Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CCDC109A	Gene	0	80.34	75.12	43.64	74.39	54.62	97.78	44.76	64.07	62.95	67.98	82.08	83.56	77.50	65.25	34.30	31.74	66.21	53.93	48.39	41.21	107.75	160.28	68.61	86.51	48.77	34.55	87.33	92.80	96.77
2	373053	Transcript	0	69.75	38.84	50.62	61.66	18.70	65.90	28.81	65.59	26.72	52.11	93.32	81.22	52.42	60.60	24.05	28.18	53.27	49.41	19.29	20.86	67.55	170.25	71.97	44.61	50.53	46.72	101.07	77.50	68.54
3	357157	Transcript	0	0.00	0.00	0.29	0.00	0.00	0.48	0.70	0.00	0.00	0.00	0.00	0.00	0.01	0.00	1.75	0.00	0.27	0.00	0.55	0.00	0.24	0.31	0.31	0.00	0.00	0.00	0.00	0.28	0.00
4	483185	Transcript	0	1.98	1.65	0.35	0.09	1.36	2.41	0.08	0.68	3.20	0.63	0.36	1.34	0.67	0.69	1.19	0.72	1.36	1.79	0.90	0.43	4.12	1.09	0.22	0.71	0.49	0.13	0.17	1.70	0.81
5	ER1a	ExonRegion	0	0.33	0.00	0.60	14.63	9.96	0.53	0.00	0.00	0.00	1.22	0.92	1.52	0.00	0.70	0.00	1.36	0.85	4.41	0.00	0.00	0.77	3.61	0.00	0.00	0.00	0.73	0.42	6.39	0.00
6	ER1b	ExonRegion	0	17.65	3.37	16.10	47.39	68.07	14.48	7.65	8.17	3.61	9.82	4.35	15.08	13.25	8.05	6.45	13.02	10.37	22.58	6.24	7.26	16.14	56.11	26.27	7.09	5.13	14.00	5.88	18.37	12.43
7	E1a_E2a	KnownJunction	0	21.23	8.53	5.08	0.00	12.08	10.05	7.55	13.79	4.08	7.39	5.50	13.37	8.12	12.52	0.00	3.60	5.69	23.12	8.09	3.56	5.46	45.46	9.51	8.61	0.00	1.97	0.00	16.62	1.49
8	I1_SR3	SilentIntronRegion	0	0.72	0.23	0.10	0.00	0.00	0.52	0.00	0.01	0.99	0.69	0.15	0.45	0.09	0.26	0.52	0.35	2.03	0.40	0.87	0.00	2.42	0.23	0.26	0.45	0.18	0.13	0.00	0.87	0.63
9	I1_AR1	ActiveIntronRegion	0	0.90	0.00	0.00	0.00	0.00	0.95	0.00	2.54	0.27	0.00	0.00	0.00	0.56	1.25	0.00	1.71	1.22	1.33	2.20	0.00	2.14	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.93
10	I1_SR2	SilentIntronRegion	0	0.21	0.92	0.00	0.00	0.00	0.39	0.14	0.00	2.27	0.51	0.17	0.48	0.55	0.00	1.08	0.96	1.05	0.41	0.23	0.18	0.72	0.13	0.00	0.61	0.10	0.11	0.26	0.12	0.49
11	I1_AR2	ActiveIntronRegion	0	0.00	0.46	0.00	0.00	0.00	0.59	0.00	0.00	0.75	0.62	0.00	0.00	0.00	0.00	2.28	0.00	0.71	1.37	0.00	0.04	1.97	0.26	0.00	1.22	0.00	0.22	0.00	0.23	0.64
12	I1_AR3	ActiveIntronRegion	0	0.00	0.45	0.00	0.00	0.00	0.00	0.28	0.00	2.04	0.62	0.00	1.38	0.45	0.00	0.77	0.00	1.47	0.27	0.45	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.23	0.66
13	I1_AR4	ActiveIntronRegion	0	0.89	0.00	0.14	0.00	2.59	0.23	0.73	1.46	0.99	1.88	0.00	0.48	0.77	0.46	1.17	0.00	0.81	0.00	0.00	0.00	2.18	0.85	0.00	0.56	0.00	0.83	0.00	2.00	0.98
14	I1_SR5	SilentIntronRegion	0	0.08	4.52	0.80	0.00	0.00	0.67	0.11	0.82	0.90	0.76	0.00	0.33	0.66	0.03	3.08	0.00	2.90	0.34	0.00	0.00	2.62	0.36	0.00	0.76	0.00	0.55	0.00	1.35	2.15
