Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BLOC1S2	Gene	0	228.43	367.61	151.69	169.24	101.35	336.61	416.61	121.19	274.75	215.13	368.93	202.03	248.52	215.41	579.95	347.15	123.28	202.08	337.45	471.10	196.57	251.37	146.35	209.45	252.12	134.61	284.30	73.31	195.46
2	370376	Transcript	0	1.88	0.00	0.84	4.57	0.00	2.41	10.58	3.91	0.98	1.08	1.04	0.00	0.00	0.45	0.00	7.28	0.13	10.92	0.00	0.00	1.07	3.15	6.55	0.00	2.50	2.75	1.60	0.00	2.35
3	358848	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	370372	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	361832	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	441611	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	1.88	0.00	0.84	4.57	0.00	2.41	10.58	3.91	0.98	1.08	1.04	0.00	0.00	0.45	0.00	7.28	0.13	10.92	0.00	0.00	1.07	3.15	6.55	0.00	2.50	2.75	1.60	0.00	2.35
8	ER1b	ExonRegion	0	7.50	1.64	3.93	29.25	9.96	19.93	23.18	8.28	3.37	5.05	2.98	3.09	1.95	3.17	0.00	25.31	1.00	30.02	9.05	2.81	12.84	15.32	16.27	2.15	4.29	8.64	5.49	0.00	7.38
9	ER1c	ExonRegion	0	172.48	141.56	288.06	512.47	235.73	177.96	314.19	178.56	71.64	77.33	104.62	104.61	150.25	89.56	317.82	451.28	59.33	327.61	191.29	301.64	106.37	300.19	136.56	38.81	81.36	163.58	100.00	56.12	134.81
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.00	0.93	8.17	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.06	0.00	0.00	0.00
11	E1a_E2b	KnownJunction	1	217.77	169.37	778.04	422.97	242.72	147.79	356.56	147.71	121.35	97.07	214.45	204.30	244.12	173.46	558.69	257.42	136.52	294.11	266.83	367.02	95.82	333.86	112.63	73.39	205.64	252.29	240.29	123.92	274.84
12	I1_AR1	ActiveIntronRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	1.24	0.00	0.91	5.60	2.53	1.17	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	3.14	0.00	0.00	1.34
13	I1_SR2	SilentIntronRegion	0	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.34	0.00	0.49	0.09	0.55	0.18	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	1.16	0.00	0.00	0.70
14	E2_Aa	NovelBoundary	0	4.66	0.00	2.07	0.00	5.60	1.53	4.69	0.00	1.52	1.60	0.00	0.00	0.00	1.13	0.00	0.00	0.00	9.25	0.00	0.00	1.93	6.61	2.51	0.00	0.00	3.78	0.00	1.71	0.00
15	ER2a	ExonRegion	0	9.85	5.23	10.25	2.93	4.02	6.56	12.96	7.40	5.08	2.36	3.09	11.68	3.42	8.17	5.18	7.73	4.21	7.89	7.12	7.79	2.17	25.20	5.33	4.50	3.16	12.61	5.39	3.02	5.66
16	E2_Ab	KnownBoundary	0	16.28	8.24	1.15	0.00	7.37	1.65	4.63	11.50	0.00	4.99	2.91	4.82	1.46	5.76	0.00	7.04	0.86	4.62	0.00	12.32	3.69	24.31	0.00	4.73	5.23	2.15	0.00	0.00	1.52
17	ER2b	ExonRegion	0	211.19	130.52	343.94	148.08	87.86	153.32	239.86	146.14	121.36	99.27	129.09	129.21	175.31	149.54	274.72	139.76	87.86	120.74	106.04	304.81	81.11	309.73	80.89	93.61	143.11	142.72	132.71	62.91	172.09
18	E2_Da	NovelBoundary	0	5.90	9.21	0.00	0.00	0.00	1.76	0.00	2.34	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	3.89	0.00	0.00	0.00	0.00	0.00	8.54	0.00	0.00	0.00
19	E2a_E3a	KnownJunction	0	578.59	253.23	76.76	109.57	104.93	417.44	328.13	487.36	358.46	209.19	200.47	205.06	319.40	291.14	562.48	347.15	114.53	218.85	121.39	911.68	181.82	770.15	131.55	233.16	298.00	231.56	199.88	68.79	257.44
20	E3_Aa	NovelBoundary	0	2.95	12.12	0.00	0.00	0.00	0.00	0.00	0.00	4.39	3.91	0.00	0.00	0.00	3.15	0.00	14.61	1.87	9.25	0.00	4.13	3.57	0.00	0.00	0.00	1.67	1.72	0.00	0.00	3.60
21	ER3a	ExonRegion	0	574.54	612.61	158.62	178.79	93.57	624.00	877.83	398.30	425.07	492.99	806.66	443.40	552.38	425.72	1163.99	891.51	238.64	566.46	671.60	1045.15	376.79	666.16	389.63	351.28	650.17	588.84	585.43	220.14	585.31
