Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CCNJ	Gene	0	15.29	51.12	18.63	15.16	18.91	39.30	11.77	21.46	25.19	33.86	32.33	37.72	25.27	16.83	26.20	18.80	20.42	41.55	55.85	17.04	63.10	7.74	17.83	28.04	16.77	12.77	41.21	8.80	27.58
2	265992	Transcript	0	1.18	0.00	2.14	0.00	0.00	4.53	0.00	0.00	0.00	0.82	0.00	0.00	2.42	0.53	4.19	1.38	1.78	0.00	8.09	0.00	7.26	0.00	0.00	0.00	1.69	0.99	3.28	0.00	0.00
3	403870	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	419934	Transcript	0	24.46	76.08	49.00	7.76	19.38	59.81	11.56	31.42	21.28	57.93	67.99	68.08	20.23	29.69	21.80	24.31	27.62	57.27	119.74	26.25	69.07	14.43	38.57	35.03	20.74	25.78	58.55	22.33	35.31
5	465148	Transcript	0	2.12	14.15	14.75	0.00	21.81	12.74	4.23	1.79	6.70	5.83	3.51	0.00	15.32	1.64	0.00	2.83	0.00	0.00	0.00	0.00	2.97	0.00	3.64	17.59	1.40	1.50	25.74	3.28	0.00
6	471424	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1b	ExonRegion	0	0.28	1.13	4.34	2.02	0.52	0.97	1.70	0.54	0.00	1.20	0.32	1.31	0.64	0.43	0.25	0.70	1.06	4.98	0.90	0.00	1.22	0.49	0.52	1.46	0.73	3.22	0.56	0.14	0.99
9	E1_Ac	KnownBoundary	0	5.78	4.07	16.14	0.00	13.56	1.73	0.00	7.12	0.00	5.59	3.23	9.46	6.05	5.21	0.00	6.43	9.41	33.65	0.00	0.00	11.15	6.37	6.89	5.56	3.41	9.70	6.76	2.07	6.77
10	ER1c	ExonRegion	0	3.64	0.92	12.86	2.69	6.63	5.59	1.29	4.85	1.18	4.72	1.37	4.11	2.80	2.52	3.13	6.22	6.48	11.54	3.59	2.71	5.45	2.77	3.28	2.50	1.46	6.40	2.01	4.21	11.40
11	E1_Da	NovelBoundary	0	0.00	0.00	1.40	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	2.98	0.00	3.04	0.00	0.00	2.52	4.62	0.00	3.39	0.00	0.00	4.04	0.00	1.70	0.00	0.00	0.00	0.00
12	E1a_E2a	KnownJunction	0	5.66	0.00	2.39	0.00	0.00	6.91	7.38	0.00	2.95	13.66	0.00	2.71	0.00	2.02	0.00	0.00	8.80	9.25	0.00	10.59	4.53	0.00	6.50	3.05	3.26	5.66	0.00	8.31	1.29
13	Ix_SR1	SilentIntronRegion	0	1.19	0.73	1.56	0.00	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.41	0.66	2.49	0.00	1.24	2.78	0.00	0.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.17
14	Ix_AR1	ActiveIntronRegion	0	0.84	0.79	3.70	0.63	0.00	0.85	0.18	0.49	0.57	1.28	0.42	1.09	0.93	1.30	1.07	1.32	1.33	2.49	2.26	3.36	2.14	1.27	1.92	1.33	0.51	1.25	2.27	0.72	1.49
15	E2_Aa	NovelBoundary	0	0.00	0.00	2.96	0.00	0.00	1.80	4.35	0.00	0.00	1.68	0.00	1.54	0.00	1.09	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	2.36	5.32	0.00	2.10	0.00	0.00	2.77
16	ER2a	ExonRegion	0	10.33	5.26	6.70	0.80	6.43	13.11	6.38	13.76	3.34	9.37	5.55	10.67	3.12	7.92	3.26	12.81	8.77	29.80	10.90	12.26	15.82	8.44	10.73	4.48	9.20	12.73	1.33	8.11	10.88
17	E2_Da	NovelBoundary	0	0.00	0.00	4.63	0.00	0.00	0.00	0.00	2.39	0.00	8.79	0.00	4.46	0.00	0.00	0.00	3.37	3.51	4.62	0.00	0.00	1.56	4.67	0.00	0.00	0.00	4.16	13.62	0.00	8.55
