Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AP001258.1	Gene	0	27.56	14.82	18.38	32.64	5.20	21.04	20.26	35.31	19.15	31.02	18.85	28.66	25.83	26.89	27.45	25.84	37.88	12.34	14.62	19.34	20.45	15.37	6.00	23.96	10.94	14.42	10.91	17.17	17.49
2	501817	Transcript	0	21.61	5.63	16.28	31.01	6.99	14.63	20.03	30.55	10.45	21.41	12.34	22.50	18.90	18.92	15.42	15.58	31.64	9.18	7.39	12.47	13.62	15.57	3.53	12.45	5.92	10.31	6.17	17.83	13.53
3	IG6	Intergenic	0	11.05	0.00	0.96	20.54	2.80	9.45	6.93	0.00	1.93	4.14	1.36	8.49	4.09	2.85	0.00	14.22	4.28	10.12	3.66	4.74	2.45	3.10	1.04	0.00	0.82	1.80	5.25	9.34	5.38
4	IG6_AR1	ActiveIntergenicRegion	0	11.31	0.00	0.97	21.01	2.86	9.67	7.09	0.00	1.98	4.23	1.40	8.67	4.18	2.92	0.00	14.52	4.38	10.35	3.75	4.85	2.49	3.17	1.06	0.00	0.84	1.84	5.37	9.56	5.51
5	ER1a	ExonRegion	0	15.23	2.59	16.27	42.79	8.83	8.60	11.32	22.28	8.78	6.11	4.43	23.89	18.84	8.87	5.28	11.94	35.52	9.04	5.78	1.71	7.85	11.26	3.27	0.78	1.08	10.25	4.03	3.92	6.69
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00
7	E1a_E2a	KnownJunction	0	15.87	9.50	3.24	17.90	0.00	3.15	11.16	17.92	5.54	9.43	4.14	8.55	13.44	9.48	0.00	10.33	23.97	4.62	0.00	0.00	1.60	27.23	0.00	6.10	3.86	0.00	0.00	4.09	5.65
8	E2_Aa	NovelBoundary	0	5.49	17.35	5.11	0.00	6.93	3.41	7.95	4.63	21.32	5.87	4.46	17.98	5.99	3.79	9.57	7.19	24.99	0.00	0.00	0.00	0.00	0.00	2.51	2.81	5.27	0.00	0.00	12.81	3.00
9	ER2a	ExonRegion	0	45.55	9.12	13.63	25.72	4.11	23.88	44.99	65.71	16.73	38.24	20.12	41.72	37.57	32.99	28.00	34.39	74.94	15.77	14.61	21.90	26.05	31.26	8.08	11.89	10.54	28.20	10.94	40.56	29.10
10	E2_Da	NovelBoundary	1	18.46	4.75	7.97	18.33	0.00	12.01	2.57	12.34	31.31	17.70	7.09	12.80	4.62	12.67	32.09	14.15	30.46	9.25	8.09	3.56	18.37	14.00	0.00	2.51	13.94	15.58	2.04	34.69	13.83
11	E2a_E3a	KnownJunction	0	39.34	0.00	42.95	83.90	25.35	25.40	34.44	46.58	10.02	32.40	20.91	37.35	28.34	32.06	16.34	23.64	40.13	18.75	0.00	37.63	23.67	25.18	2.51	22.01	11.48	12.32	10.73	46.41	14.66
12	I2	Intron	0	4.34	2.31	0.77	1.65	0.45	3.95	1.39	1.48	1.47	3.82	1.31	0.85	0.18	2.84	2.81	2.94	4.47	1.88	2.87	0.69	2.59	0.25	0.00	0.74	0.56	0.83	0.38	0.83	0.63
13	I2_AR1	ActiveIntronRegion	0	2.52	1.75	0.00	4.23	0.00	3.04	0.59	2.54	4.77	4.55	0.52	0.00	0.00	2.11	2.72	4.55	2.43	1.14	3.77	0.81	4.39	0.00	0.00	1.90	0.71	0.99	1.05	0.00	0.40
14	I2_SR1	SilentIntronRegion	0	4.50	2.36	0.84	1.43	0.49	4.03	1.46	1.39	1.19	3.76	1.38	0.92	0.19	2.90	2.82	2.80	4.64	1.95	2.79	0.68	2.44	0.27	0.00	0.64	0.55	0.82	0.32	0.90	0.65
15	E3_Aa	NovelBoundary	0	7.90	0.00	0.00	9.49	0.00	7.33	4.58	0.00	4.14	14.86	10.76	4.58	0.00	3.83	41.86	3.82	12.99	0.00	8.09	0.00	1.93	0.00	0.00	3.05	1.82	0.00	0.00	3.68	0.00