22	E3_Da	NovelBoundary	0	0.00	9.70	1.10	0.00	0.00	15.65	0.00	0.00	1.55	1.56	0.00	4.16	0.00	2.17	0.00	14.23	1.40	0.00	8.09	0.00	2.05	0.00	1.92	0.00	0.00	0.00	0.00	0.00	1.55
23	E3a_E4a	KnownJunction	1	465.99	632.02	430.45	282.56	184.66	433.48	560.42	277.44	320.76	338.14	604.44	349.48	363.79	425.05	763.99	480.11	246.52	382.59	566.47	771.17	255.50	710.49	306.73	443.17	528.65	190.58	698.45	180.09	284.02
24	I3	Intron	0	5.12	3.90	1.94	0.00	0.35	6.36	1.02	1.07	2.44	3.24	1.89	2.05	0.61	3.73	4.86	7.52	3.13	7.01	4.16	2.59	5.37	1.30	1.57	2.18	1.55	0.57	0.00	1.65	0.87
25	I3_SR1	SilentIntronRegion	0	5.18	3.99	1.98	0.00	0.36	6.50	1.05	1.09	2.50	3.32	1.94	2.07	0.62	3.79	4.98	7.70	3.20	7.13	4.26	2.66	5.35	1.34	1.61	2.23	1.59	0.55	0.00	1.69	0.89
26	E4_Aa	NovelBoundary	0	0.00	0.00	1.00	0.00	0.00	3.61	0.00	0.00	2.68	3.79	0.00	1.42	0.00	3.30	0.00	3.82	1.40	4.62	8.09	0.00	3.65	0.00	0.00	3.05	0.00	6.57	0.00	1.84	1.55
27	I3_AR1	ActiveIntronRegion	0	3.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	0.00	0.00	1.24	0.00	1.27	0.00	0.00	0.47	2.55	0.00	0.00	6.85	0.00	0.00	0.00	0.00	1.57	0.00	0.00	0.00
28	ER4a	ExonRegion	0	508.86	601.42	963.75	414.66	356.82	465.54	603.38	318.54	348.32	381.33	547.37	329.32	414.11	402.26	839.40	521.76	220.06	341.82	444.78	891.60	243.31	563.69	315.89	373.64	539.65	266.40	452.42	147.42	345.31
29	E4_Da	NovelBoundary	0	5.43	12.80	4.53	0.00	0.00	10.51	2.80	2.54	3.11	3.20	0.00	1.36	1.24	5.92	8.37	13.62	9.12	4.62	8.09	0.00	1.64	4.18	2.07	5.92	10.42	0.00	0.00	0.00	1.88
30	E4a_E5a	KnownJunction	0	584.25	722.18	638.59	583.45	265.56	468.70	632.57	243.50	477.34	471.00	694.09	399.12	493.43	473.22	1065.56	698.82	209.29	340.98	566.25	1006.86	251.97	502.02	337.61	448.80	587.71	196.42	517.30	149.35	438.22
31	I4	Intron	0	2.71	13.13	2.04	0.32	0.44	5.90	2.01	1.08	6.87	4.77	4.36	4.71	0.88	4.48	10.07	12.28	9.25	8.45	4.91	3.06	4.77	1.63	0.49	4.67	3.88	2.06	0.66	0.96	1.60
32	I4_AR1	ActiveIntronRegion	0	5.88	20.51	3.56	1.52	3.04	11.95	6.27	0.00	3.88	5.79	5.37	2.08	0.00	4.18	9.15	12.81	2.05	6.96	5.13	13.27	7.50	0.00	1.46	4.01	1.32	3.49	1.14	0.00	1.64
33	I4_SR1	SilentIntronRegion	0	2.47	12.58	1.93	0.23	0.24	5.44	1.67	1.17	7.12	4.69	4.29	4.93	0.95	4.51	10.16	12.27	9.83	8.58	4.90	2.27	4.57	1.76	0.42	4.73	4.09	1.95	0.63	1.04	1.60
34	E5_Aa	NovelBoundary	0	2.83	14.54	2.79	0.00	5.60	5.60	0.00	0.00	10.23	5.75	3.10	9.10	0.00	6.07	15.15	15.22	9.66	9.25	16.18	4.13	8.22	1.94	2.51	0.00	3.11	0.00	0.00	0.00	0.00
35	ER5a	ExonRegion	0	409.30	775.58	163.20	302.72	167.66	704.04	847.72	180.81	599.83	374.33	740.47	389.30	488.80	410.03	1197.83	651.56	236.75	358.72	708.85	917.93	409.05	413.01	234.11	430.64	467.71	186.93	576.56	118.55	340.77
36	E5_Da	KnownBoundary	0	159.73	361.82	29.13	202.97	170.80	299.73	424.48	58.23	369.63	167.13	303.69	107.80	137.38	152.35	806.65	278.53	80.11	133.82	307.06	332.86	174.56	165.49	80.38	221.14	232.16	113.08	206.54	45.70	117.03
37	ER5b	ExonRegion	0	58.46	114.97	19.21	41.00	62.19	102.18	96.82	18.30	104.52	99.88	142.78	57.27	58.38	78.14	268.83	117.18	39.13	62.77	119.87	131.34	69.20	51.24	52.71	93.54	96.80	50.67	88.30	23.46	48.48
38	E5_Db	KnownBoundary	0	0.00	35.58	7.80	0.00	12.67	29.77	10.36	4.98	16.14	59.36	57.04	16.69	1.97	35.23	8.37	50.64	15.19	9.25	8.09	27.37	26.63	4.33	31.47	27.75	15.95	8.75	46.47	11.41	14.23
39	ER5c	ExonRegion	0	6.80	19.25	14.93	3.46	8.25	15.35	5.39	5.11	11.82	63.34	38.71	18.51	8.01	25.78	16.82	21.81	14.00	7.59	13.20	10.73	14.15	14.62	36.77	17.54	16.77	13.14	18.38	12.44	16.47