Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C11orf46	Gene	0	179.98	137.29	79.82	339.80	322.04	214.39	205.93	184.55	122.00	102.35	195.79	93.75	106.10	135.96	243.81	204.77	179.59	265.36	211.48	1001.40	139.15	142.69	152.48	173.67	143.90	65.98	169.00	119.24	203.49
2	282032	Transcript	0	259.49	144.17	133.48	426.42	363.23	173.25	184.00	262.95	105.48	107.66	177.76	110.17	145.30	163.14	229.86	213.57	191.15	346.94	225.37	998.86	127.69	200.16	208.41	154.89	171.66	103.46	155.59	147.70	262.86
3	IG21_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	2.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	4.62	1.22	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00
4	IG21_AR2	ActiveIntergenicRegion	0	4.29	0.00	0.00	7.70	8.39	0.41	0.00	1.52	0.49	0.00	0.00	0.65	0.00	0.00	8.25	0.00	0.00	8.57	2.86	2.47	1.98	4.78	3.24	0.00	7.72	5.05	6.55	1.46	4.31
5	ER1a	ExonRegion	0	259.41	87.05	167.92	1048.51	856.67	225.59	197.29	408.27	101.77	84.68	102.50	116.77	153.13	123.89	129.89	225.88	236.55	395.44	113.24	676.83	143.96	283.68	230.32	70.87	107.79	149.39	79.15	149.41	344.45
6	E1a_E2a	KnownJunction	0	80.28	20.26	90.57	304.56	205.73	41.28	36.96	75.79	26.46	27.92	32.81	34.91	72.51	51.58	48.83	35.80	85.45	56.25	40.46	508.35	34.09	51.10	78.31	16.45	68.50	31.24	73.40	24.89	135.92
7	E1a_E3a	NovelJunction	0	2.24	0.00	6.10	0.00	5.75	0.00	4.35	7.27	1.13	5.47	0.00	2.68	1.97	2.08	0.00	0.00	0.00	5.39	0.00	0.00	1.60	0.00	0.00	2.27	0.00	0.00	0.00	0.00	2.05
8	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
9	I1	Intron	0	3.04	3.49	0.75	0.46	2.81	4.24	0.36	0.61	0.76	1.66	0.67	1.90	0.41	1.88	1.31	2.34	3.42	10.77	2.82	11.16	2.44	0.25	0.39	0.66	0.73	0.40	0.07	0.83	0.56
10	I1_AR1	ActiveIntronRegion	0	3.17	2.55	1.39	0.00	4.07	2.68	0.00	0.85	0.78	0.00	0.00	0.34	0.00	1.03	0.00	0.63	3.01	6.00	1.33	5.64	0.79	1.25	0.50	1.20	0.79	0.87	0.00	0.68	0.84
11	I1_SR1	SilentIntronRegion	0	3.54	3.49	0.67	0.82	1.39	4.05	0.48	0.82	0.45	1.36	0.75	1.78	0.46	2.09	0.73	2.30	3.26	11.02	3.75	13.57	2.26	0.15	0.46	0.55	0.45	0.27	0.05	1.12	0.61
12	I1_AR2	ActiveIntronRegion	0	4.35	2.51	1.09	0.93	2.44	4.34	0.46	0.00	1.22	3.34	0.60	1.52	0.70	2.80	0.00	0.65	3.57	11.78	2.92	8.10	1.90	0.00	0.47	0.28	1.78	0.41	0.00	0.42	0.26
13	I1_SR2	SilentIntronRegion	0	2.25	2.62	0.04	0.00	8.06	4.58	0.00	0.50	1.11	2.83	0.32	1.68	0.53	1.49	0.36	2.45	2.48	7.93	1.66	7.61	2.03	0.00	0.24	0.00	0.90	0.00	0.00	0.16	0.36
14	I1_AR3	ActiveIntronRegion	0	1.98	4.81	1.01	0.00	3.05	5.33	0.00	0.84	1.03	2.44	0.55	1.80	0.00	1.69	5.74	4.33	4.91	5.38	0.98	12.66	5.48	0.00	0.97	0.65	0.44	1.21	0.28	1.66	0.21