15	I1_AR5	ActiveIntronRegion	0	1.04	2.22	0.32	0.00	0.00	1.04	0.69	0.59	1.22	0.00	0.00	0.37	0.22	0.00	0.88	0.00	1.34	0.33	0.00	0.00	1.58	0.66	0.00	0.00	0.00	0.00	0.00	0.00	0.80
16	I1_AR6	ActiveIntronRegion	0	5.23	3.28	0.00	0.00	0.00	5.42	5.32	0.00	3.85	2.92	3.58	5.69	1.14	0.40	0.00	2.18	2.94	2.54	1.40	0.00	8.13	2.38	2.39	0.00	0.51	0.00	0.00	0.60	0.00
17	I1_AR7	ActiveIntronRegion	0	0.78	0.00	0.60	0.00	0.00	0.37	1.23	0.00	1.37	1.31	0.94	0.96	0.00	0.00	1.99	0.00	0.77	2.79	1.16	4.49	5.33	0.65	0.65	0.78	0.00	0.00	0.00	1.65	0.00
18	I1_AR9	ActiveIntronRegion	0	0.00	0.45	0.23	0.00	0.00	0.39	0.00	0.52	2.51	0.81	0.67	0.26	0.82	0.13	0.00	0.00	0.21	0.27	0.00	0.00	1.40	0.25	0.00	0.90	0.00	0.22	0.00	0.23	0.19
19	I1_SR12	SilentIntronRegion	0	0.15	0.00	0.23	0.00	0.33	0.00	0.27	0.00	0.61	0.46	0.16	0.28	0.00	0.15	0.94	0.17	0.71	0.13	0.00	0.00	2.80	0.00	0.00	0.59	0.00	0.00	0.12	1.40	0.14
20	I1_AR20	ActiveIntronRegion	0	0.73	2.73	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.76
21	ER2a	ExonRegion	0	86.11	27.73	12.63	23.92	17.93	52.49	18.92	31.40	10.79	26.71	21.74	36.47	37.24	32.49	12.96	27.73	30.94	41.60	23.34	24.69	48.54	178.52	41.54	21.85	14.95	27.86	13.95	49.67	27.34
22	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E2a_E3a	KnownJunction	0	78.69	53.90	18.49	29.12	19.75	91.16	39.71	34.34	17.97	68.47	55.77	60.27	81.23	48.01	17.74	81.17	60.80	88.23	40.46	25.80	102.80	160.34	106.08	43.90	18.60	63.81	42.74	123.88	79.50
24	E2a_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	1.42	0.00	0.00	0.00	0.00	2.88	0.00	0.00	0.00	1.80	0.00	0.00	2.75	0.00	0.00	0.00	0.00	0.00
26	ER3a	ExonRegion	0	121.73	69.46	40.74	41.48	33.71	85.26	43.00	83.10	28.86	93.30	87.66	96.93	99.04	101.00	29.44	40.80	76.73	78.99	47.59	67.82	85.15	219.64	100.28	65.18	61.37	63.78	56.48	134.61	120.93
27	E3_Da	NovelBoundary	0	5.01	0.00	0.00	0.00	0.00	1.50	0.00	0.00	1.46	4.03	5.82	0.00	0.00	2.15	0.00	0.00	9.99	13.87	0.00	0.00	7.06	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00
28	E3a_E4b	KnownJunction	1	111.36	90.16	68.14	51.55	114.21	100.29	33.87	105.35	26.43	95.71	80.98	96.41	96.49	101.01	58.00	47.05	76.98	94.52	64.74	90.47	112.79	261.22	83.68	72.32	64.75	35.66	71.76	141.85	101.02
29	I3	Intron	0	1.15	1.63	0.18	0.00	0.52	2.36	0.00	0.00	0.72	0.62	0.13	0.33	0.76	0.24	0.49	0.00	1.44	0.83	0.68	0.00	2.90	0.58	0.00	0.46	0.00	1.01	1.57	1.22	0.64
30	I3_SR1	SilentIntronRegion	0	1.17	1.66	0.18	0.00	0.53	2.40	0.00	0.00	0.74	0.63	0.13	0.34	0.78	0.25	0.50	0.00	1.47	0.81	0.70	0.00	2.96	0.59	0.00	0.47	0.00	1.03	1.60	1.25	0.66