18	E2a_E3a	KnownJunction	1	15.16	16.77	12.93	9.27	5.75	16.31	4.92	10.90	2.83	15.06	11.64	15.27	6.59	15.38	8.37	14.99	11.34	27.74	32.37	10.59	22.50	11.08	16.60	0.00	17.81	21.07	13.62	23.63	15.48
19	E2a_E4a	NovelJunction	0	3.01	9.70	0.00	0.00	0.00	11.74	0.00	0.00	0.00	12.18	4.71	0.00	3.15	0.00	8.37	3.82	3.78	18.49	8.09	0.00	5.50	2.48	0.00	0.00	5.38	1.59	5.76	0.00	6.87
20	Ix_AR1	ActiveIntronRegion	0	1.42	0.00	1.81	0.00	3.23	2.54	0.00	0.77	0.63	1.33	0.00	1.93	0.00	1.74	0.00	1.64	0.00	2.23	2.82	0.00	2.69	1.45	1.53	0.25	0.95	4.37	1.71	0.87	0.00
21	E3_Aa	NovelBoundary	0	2.48	0.00	0.00	21.57	7.37	7.71	0.00	4.38	7.37	0.00	0.00	1.42	0.00	4.34	0.00	2.98	4.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.14	3.95	0.00
22	ER3a	ExonRegion	0	30.92	24.22	26.32	11.71	14.12	41.69	12.28	35.88	11.60	29.28	33.52	28.52	13.73	25.00	9.37	17.61	17.06	27.87	24.95	18.81	53.99	13.58	21.10	12.82	17.00	19.48	20.27	18.15	22.77
23	E3_Da	NovelBoundary	0	0.00	3.59	0.00	0.00	0.00	5.14	0.00	2.19	3.17	0.00	0.00	0.00	3.69	1.13	0.00	25.02	1.40	9.25	0.00	0.00	3.41	0.00	0.00	2.45	0.00	0.00	0.00	0.00	0.00
24	E3a_E4a	KnownJunction	0	46.30	31.31	18.49	0.00	19.90	89.43	13.22	46.83	10.32	36.35	26.64	30.12	19.14	33.35	8.37	20.43	14.86	32.36	56.65	22.58	83.87	17.79	19.60	22.37	11.90	12.53	12.92	0.00	23.87
25	Ix	Intron	0	3.05	4.84	0.94	2.63	1.95	5.44	1.35	1.45	3.57	3.43	2.08	2.30	0.66	2.64	3.12	3.60	3.64	4.27	6.58	2.03	4.56	0.54	0.41	1.02	1.26	0.71	1.72	0.77	1.02
26	Ix_SR1	SilentIntronRegion	0	2.63	3.74	0.74	0.85	1.62	4.11	1.05	1.45	1.78	3.00	1.73	2.36	0.54	2.53	1.84	2.26	3.63	3.09	4.00	2.23	4.16	0.53	0.34	0.40	1.60	0.61	1.26	0.50	0.88
27	Ix_AR1	ActiveIntronRegion	0	4.34	1.52	0.28	6.60	0.64	5.62	0.26	0.59	2.15	3.14	2.58	1.60	0.64	1.20	2.54	2.71	2.35	5.09	6.91	1.07	5.31	0.36	0.71	1.21	0.89	0.53	2.17	0.00	0.00
28	Ix_SR2	SilentIntronRegion	0	1.09	2.62	0.05	8.97	0.00	5.21	1.89	0.14	0.70	4.89	1.46	3.74	2.61	1.59	0.00	3.76	2.45	4.92	11.55	1.53	6.07	0.00	0.00	0.51	0.00	0.00	4.58	0.00	0.49
29	Ix_AR2	ActiveIntronRegion	0	2.09	4.83	1.06	3.54	1.72	7.66	1.87	1.44	5.18	4.03	1.47	2.09	0.94	3.64	4.02	5.50	3.78	4.68	11.08	2.39	3.95	1.15	0.51	2.13	0.89	0.82	1.94	0.46	1.12
30	Ix_SR3	SilentIntronRegion	0	3.94	5.85	1.19	5.68	4.80	15.12	1.65	3.38	6.15	4.15	3.53	3.12	0.91	3.66	6.41	6.40	4.80	7.52	13.88	1.72	3.79	0.67	0.96	1.71	1.21	0.83	0.48	1.63	0.19
31	Ix_AR3	ActiveIntronRegion	0	6.90	10.77	2.42	0.00	8.47	9.07	2.62	2.95	5.71	3.35	6.69	3.54	2.08	3.83	14.45	7.49	5.75	7.21	16.56	0.00	10.01	1.08	1.88	1.03	1.54	0.94	0.00	1.50	0.62