15	I1_SR3	SilentIntronRegion	0	1.87	3.34	0.73	0.00	4.27	3.00	0.53	0.00	0.78	1.13	0.73	1.61	0.11	1.34	0.81	1.89	2.74	11.78	1.95	9.01	1.99	0.16	0.00	0.19	0.37	0.27	0.00	0.43	0.52
16	I1_SR4	SilentIntronRegion	0	2.28	5.12	0.25	0.00	3.72	7.74	0.31	0.84	1.36	2.64	1.26	5.43	1.18	1.99	4.35	5.18	4.77	18.76	3.40	12.23	3.91	0.55	0.00	2.29	1.74	0.24	0.28	0.25	0.91
17	E2_Aa	NovelBoundary	0	19.58	0.00	1.54	8.20	0.00	21.72	0.00	2.54	3.29	7.91	0.00	1.87	3.03	0.00	25.11	7.50	12.70	9.12	8.09	14.80	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	8.88
18	ER2a	ExonRegion	0	258.18	159.22	128.06	419.86	345.67	223.58	185.60	245.25	109.28	130.36	204.51	109.56	142.18	170.55	223.77	229.72	213.80	367.30	243.97	1226.80	162.69	204.65	196.73	175.65	221.56	105.27	169.92	148.44	309.20
19	E2_Da	NovelBoundary	0	23.71	13.77	4.06	0.00	14.44	14.66	2.92	6.02	3.78	12.38	11.23	3.28	5.10	10.90	0.00	22.11	14.41	33.91	48.55	37.88	22.10	4.47	0.00	3.05	0.00	5.97	6.26	0.00	10.53
20	E2a_E3a	KnownJunction	0	369.01	187.31	243.47	315.13	299.31	153.16	200.82	291.78	134.08	139.61	224.99	143.40	170.43	239.98	336.25	259.94	191.67	497.92	436.32	1279.85	132.08	240.22	276.88	244.71	259.40	115.52	231.19	201.92	271.57
21	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	2.51	0.00	0.00	0.00	0.00	0.00	0.00
22	I2	Intron	0	6.52	8.29	1.46	4.76	5.12	10.24	2.68	1.93	4.78	4.84	3.45	3.13	2.87	4.77	6.55	7.27	7.83	24.52	11.84	17.35	5.93	1.39	2.09	4.96	2.60	1.81	2.62	1.48	2.73
23	I2_AR1	ActiveIntronRegion	0	4.76	12.65	0.79	0.00	0.00	4.73	2.76	0.00	1.54	1.82	0.31	0.00	0.24	0.17	0.00	4.12	3.97	19.10	6.87	19.88	3.01	0.00	0.00	2.71	2.86	4.19	0.81	1.93	0.99
24	I2_SR1	SilentIntronRegion	0	11.08	19.61	3.86	9.20	9.31	23.61	3.09	3.23	12.26	7.39	8.48	4.47	5.59	11.17	10.71	16.45	14.92	43.23	32.16	37.61	11.86	3.50	6.20	10.57	6.79	4.69	8.44	2.97	5.80
25	I2_AR2	ActiveIntronRegion	0	10.34	16.71	4.57	4.39	9.71	8.85	6.02	8.24	8.19	4.89	8.66	2.52	4.56	9.68	9.94	11.42	5.99	31.86	18.50	19.11	7.86	7.93	6.49	11.94	3.95	4.01	0.05	2.06	1.71
26	I2_SR2	SilentIntronRegion	0	1.72	4.14	0.72	2.99	1.96	3.31	0.03	1.51	1.11	1.81	0.00	0.57	0.78	0.19	1.23	3.99	2.36	12.66	1.28	8.85	2.47	0.00	0.00	1.73	1.15	0.00	0.00	0.01	2.28
27	I2_AR3	ActiveIntronRegion	0	2.27	3.43	0.00	4.63	10.26	5.91	0.88	0.00	0.61	2.25	1.04	1.78	1.55	1.13	5.70	4.59	0.64	17.24	7.27	19.39	1.67	0.00	0.12	1.88	0.27	0.00	1.60	0.00	0.48
28	I2_AR4	ActiveIntronRegion	0	5.93	3.94	0.57	3.70	2.98	7.09	3.05	1.27	2.65	4.73	2.04	3.40	2.30	3.11	5.96	4.46	7.56	20.02	5.49	10.63	4.91	0.37	0.72	3.25	1.43	0.97	1.07	1.34	2.19