16	ER3a	ExonRegion	0	39.50	5.88	33.74	60.91	12.97	30.33	43.49	58.89	10.47	42.25	23.63	27.96	27.29	32.20	26.81	20.65	44.67	14.59	16.86	22.59	25.00	18.13	5.18	20.34	9.99	14.05	5.46	27.54	22.77
17	E3_Da	NovelBoundary	0	22.18	0.00	1.02	0.00	0.00	9.40	21.28	24.29	7.06	8.55	4.56	4.82	3.92	18.08	0.00	13.54	14.32	0.00	0.00	3.72	7.90	4.96	0.00	0.00	5.46	7.64	0.00	4.40	5.38
18	E3a_E4a	KnownJunction	0	8.14	0.00	16.99	8.63	6.04	14.69	18.71	25.48	10.69	25.21	14.17	26.66	15.32	17.77	16.34	6.35	23.41	5.39	8.09	4.13	11.95	12.11	1.87	11.90	1.86	12.45	5.07	18.11	21.36
19	I3	Intron	0	12.63	4.54	3.82	6.90	0.00	6.46	4.36	11.96	9.10	12.16	3.58	3.79	3.74	9.58	14.50	10.79	10.59	3.78	7.69	6.02	10.81	8.02	1.96	4.14	4.99	1.70	3.75	3.33	2.66
20	I3_AR1	ActiveIntronRegion	0	13.40	2.53	4.87	5.58	0.00	4.63	5.40	14.39	4.68	10.73	2.01	2.07	4.24	10.46	12.36	10.74	15.71	3.25	8.43	4.98	7.92	10.36	2.39	2.13	5.22	1.32	2.47	3.88	3.21
21	I3_SR1	SilentIntronRegion	0	12.37	5.47	3.38	7.54	0.00	7.32	3.93	10.95	11.16	12.88	4.31	4.59	3.54	9.25	15.57	10.89	8.36	4.05	7.40	6.53	12.19	7.03	1.78	5.07	4.92	1.88	4.34	3.11	2.43
22	E4_Aa	NovelBoundary	0	5.13	11.44	8.82	9.06	0.00	7.56	5.26	5.08	21.16	13.66	3.04	5.57	5.92	10.39	23.32	17.52	23.93	4.62	8.09	4.13	15.20	13.90	0.00	8.13	7.43	1.67	21.62	0.00	3.53
23	ER4a	ExonRegion	0	27.29	20.02	19.21	31.29	4.22	22.83	16.18	31.94	23.55	34.17	21.65	30.30	27.77	29.60	31.56	29.93	35.42	13.29	16.54	22.65	22.34	14.93	6.29	31.07	13.56	14.61	13.19	14.81	17.78
24	E4_Da	NovelBoundary	0	10.68	7.17	1.22	10.78	7.37	27.62	24.43	2.39	47.26	18.77	9.55	13.64	31.11	15.58	62.19	17.67	19.29	4.62	72.83	6.45	10.59	10.79	5.02	29.79	14.51	1.85	18.74	8.49	13.60
25	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	I4	Intron	0	3.13	5.08	0.54	16.30	1.59	12.06	7.20	3.29	15.66	11.96	6.77	10.81	6.40	6.83	26.61	8.35	14.06	2.50	12.45	5.37	11.82	3.22	0.88	16.42	4.18	3.06	6.54	3.18	5.97
27	I4_AR1	ActiveIntronRegion	0	4.11	7.07	0.70	21.02	1.36	15.84	9.32	4.63	21.45	16.11	8.82	14.60	8.94	9.38	35.31	10.77	19.32	2.74	16.68	7.56	16.22	4.54	1.24	22.03	5.87	4.26	8.69	4.43	8.17
28	E5_Aa	NovelBoundary	0	40.52	44.21	87.50	101.38	43.18	67.76	39.65	14.28	116.85	55.20	42.17	98.34	28.63	53.57	41.86	68.08	177.44	9.12	0.00	6.78	74.20	1.99	8.62	54.97	17.62	45.19	23.06	31.59	36.91
29	ER5a	ExonRegion	0	3.58	3.59	0.48	7.99	1.36	2.76	0.00	6.16	8.23	4.87	1.99	6.10	1.55	7.31	14.41	2.99	6.69	1.15	4.60	1.63	4.14	0.00	4.54	7.95	0.87	0.88	6.13	5.00	3.78
30	IG5	Intergenic	0	2.29	6.61	0.31	1.85	0.72	3.20	2.53	3.33	4.76	5.91	4.70	12.65	3.22	2.87	6.35	3.29	3.64	5.20	7.43	0.76	7.90	1.93	6.14	2.62	2.11	3.89	8.92	7.10	4.09
31	IG5_SR1	SilentIntergenicRegion	0	2.30	6.62	0.31	1.85	0.72	3.20	2.53	3.34	4.76	5.92	4.71	12.67	3.23	2.87	6.36	3.29	3.64	5.21	7.43	0.76	7.91	1.93	6.15	2.62	2.11	3.89	8.93	7.11	4.10