32	Ix_AR4	ActiveIntronRegion	0	4.58	3.55	1.52	0.00	2.83	10.14	5.67	2.89	6.95	2.85	4.73	2.11	0.63	1.91	8.48	0.00	5.09	4.35	7.83	1.60	11.57	0.44	2.05	3.84	3.36	1.91	1.24	2.95	0.00
33	Ix_AR5	ActiveIntronRegion	0	3.78	11.08	1.20	4.54	2.71	5.84	1.62	1.75	8.30	3.25	2.74	1.95	0.21	3.02	3.93	5.11	4.38	5.12	5.89	2.08	6.19	0.39	0.29	0.86	1.25	0.99	1.95	1.39	1.85
34	Ix_SR4	SilentIntronRegion	0	4.57	3.65	2.14	0.00	2.78	1.95	1.72	1.05	3.42	4.51	2.20	2.45	0.46	1.99	5.62	4.48	2.97	5.75	6.35	1.80	2.63	0.00	0.00	2.14	0.81	0.89	2.84	2.32	2.18
35	E4_Aa	NovelBoundary	0	0.00	8.53	0.00	0.00	0.00	7.10	0.00	4.73	2.50	12.50	1.61	6.45	0.00	2.84	0.00	8.80	7.95	4.62	24.28	2.98	0.00	0.00	1.97	0.00	3.75	2.10	23.71	0.00	0.00
36	ER4a	ExonRegion	0	38.00	31.85	24.73	14.77	22.24	59.75	22.30	45.41	9.67	35.55	60.85	44.89	20.23	29.75	26.98	29.96	23.21	43.31	39.13	21.66	71.03	14.42	29.04	24.68	24.23	15.08	33.37	14.60	35.33
37	E4_Ab	KnownBoundary	0	26.96	48.86	18.41	0.00	21.66	78.85	17.74	29.81	12.00	30.24	94.94	50.42	20.06	20.23	28.30	35.27	33.40	43.92	72.83	19.27	94.94	13.13	28.96	25.66	19.70	15.92	56.31	16.71	42.69
38	ER4b	ExonRegion	0	35.34	53.13	49.03	24.96	29.79	77.42	20.56	46.25	20.81	61.68	77.45	52.39	25.51	34.13	23.04	31.26	32.94	68.65	68.70	23.60	111.46	17.42	39.91	35.20	32.51	16.72	61.89	15.25	44.67
39	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.60	2.04	0.00	2.77	0.00	2.39	0.00	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E4a_E5a	KnownJunction	0	27.55	81.05	49.46	9.92	14.74	70.90	14.82	26.18	23.36	51.57	69.72	66.93	15.92	29.36	25.31	28.23	27.66	47.52	113.29	29.28	76.81	13.95	38.32	31.52	16.97	29.14	60.43	23.27	36.55
41	E4a_E5b	KnownJunction	0	2.36	0.00	4.29	0.00	0.00	9.05	0.00	0.00	0.00	1.64	0.00	0.00	4.84	1.06	8.37	2.75	3.56	0.00	16.18	0.00	14.52	0.00	0.00	0.00	3.37	1.97	6.56	0.00	0.00
42	E4a_E5c	KnownJunction	0	2.89	9.31	8.50	0.00	7.37	15.54	2.92	25.98	4.17	17.38	16.07	6.30	10.03	2.61	7.97	6.58	5.36	9.25	16.18	0.00	32.57	2.24	7.24	5.32	14.28	3.43	4.37	2.25	18.32
43	Ix	Intron	0	0.00	0.00	0.00	0.00	2.86	1.61	0.00	0.00	1.32	1.69	0.00	0.00	0.00	0.00	0.00	1.45	6.13	1.13	1.87	1.62	0.00	0.00	0.00	0.00	0.84	0.00	1.07	2.87	1.17
44	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	2.93	1.65	0.00	0.00	1.35	1.73	0.00	0.00	0.00	0.00	0.00	1.49	6.26	1.16	1.92	1.65	0.00	0.00	0.00	0.00	0.86	0.00	1.10	2.93	1.20
45	E5_Aa	NovelBoundary	0	0.00	4.56	1.47	21.57	0.00	0.00	0.00	2.39	4.96	5.27	1.61	3.01	0.00	0.00	0.00	2.75	1.40	4.62	8.09	0.00	7.38	0.00	0.00	0.00	1.93	0.00	0.00	0.00	2.05
46	ER5a	ExonRegion	1	21.37	71.11	48.55	5.59	24.03	48.72	8.30	36.66	19.20	64.29	66.26	69.23	24.53	30.01	18.28	20.39	27.58	67.03	126.19	23.23	61.33	14.90	38.82	38.53	24.51	22.42	56.67	21.38	34.07