31	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	1.40	0.00	0.00	0.00	5.50	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00
32	ER4a	ExonRegion	0	1.98	1.65	0.35	0.09	1.36	2.41	0.08	0.68	3.20	0.63	0.36	1.34	0.67	0.69	1.19	0.72	1.36	1.79	0.90	0.43	4.12	1.09	0.22	0.71	0.49	0.13	0.17	1.70	0.81
33	E4_Ab	KnownBoundary	0	3.01	3.97	0.00	0.00	0.00	0.00	0.00	0.00	1.83	1.64	0.00	1.51	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	13.28	0.00	0.00	0.00	0.00	0.00	0.00	2.07	0.00
34	ER4b	ExonRegion	0	148.39	99.68	59.12	102.31	128.51	120.07	49.93	148.14	53.25	117.10	129.02	129.08	141.07	140.18	22.19	45.36	116.06	95.47	75.59	81.08	123.60	325.03	116.86	94.80	97.59	81.44	81.96	155.76	178.86
35	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E4a_E6a	KnownJunction	0	116.14	60.59	60.57	72.90	17.98	121.09	52.35	86.14	31.49	83.37	108.66	125.42	89.42	105.18	15.35	35.04	103.93	55.48	97.11	56.07	105.77	244.35	74.17	59.70	76.79	54.33	81.75	98.80	121.46
37	E4a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.27	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E5_Aa	NovelBoundary	1	21.41	4.56	25.74	9.06	0.00	26.70	7.78	30.11	47.75	38.31	9.14	21.36	18.41	23.44	17.54	20.96	64.87	0.00	0.00	22.25	41.27	15.17	13.99	41.99	20.00	25.06	21.42	43.13	38.03
39	ER5a	ExonRegion	0	0.00	0.00	0.87	0.00	0.00	1.43	2.10	0.00	0.00	0.00	0.00	0.00	0.03	0.00	5.26	0.00	0.80	0.00	1.66	0.00	0.73	0.94	0.94	0.00	0.00	0.00	0.00	0.85	0.00
40	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.22	1.50	0.00	0.00	3.14	0.00	4.81	0.00	1.43	1.09	0.00	0.00	1.04	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52
41	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E6_Aa	NovelBoundary	0	0.00	8.34	0.00	0.00	0.00	0.00	0.00	0.00	3.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	2.27	0.00	0.00	0.00	0.00	0.00	0.00
43	ER6a	ExonRegion	1	113.73	75.11	69.02	104.21	48.57	110.61	49.10	117.40	33.85	109.89	122.54	139.23	108.09	122.78	31.66	55.09	102.64	88.44	72.20	58.00	121.72	271.31	115.61	77.69	81.72	50.26	73.17	189.98	139.88
44	E6_Da	KnownBoundary	1	102.40	70.77	53.62	91.24	43.03	50.88	22.71	90.23	45.28	54.85	132.74	102.35	120.18	97.84	17.34	43.60	77.30	46.23	113.07	36.72	78.50	193.11	112.54	40.73	63.53	67.16	115.30	130.71	132.85
45	ER6b	ExonRegion	1	100.74	62.70	65.79	95.06	24.03	74.06	32.08	98.13	36.62	63.75	120.58	111.30	95.58	98.50	20.73	36.27	81.40	73.69	41.69	28.35	97.44	238.82	110.72	53.25	75.60	67.30	125.93	121.54	113.94
