	0.00	0.00	5.39	0.00	7.78	0.00	3.75	16.79	4.62	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
32	E4a_E5a	KnownJunction	0	1232.91	252.17	117.80	290.54	582.71	442.19	1052.01	553.00	555.70	666.25	233.59	782.27	1282.63	500.52	1058.19	816.85	674.27	832.48	347.98	470.97	378.04	1099.58	1405.98	442.99	634.65	768.12	217.23	1601.90	799.85
33	I4	Intron	0	5.58	0.00	0.87	3.73	0.00	1.43	3.15	0.96	1.75	0.75	0.00	0.64	0.00	2.12	4.80	1.29	0.78	2.01	0.00	0.00	0.00	0.00	0.00	3.36	0.74	0.82	0.00	1.71	2.10
34	I4_SR1	SilentIntronRegion	0	5.73	0.00	0.90	3.85	0.00	1.48	3.23	0.99	1.81	0.78	0.00	0.66	0.00	2.19	4.95	1.33	0.80	2.07	0.00	0.00	0.00	0.00	0.00	3.46	0.74	0.84	0.00	1.77	2.16
35	E5_Aa	NovelBoundary	0	10.20	0.00	1.07	0.00	0.00	1.73	0.00	0.00	0.00	0.00	0.00	4.04	0.00	5.96	0.00	0.00	20.60	4.62	0.00	0.00	3.41	2.04	0.00	0.00	7.69	8.15	0.00	2.02	1.52
36	ER5a	ExonRegion	0	1321.57	247.47	683.91	725.01	1435.66	261.13	553.12	633.95	357.68	378.47	179.42	666.70	1179.56	584.48	656.60	312.71	624.87	615.92	299.25	587.79	202.09	1281.69	1023.74	507.10	516.40	622.77	282.68	1433.27	624.45
37	E5_Da	KnownBoundary	0	4.95	0.00	4.29	10.78	7.37	9.17	0.00	6.97	0.00	7.11	1.61	5.90	0.00	7.44	24.91	7.04	29.60	9.25	0.00	0.00	5.98	2.43	0.00	3.05	1.67	4.33	0.00	2.11	3.24
38	E5a_E6a	KnownJunction	0	1084.27	208.25	470.74	782.10	1372.91	208.76	655.17	467.65	321.70	376.93	147.77	715.26	1161.75	574.76	574.24	292.68	645.14	511.41	315.16	483.87	178.49	1092.53	1018.24	508.73	512.51	618.99	295.95	1785.40	642.67
39	ER5b	ExonRegion	0	12.04	2.33	3.55	9.04	2.53	5.19	2.98	5.01	3.06	3.56	1.90	5.82	1.04	7.53	8.05	5.52	24.67	10.82	6.85	0.72	1.72	1.03	0.78	5.36	3.50	7.30	0.00	2.17	1.28
40	E5_Db	NovelBoundary	0	13.86	9.60	8.77	0.00	0.00	9.32	2.40	12.34	6.30	1.92	0.00	12.89	0.00	14.93	42.65	14.84	43.15	9.25	24.28	0.00	0.00	2.14	0.00	10.53	4.77	1.76	4.08	4.22	0.00
41	I5	Intron	0	8.86	3.56	5.25	4.13	4.34	5.83	5.06	10.50	5.84	5.14	2.30	6.00	1.63	11.84	12.51	8.12	28.34	10.23	4.68	3.24	3.28	2.36	1.14	10.46	6.95	1.97	1.05	7.85	3.01
42	I5_AR1	ActiveIntronRegion	0	9.77	3.13	6.24	4.16	4.05	6.27	5.85	13.74	6.56	6.11	3.45	7.77	1.94	13.32	12.51	9.50	31.69	11.10	5.03	3.54	4.02	3.29	1.05	11.06	5.10	2.35	1.67	7.71	3.72
43	I5_SR1	SilentIntronRegion	0	9.84	4.62	1.75	0.00	1.48	3.11	0.00	2.86	4.95	1.76	0.00	4.08	0.00	5.68	1.45	0.75	13.91	10.71	0.00	0.00	4.12	0.00	0.00	3.82	5.51	0.00	0.00	2.35	0.05
44	I5_AR3	ActiveIntronRegion	0	13.61	5.97	7.39	3.35	11.06	9.52	6.60	9.63	7.44	6.32	0.00	4.18	0.61	14.06	14.23	8.78	29.38	16.88	1.49	5.16	3.65	0.00	3.38	8.11	14.02	1.47	0.00	13.91	1.55
45	I5_AR4	ActiveIntronRegion	0	4.16	3.69	2.03	5.22	2.37	3.34	2.94	3.13	3.40	2.45	0.58	2.40	1.57	7.92	13.87	5.25	21.75	4.83	6.21	2.01	1.04	1.31	0.44	11.49	9.37	1.53	0.00	6.33	2.28
46	E6_Aa	NovelBoundary	0	0.00	0.00	5.88	8.84	7.37	3.07	4.98	14.08	2.68	0.00	0.00	5.57	9.90	4.87	26.71	10.33	38.31	0.00	0.00	0.00	4.05	2.38	0.00	5.56	5.80	8.58	0.00	18.29	6.77
47	ER6a	ExonRegion	0	1685.87	294.19	135.09	613.75	623.93	457.00	936.23	787.94	716.22	475.58	194.64	903.28	1885.31	683.21	745.06	404.43	618.19	849.91	343.23	718.70	406.24	1689.54	1611.89	576.77	768.73	1057.63	290.82	2079.29	994.57
48	E6_Da	NovelBoundary	0	11.33	0.00	0.00	0.00	0.00	3.72	4.63	0.00	2.38	3.60	0.00	2.74	1.88	0.00	0.00	0.00	3.11	0.00	0.00	0.00	0.00	7.20	1.97	2.69	1.78	0.00	0.00	0.00	1.68
49	E6a_E7a	KnownJunction	0	2528.77	350.57	98.84	297.01	269.54	490.99	356.45	1005.82	794.14	257.05	116.38	419.15	1013.48	666.36	713.56	298.50	331.56	627.38	258.73	1145.05	524.64	2938.04	573.81	868.76	916.44	508.62	116.89	689.74	467.34
50	I6_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.98	2.88	0.00	0.00	0.00	0.00	1.00	0.00	0.00	8.27	0.00	0.00	0.00	0.00	3.30	0.00	2.92	1.41	0.00	0.00	0.00	0.00	0.00	0.00
51	E7_Aa	NovelBoundary	0	2.89	0.00	0.00	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.36	1.37	19.93	2.91	6.46	4.50	0.00	0.00	3.53	2.09	0.00	8.13	3.49	0.00	0.00	0.00	1.55
52	ER7a	ExonRegion	0	1249.65	156.65	439.83	427.12	638.04	246.98	506.78	470.94	573.28	218.20	101.99	544.85	1171.52	415.94	453.59	209.34	453.07	460.57	185.05	456.11	238.80	1658.92	947.64	432.47	448.03	621.69	168.67	1232.21	639.33