47	E5_Ab	KnownBoundary	0	5.72	27.44	21.43	0.00	14.00	16.38	2.80	12.94	8.40	22.21	21.57	40.93	17.45	11.68	9.17	13.31	7.77	14.64	16.18	3.80	23.63	8.26	19.55	16.57	8.64	3.56	22.21	10.47	8.25
48	E5_Ac	KnownBoundary	0	13.98	21.04	16.19	9.27	0.00	6.48	0.00	11.79	7.89	20.17	11.99	17.32	6.24	11.57	0.00	0.00	16.41	4.62	8.09	6.78	17.93	8.80	8.72	10.53	18.37	6.01	21.42	0.00	12.45
49	ER5b	ExonRegion	1	24.29	73.36	56.85	14.63	23.25	45.82	6.72	52.16	17.23	71.23	55.54	68.44	36.37	32.65	18.67	22.78	35.73	81.88	102.59	29.04	69.89	15.02	37.97	34.42	40.02	23.05	82.42	19.02	36.24
50	ER5c	ExonRegion	0	33.62	61.75	36.54	26.87	17.74	53.71	20.39	64.56	23.86	70.06	68.42	81.54	45.51	32.73	24.41	21.09	38.55	70.38	63.32	25.59	83.58	13.89	54.85	41.87	33.00	33.71	65.55	19.93	47.69
51	E5_Da	NovelBoundary	0	2.30	6.98	0.00	0.00	0.00	0.00	0.00	0.00	1.86	3.60	0.00	2.38	0.00	0.00	0.00	3.44	6.30	0.00	0.00	0.00	0.00	0.00	1.82	0.00	1.93	0.00	0.00	2.16	0.00
52	E5a_E6a	KnownJunction	0	22.89	111.11	29.08	10.78	37.87	118.90	20.77	66.84	31.79	99.18	46.63	104.97	49.87	36.29	51.03	23.87	37.46	106.98	89.02	32.25	125.91	16.82	50.38	48.15	39.29	48.36	27.09	10.87	55.23
53	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	2.69	5.08	1.43	0.00	3.10	3.40	0.00	2.04	0.00	0.00	5.81	0.00	0.00	0.00	5.86	0.00	0.00	0.00	1.70	0.00	0.00	1.84	4.85
54	ER6a	ExonRegion	0	14.64	60.49	22.02	18.21	23.91	40.16	12.14	22.80	21.54	36.15	32.94	46.40	27.71	18.87	25.07	19.29	24.96	49.64	70.49	20.07	72.21	7.71	19.23	28.35	19.96	14.03	44.18	9.13	30.61
55	E6_Da	KnownBoundary	0	11.62	107.42	35.06	0.00	92.11	44.20	5.15	20.30	29.78	43.54	13.35	17.62	38.28	8.44	8.37	26.62	15.33	52.01	32.15	12.40	38.23	0.00	30.24	42.23	10.95	19.18	53.38	17.66	14.96
56	E6a_E6b	KnownJunction	0	2.12	14.15	14.75	0.00	21.81	12.74	4.23	1.79	6.70	5.83	3.51	0.00	15.32	1.64	0.00	2.83	0.00	0.00	0.00	0.00	2.97	0.00	3.64	17.59	1.40	1.50	25.74	3.28	0.00
57	ER6b	ExonRegion	0	12.39	61.39	11.15	15.23	19.03	44.56	13.21	15.04	46.67	39.06	34.76	38.26	35.94	13.56	42.29	23.65	20.20	38.55	61.33	16.66	65.27	5.50	14.14	41.42	15.39	11.75	56.81	7.43	30.45
58	E6_Ab	KnownBoundary	0	11.09	116.05	13.11	0.00	0.00	54.44	4.46	15.13	64.68	36.55	47.58	18.79	30.32	11.90	53.42	10.48	15.04	51.37	72.83	37.96	74.16	2.29	18.22	60.95	18.03	7.77	33.25	1.71	26.34
59	ER6c	ExonRegion	0	6.71	53.88	2.97	10.21	9.03	29.89	7.16	6.54	34.19	18.18	12.43	13.35	17.17	7.80	33.78	11.06	6.27	25.16	40.85	10.10	52.86	5.64	5.88	24.85	4.73	2.65	30.52	1.90	15.72
60	ER6d	ExonRegion	0	0.00	2.46	0.84	5.48	0.00	3.09	0.00	0.00	0.56	0.00	0.00	0.62	0.00	0.00	0.00	0.00	0.00	3.41	7.92	0.00	2.50	0.00	0.00	1.61	0.00	0.00	0.00	0.00	1.34