46	E6_Db	NovelBoundary	0	0.00	11.83	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E6b_E7a	KnownJunction	0	108.18	53.81	85.46	75.28	22.11	123.12	54.35	98.64	43.55	91.36	158.46	130.84	61.68	82.60	51.42	46.89	77.54	70.12	16.18	34.24	104.45	268.32	105.20	80.57	76.00	72.14	176.87	104.56	91.68
48	E6b_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	1.72	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER7a	ExonRegion	0	90.05	55.07	79.25	91.73	42.20	94.73	42.37	70.43	27.18	65.03	119.05	111.77	79.45	71.99	37.06	46.67	81.89	71.33	45.35	31.81	116.51	188.24	81.66	67.22	55.51	42.56	89.67	118.39	91.31
51	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	8.17	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05
52	E7a_E8a	KnownJunction	0	155.49	105.97	72.98	98.79	54.23	123.01	57.44	48.22	32.46	94.95	167.60	152.89	88.53	85.39	63.98	63.19	106.20	94.78	48.55	61.11	156.91	165.83	101.26	92.95	69.25	40.60	113.01	145.53	105.54
53	E8_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	3.91	0.00	2.19	0.00	0.00	0.00	4.22	0.00	1.95	0.00	3.82	1.10	9.50	0.00	0.00	1.85	0.00	0.00	3.05	0.00	0.00	0.00	1.66	0.00
54	ER8a	ExonRegion	0	114.45	73.00	65.07	96.63	57.35	162.46	65.11	62.75	46.38	90.88	156.34	127.23	86.48	79.95	30.68	54.72	99.15	78.33	56.86	46.75	206.28	187.18	123.73	102.24	63.28	42.73	163.76	115.12	93.69
55	E8_Da	NovelBoundary	0	5.72	4.75	0.00	0.00	0.00	3.68	0.00	0.00	0.00	3.71	0.00	4.28	0.00	4.43	0.00	6.58	8.98	0.00	0.00	3.23	3.73	0.00	0.00	2.57	0.00	0.00	0.00	0.00	5.58
56	E8a_E9a	KnownJunction	1	130.36	68.06	79.35	196.71	101.69	152.13	45.31	82.56	48.97	86.68	152.48	121.99	106.77	75.55	46.84	43.60	107.39	52.14	48.55	48.30	195.30	220.87	87.57	121.13	57.51	41.84	119.42	154.65	111.32
57	I8_AR1	ActiveIntronRegion	0	1.30	1.44	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.97	0.00	0.00	0.00	0.00	1.74	2.02	2.05	0.00	0.00	0.15	0.00	0.00	0.72	1.04	0.00	14.65	0.00	0.00
58	I8_SR1	SilentIntronRegion	0	2.18	2.40	0.00	3.39	0.00	0.94	0.00	0.00	2.92	0.68	0.13	0.73	0.00	1.35	0.00	3.98	3.91	1.97	1.51	0.00	2.83	0.00	0.77	1.71	0.89	0.00	0.41	0.00	0.00
59	I8_SR2	SilentIntronRegion	0	1.91	0.81	0.36	0.00	0.00	0.80	2.16	0.31	1.38	0.15	0.51	1.46	0.28	1.74	0.00	0.53	2.42	1.69	0.00	0.00	2.64	0.96	0.40	1.84	1.23	0.00	1.18	1.05	0.25
60	E9_Aa	NovelBoundary	0	2.89	0.00	1.54	0.00	0.00	1.96	2.63	0.00	0.00	0.00	1.52	0.00	0.00	1.37	0.00	3.82	3.69	4.62	0.00	0.00	15.80	2.04	2.51	8.79	3.86	0.00	0.00	2.29	3.37
61	ER9a	ExonRegion	0	94.33	104.86	51.36	94.93	69.85	128.98	60.01	76.78	96.92	84.83	98.58	100.69	97.28	76.21	47.83	36.18	80.41	61.31	63.17	51.53	140.05	185.40	78.15	123.00	59.10	37.81	118.50	108.55	124.17
62	IG24_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00