29	I2_SR3	SilentIntronRegion	0	3.05	7.15	0.00	0.00	1.55	4.70	0.00	0.00	4.27	6.13	0.00	2.97	1.15	3.67	2.12	0.00	2.32	10.61	6.34	0.00	0.48	0.00	0.00	0.00	0.00	0.00	3.17	0.00	0.00
30	E3_Aa	NovelBoundary	0	3.01	0.00	1.15	0.00	0.00	1.96	0.00	4.58	1.43	0.00	0.00	2.74	8.18	0.00	0.00	9.49	7.65	23.89	8.09	9.68	1.80	0.00	0.00	2.51	0.00	0.00	0.00	0.00	2.05
31	ER3a	ExonRegion	0	339.86	179.39	156.16	286.91	287.14	190.15	224.27	332.08	108.97	128.45	260.00	123.41	186.18	211.48	292.37	247.42	224.60	415.05	292.16	1227.41	142.59	289.27	270.36	207.27	241.65	109.33	204.86	199.17	299.28
32	E3_Da	NovelBoundary	0	2.24	0.00	2.32	10.14	0.00	1.96	4.58	1.99	1.61	0.00	0.00	1.66	0.00	1.02	0.00	0.00	2.34	13.87	8.09	3.97	1.76	0.00	0.00	2.63	3.18	0.00	0.00	0.00	0.00
33	E3a_E4a	KnownJunction	0	369.72	245.58	93.56	330.01	260.70	166.09	232.06	344.98	129.88	149.52	226.00	157.65	206.10	223.89	325.49	303.32	223.20	480.33	250.19	1137.03	146.72	227.19	280.43	192.96	187.30	167.19	159.53	207.31	322.74
34	I3	Intron	0	1.22	4.48	0.17	0.00	1.51	3.55	0.62	0.19	1.59	1.19	0.98	0.29	0.40	2.03	3.32	4.06	2.85	8.72	3.46	3.11	1.69	0.28	0.47	1.44	0.74	0.24	0.00	0.08	1.03
35	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.98	0.00	0.00	1.93	0.00	0.00	0.00	0.00	0.78	0.00	0.00	0.57	0.00	2.59	0.00	0.00	0.00	1.55	0.00	1.23	0.00	0.00	0.00	0.00
36	I3_SR1	SilentIntronRegion	0	1.30	4.62	0.18	0.00	1.62	3.67	0.67	0.11	1.69	1.27	0.95	0.31	0.43	2.17	3.55	3.69	3.04	8.82	3.33	3.32	1.81	0.30	0.49	1.54	0.70	0.26	0.00	0.09	1.10
37	I3_AR2	ActiveIntronRegion	0	0.00	2.68	0.00	0.00	0.00	1.96	0.00	1.53	0.00	0.00	1.63	0.00	0.00	0.00	0.00	11.20	0.00	8.39	6.03	0.00	0.00	0.00	0.00	0.00	1.32	0.00	0.00	0.00	0.00
38	E4_Aa	NovelBoundary	0	3.01	4.85	0.00	0.00	0.00	9.55	2.52	7.37	0.00	1.80	5.06	1.87	0.00	6.54	7.77	12.55	14.18	32.36	8.09	3.47	0.00	2.48	0.00	3.05	3.86	16.69	5.07	4.58	5.05
39	ER4a	ExonRegion	0	140.00	130.41	54.66	279.98	287.40	212.92	211.00	142.50	127.91	93.06	193.54	85.47	86.57	120.59	252.44	192.90	162.77	216.28	201.22	935.75	131.66	105.04	125.86	176.32	115.44	46.29	171.06	102.72	156.85
40	IG22_SR1	SilentIntergenicRegion	0	2.77	2.59	1.02	4.98	5.08	5.52	2.33	2.44	4.41	2.75	5.97	1.16	0.72	1.53	9.32	6.63	3.02	7.74	6.70	27.12	2.20	0.47	3.14	7.08	2.56	1.66	5.52	2.53	4.10
41	IG22_AR1	ActiveIntergenicRegion	0	1.57	5.66	0.40	0.57	2.72	3.39	2.04	1.29	4.74	1.04	2.79	1.20	0.79	1.37	8.24	6.38	4.39	1.86	8.15	17.68	2.30	0.72	0.87	5.36	0.15	0.73	3.27	0.80	2.91